Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G03311 Aquilegia oxysepala HOM05D003325 ORTHO05D003852 1.7e-165 585.9 289 100.0
Nn4g22275 Nelumbo nucifera HOM05D003325 ORTHO05D003852 6.8e-61 238.4 208 57.2
TAR622G0641 Trochodendron aralioides HOM05D003325 ORTHO05D003852 5.9e-57 225.3 206 55.8
TAR622G0196 Trochodendron aralioides HOM05D003325 ORTHO05D003852 8.3e-51 204.9 200 54.5
GSVIVG01008557001 Vitis vinifera HOM05D003325 ORTHO05D003852 2.6e-44 183.3 208 47.6
Hma1.2p1_0014F.1_g009260 Hydrangea macrophylla HOM05D003325 ORTHO05D003852 7.5e-44 181.8 201 48.3
HanXRQChr13g0407901 Helianthus annuus HOM05D003325 ORTHO05D003852 1.7e-43 180.6 202 46.5
Lsat_1_v5_gn_1_33020 Lactuca sativa HOM05D003325 ORTHO05D003852 1.1e-42 177.9 196 48.0
vmacro19124 Vaccinium macrocarpon HOM05D003325 ORTHO05D003852 1.8e-42 177.2 209 45.9
Ciclev10031319m.g Citrus clementina HOM05D003325 ORTHO05D003852 4.1e-42 176.0 207 45.9
Gohir.D03G113900 Gossypium hirsutum HOM05D003325 ORTHO05D003852 4.1e-42 176.0 211 47.9
Gorai.003G120100 Gossypium raimondii HOM05D003325 ORTHO05D003852 4.1e-42 176.0 211 47.9
QL10p002570 Quercus lobata HOM05D003325 ORTHO05D003852 5.4e-42 175.6 197 47.2
ECA247G1358 Erigeron canadensis HOM05D003325 ORTHO05D003852 9.2e-42 174.9 235 43.0
Eucgr.B00095 Eucalyptus grandis HOM05D003325 ORTHO05D003852 9.2e-42 174.9 210 47.1
MBI11_g22691_MAGBIO Magnolia biondii HOM05D003325 ORTHO05D003852 1.2e-41 174.5 195 48.2
CiPaw.11G005500 Carya illinoinensis HOM05D003325 ORTHO05D003852 1.6e-41 174.1 208 46.6
CSS0012678 Camellia sinensis var. sinensis HOM05D003325 ORTHO05D003852 2.7e-41 173.3 209 45.9
Gohir.A03G053200 Gossypium hirsutum HOM05D003325 ORTHO05D003852 4.5e-41 172.6 211 46.9
Manes.06G120800 Manihot esculenta HOM05D003325 ORTHO05D003852 1.0e-40 171.4 243 42.8
TWI14G0714 Tripterygium wilfordii HOM05D003325 ORTHO05D003852 1.3e-40 171.0 207 45.9
Rhsim08G0191500 Rhododendron simsii HOM05D003325 ORTHO05D003852 1.7e-40 170.6 244 40.6
Cfa018776 Carpinus fangiana HOM05D003325 ORTHO05D003852 2.3e-40 170.2 208 44.7
MD14G1155200 Malus domestica HOM05D003325 ORTHO05D003852 2.3e-40 170.2 202 46.5
Potri.015G098700 Populus trichocarpa HOM05D003325 ORTHO05D003852 2.3e-40 170.2 245 40.4
Haze_07162 Corylus avellana HOM05D003325 ORTHO05D003852 5.0e-40 169.1 208 45.2
Migut.I00547 Erythranthe guttata HOM05D003325 ORTHO05D003852 5.0e-40 169.1 206 46.1
Actinidia25563 Actinidia chinensis HOM05D003325 ORTHO05D003852 6.6e-40 168.7 206 45.1
Eucgr.L01506 Eucalyptus grandis HOM05D003325 ORTHO05D003852 8.6e-40 168.3 210 46.2
Hund10145 Selenicereus undatus HOM05D003325 ORTHO05D003852 1.1e-39 167.9 193 44.0
Atru.chr6.1822 Acer truncatum HOM05D003325 ORTHO05D003852 1.5e-39 167.5 207 46.9
Cpa.g.sc13.92 Carica papaya HOM05D003325 ORTHO05D003852 1.5e-39 167.5 208 44.7
Ca_16056_v3 Cicer arietinum L. HOM05D003325 ORTHO05D003852 2.5e-39 166.8 207 48.3
Medtr3g099090 Medicago truncatula HOM05D003325 ORTHO05D003852 2.5e-39 166.8 207 47.3
Nitab4.5_0007721g0020 Nicotiana tabacum HOM05D003325 ORTHO05D003852 2.5e-39 166.8 243 40.3
Psat5g052120 Pisum sativum HOM05D003325 ORTHO05D003852 2.5e-39 166.8 207 47.3
Thecc.03G131500 Theobroma cacao HOM05D003325 ORTHO05D003852 3.3e-39 166.4 208 44.7
Glyma.06G168700 Glycine max HOM05D003325 ORTHO05D003852 5.6e-39 165.6 203 45.3
Glyma.04G196900 Glycine max HOM05D003325 ORTHO05D003852 7.3e-39 165.2 203 44.8
CANSAT80G0326 Cannabis sativa HOM05D003325 ORTHO05D003852 9.5e-39 164.9 192 47.4
CANSAT80G2651 Cannabis sativa HOM05D003325 ORTHO05D003852 9.5e-39 164.9 192 47.4
Cc01_g02380 Coffea canephora HOM05D003325 ORTHO05D003852 9.5e-39 164.9 206 43.2
Nitab4.5_0000636g0090 Nicotiana tabacum HOM05D003325 ORTHO05D003852 1.2e-38 164.5 244 39.8
Duzib205G1086 Durio zibethinus HOM05D003325 ORTHO05D003852 1.6e-38 164.1 216 44.4
Sabra12G0073800 Salix brachista HOM05D003325 ORTHO05D003852 1.6e-38 164.1 207 44.4
Lj1g0000526 Lotus japonicus HOM05D003325 ORTHO05D003852 2.1e-38 163.7 203 44.8
Nitab4.5_0012330g0020 Nicotiana tabacum HOM05D003325 ORTHO05D003852 3.6e-38 162.9 244 39.8
PGR083G0510 Punica granatum HOM05D003325 ORTHO05D003852 8.0e-38 161.8 213 41.8
Solyc04g016130.3 Solanum lycopersicum HOM05D003325 ORTHO05D003852 1.0e-37 161.4 244 39.8
DCAR_016380 Daucus carota HOM05D003325 ORTHO05D003852 1.4e-37 161.0 203 42.4
FvH4_5g08560 Fragaria vesca HOM05D003325 ORTHO05D003852 1.4e-37 161.0 230 42.2
Potri.004G005700 Populus trichocarpa HOM05D003325 ORTHO05D003852 1.4e-37 161.0 222 41.4
Prupe.5G149200 Prunus persica HOM05D003325 ORTHO05D003852 1.8e-37 160.6 199 43.7
MSTRG.11269 Avicennia marina HOM05D003325 ORTHO05D003852 2.3e-37 160.2 202 41.6
CAN.G676.19 Capsicum annuum HOM05D003325 ORTHO05D003852 2.3e-37 160.2 208 42.3
Potri.012G100500 Populus trichocarpa HOM05D003325 ORTHO05D003852 3.1e-37 159.8 207 44.0
Duzib068G1443 Durio zibethinus HOM05D003325 ORTHO05D003852 4.0e-37 159.5 222 42.3
FAN18G4277 Fragaria x ananassa HOM05D003325 ORTHO05D003852 6.8e-37 158.7 235 41.7
Sopen04g008200 Solanum pennellii HOM05D003325 ORTHO05D003852 6.8e-37 158.7 244 38.9
FAN04G0895 Fragaria x ananassa HOM05D003325 ORTHO05D003852 1.2e-36 157.9 230 41.7
FAN13G2783 Fragaria x ananassa HOM05D003325 ORTHO05D003852 1.2e-36 157.9 230 41.7
Phvul.009G165200 Phaseolus vulgaris HOM05D003325 ORTHO05D003852 1.2e-36 157.9 203 44.3
Lalb_Chr08g0237261 Lupinus albus HOM05D003325 ORTHO05D003852 1.5e-36 157.5 200 45.0
COL.COLO4_07120 Corchorus olitorius HOM05D003325 ORTHO05D003852 2.0e-36 157.1 208 44.2
Eucgr.F00440 Eucalyptus grandis HOM05D003325 ORTHO05D003852 2.0e-36 157.1 207 44.4
Oeu061143.2 Olea europaea HOM05D003325 ORTHO05D003852 2.0e-36 157.1 239 39.7
RcHm_v2.0_Chr7g0189831 Rosa chinensis HOM05D003325 ORTHO05D003852 4.4e-36 156.0 235 40.4
SGA_v2.0_scaffold383G50423 Striga asiatica HOM05D003325 ORTHO05D003852 5.8e-36 155.6 223 39.5
Peaxi162Scf00130g00520 Petunia axillaris HOM05D003325 ORTHO05D003852 7.5e-36 155.2 207 43.0
Lj5A94T50 Lonicera japonica HOM05D003325 ORTHO05D003852 2.2e-35 153.7 187 44.9
Oeu061142.1 Olea europaea HOM05D003325 ORTHO05D003852 3.7e-35 152.9 201 40.3
Potri.011G010100 Populus trichocarpa HOM05D003325 ORTHO05D003852 3.7e-35 152.9 203 41.9
HanXRQChr13g0407851 Helianthus annuus HOM05D003325 ORTHO05D003852 1.1e-34 151.4 198 43.4
HanXRQChr10g0317761 Helianthus annuus HOM05D003325 ORTHO05D003852 3.2e-34 149.8 201 42.8
THA.LOC104798940 Tarenaya hassleriana HOM05D003325 ORTHO05D003852 5.4e-34 149.1 212 42.0
VMungo1309G3084 Vigna mungo HOM05D003325 ORTHO05D003852 7.0e-34 148.7 187 42.8
AUR62029583 Chenopodium quinoa HOM05D003325 ORTHO05D003852 1.6e-33 147.5 223 39.0
HanXRQChr13g0407891 Helianthus annuus HOM05D003325 ORTHO05D003852 1.6e-33 147.5 201 42.3
Aa31LG1G18420 Aethionema arabicum HOM05D003325 ORTHO05D003852 1.0e-32 144.8 194 43.8
Potri.011G010200 Populus trichocarpa HOM05D003325 ORTHO05D003852 1.3e-32 144.4 202 41.1
QL10p002524 Quercus lobata HOM05D003325 ORTHO05D003852 1.3e-32 144.4 210 41.0
Manes.06G120900 Manihot esculenta HOM05D003325 ORTHO05D003852 3.0e-32 143.3 197 41.1
HanXRQChr13g0408791 Helianthus annuus HOM05D003325 ORTHO05D003852 6.6e-32 142.1 195 41.0
QL10p002543 Quercus lobata HOM05D003325 ORTHO05D003852 8.6e-32 141.7 208 42.3
Thecc.03G131600 Theobroma cacao HOM05D003325 ORTHO05D003852 8.6e-32 141.7 209 40.2
PGSC0003DMG400038085 Solanum tuberosum HOM05D003325 ORTHO05D003852 1.1e-31 141.4 246 35.8
ATR0561G074 Amborella trichopoda HOM05D003325 ORTHO05D003852 1.5e-31 141.0 213 39.4
AUR62038854 Chenopodium quinoa HOM05D003325 ORTHO05D003852 4.3e-31 139.4 223 37.2
Duzib084G0716 Durio zibethinus HOM05D003325 ORTHO05D003852 7.3e-31 138.7 225 38.7
AT5G63520 Arabidopsis thaliana HOM05D003325 ORTHO05D003852 2.1e-30 137.1 190 44.2
Lj1g0016208 Lotus japonicus HOM05D003325 ORTHO05D003852 2.8e-30 136.7 206 40.8
arahy.Tifrunner.gnm1.ann1.C4UAPE Arachis hypogaea HOM05D003325 ORTHO05D003852 4.7e-30 136.0 201 41.8
Solyc10g080020.3 Solanum lycopersicum HOM05D003325 ORTHO05D003852 8.0e-30 135.2 196 40.8
Sopen10g030630 Solanum pennellii HOM05D003325 ORTHO05D003852 8.0e-30 135.2 196 40.8
PGSC0003DMG400023730 Solanum tuberosum HOM05D003325 ORTHO05D003852 8.0e-30 135.2 202 39.1
HanXRQChr13g0408781 Helianthus annuus HOM05D003325 ORTHO05D003852 1.1e-29 134.8 202 42.6
Gohir.A03G053300 Gossypium hirsutum HOM05D003325 ORTHO05D003852 1.4e-29 134.4 197 41.6
HanXRQChr02g0034341 Helianthus annuus HOM05D003325 ORTHO05D003852 1.8e-29 134.0 185 43.2
Sc10g0010520 Simmondsia chinensis HOM05D003325 ORTHO05D003852 2.3e-29 133.7 192 39.1
Gohir.D03G113600 Gossypium hirsutum HOM05D003325 ORTHO05D003852 3.1e-29 133.3 197 41.1
Gorai.003G119900 Gossypium raimondii HOM05D003325 ORTHO05D003852 3.1e-29 133.3 197 41.1
Carub.0008s2425 Capsella rubella HOM05D003325 ORTHO05D003852 4.0e-29 132.9 191 44.5
Cpa.g.sc4.169 Carica papaya HOM05D003325 ORTHO05D003852 4.0e-29 132.9 212 37.3
AL8G40600 Arabidopsis lyrata HOM05D003325 ORTHO05D003852 6.8e-29 132.1 234 38.5
HanXRQChr02g0034321 Helianthus annuus HOM05D003325 ORTHO05D003852 1.5e-28 131.0 233 38.2
BcaC03g18211 Brassica carinata HOM05D003325 ORTHO05D003852 2.6e-28 130.2 194 40.7
A02p42850 Brassica napus HOM05D003325 ORTHO05D003852 2.6e-28 130.2 194 41.2
BolC2t12350H Brassica oleracea HOM05D003325 ORTHO05D003852 2.6e-28 130.2 194 40.7
Solyc04g016160.4 Solanum lycopersicum HOM05D003325 ORTHO05D003852 2.6e-28 130.2 244 32.4
PGSC0003DMG400027287 Solanum tuberosum HOM05D003325 ORTHO05D003852 2.6e-28 130.2 247 33.2
Sopen04g008210 Solanum pennellii HOM05D003325 ORTHO05D003852 4.4e-28 129.4 244 32.0
Sp2g26610 Schrenkiella parvula HOM05D003325 ORTHO05D003852 1.7e-27 127.5 191 39.3
Dinv23165 Davidia involucrata HOM05D003325 ORTHO05D003852 2.2e-27 127.1 119 56.3
HanXRQChr00c0029g0571191 Helianthus annuus HOM05D003325 ORTHO05D003852 2.2e-27 127.1 202 41.1
C02p62780 Brassica napus HOM05D003325 ORTHO05D003852 3.7e-27 126.3 195 40.5
BcaB07g29692 Brassica carinata HOM05D003325 ORTHO05D003852 1.4e-26 124.4 191 40.8
BraA02t09207Z Brassica rapa HOM05D003325 ORTHO05D003852 1.4e-26 124.4 195 40.5
HanXRQChr13g0408811 Helianthus annuus HOM05D003325 ORTHO05D003852 1.4e-26 124.4 187 40.1
COL.COLO4_07119 Corchorus olitorius HOM05D003325 ORTHO05D003852 1.9e-26 124.0 233 32.6
HanXRQChr04g0099641 Helianthus annuus HOM05D003325 ORTHO05D003852 1.9e-26 124.0 192 41.1
CDE06G2031 Ceratophyllum demersum HOM05D003325 ORTHO05D003852 2.4e-26 123.6 198 38.9
CARHR277380 Cardamine hirsuta HOM05D003325 ORTHO05D003852 3.2e-26 123.2 193 42.5
Migut.N02143 Erythranthe guttata HOM05D003325 ORTHO05D003852 7.1e-26 122.1 232 33.6
HanXRQChr13g0408771 Helianthus annuus HOM05D003325 ORTHO05D003852 7.1e-26 122.1 196 39.8
Potri.015G098800 Populus trichocarpa HOM05D003325 ORTHO05D003852 1.0e-24 118.2 206 37.4
Ciclev10033680m.g Citrus clementina HOM05D003325 ORTHO05D003852 1.3e-24 117.9 193 39.9
DCAR_021629 Daucus carota HOM05D003325 ORTHO05D003852 3.0e-24 116.7 199 38.7
Thhalv10004048m.g Eutrema salsugineum HOM05D003325 ORTHO05D003852 3.9e-24 116.3 192 40.1
HanXRQChr04g0099631 Helianthus annuus HOM05D003325 ORTHO05D003852 3.9e-24 116.3 191 40.3
DCAR_021631 Daucus carota HOM05D003325 ORTHO05D003852 8.6e-24 115.2 199 38.2
FvH4_5g08570 Fragaria vesca HOM05D003325 ORTHO05D003852 1.2e-22 111.3 192 38.5
TWI39G0380 Tripterygium wilfordii HOM05D003325 ORTHO05D003852 2.1e-22 110.5 195 35.9
DCAR_021633 Daucus carota HOM05D003325 ORTHO05D003852 2.8e-22 110.2 199 37.2
MD06G1139200 Malus domestica HOM05D003325 ORTHO05D003852 4.7e-22 109.4 138 41.3
FAN04G2439 Fragaria x ananassa HOM05D003325 ORTHO05D003852 6.2e-22 109.0 191 38.2
MD06G1139600 Malus domestica HOM05D003325 ORTHO05D003852 1.4e-21 107.8 120 48.3
SalBow5G0035 Salvia bowleyana HOM05D003325 ORTHO05D003852 1.8e-21 107.5 200 36.5
Potri.012G100600 Populus trichocarpa HOM05D003325 ORTHO05D003852 2.3e-21 107.1 209 38.3
arahy.Tifrunner.gnm1.ann1.XMC2I2 Arachis hypogaea HOM05D003325 ORTHO05D003852 3.1e-21 106.7 202 35.6
ATR0561G042 Amborella trichopoda HOM05D003325 ORTHO05D003852 4.0e-21 106.3 132 44.7
THA.LOC104798939 Tarenaya hassleriana HOM05D003325 ORTHO05D003852 4.0e-21 106.3 197 34.0
Prupe.5G149100 Prunus persica HOM05D003325 ORTHO05D003852 6.8e-21 105.5 197 33.5
Sed0021268 Sechium edule HOM05D003325 ORTHO05D003852 2.0e-20 104.0 201 35.3
HanXRQChr13g0407821 Helianthus annuus HOM05D003325 ORTHO05D003852 7.6e-20 102.1 129 46.5
Eucgr.B00098 Eucalyptus grandis HOM05D003325 ORTHO05D003852 1.7e-19 100.9 120 44.2
HanXRQChr01g0000031 Helianthus annuus HOM05D003325 ORTHO05D003852 2.4e-18 97.1 137 43.1
FAN18G2108 Fragaria x ananassa HOM05D003325 ORTHO05D003852 4.1e-18 96.3 222 33.3
Ah.11g045510 Amaranthus hybridus HOM05D003325 ORTHO05D003852 7.1e-18 95.5 108 44.4
Sc10g0010530 Simmondsia chinensis HOM05D003325 ORTHO05D003852 9.2e-18 95.1 121 43.0
Migut.N02169 Erythranthe guttata HOM05D003325 ORTHO05D003852 3.0e-16 90.1 156 36.5
BcaB02g09754 Brassica carinata HOM05D003325 ORTHO05D003852 8.6e-16 88.6 208 30.3
BolC3t18546H Brassica oleracea HOM05D003325 ORTHO05D003852 1.5e-15 87.8 208 30.3
Thhalv10004000m.g Eutrema salsugineum HOM05D003325 ORTHO05D003852 1.5e-15 87.8 226 30.5
A06p30150 Brassica napus HOM05D003325 ORTHO05D003852 3.3e-15 86.7 210 30.0
BraA06t25966Z Brassica rapa HOM05D003325 ORTHO05D003852 3.3e-15 86.7 210 30.0
BcaC01g06930 Brassica carinata HOM05D003325 ORTHO05D003852 4.3e-15 86.3 208 30.3
TPR.G27817 Trifolium pratense HOM05D003325 ORTHO05D003852 5.6e-15 85.9 137 35.8
C03p62920 Brassica napus HOM05D003325 ORTHO05D003852 7.3e-15 85.5 208 30.3
Sabra12G0073900 Salix brachista HOM05D003325 ORTHO05D003852 1.2e-14 84.7 204 31.9
TPR.G496 Trifolium pratense HOM05D003325 ORTHO05D003852 1.4e-13 81.3 74 59.5
HanXRQChr13g0408751 Helianthus annuus HOM05D003325 ORTHO05D003852 2.9e-11 73.6 142 36.6
HanXRQChr02g0034301 Helianthus annuus HOM05D003325 ORTHO05D003852 6.4e-11 72.4 78 48.7
SEGI_40826 Sequoiadendron giganteum HOM05D003325 ORTHO05D003852 8.4e-11 72.0 65 50.8
HanXRQChr02g0034311 Helianthus annuus HOM05D003325 ORTHO05D003852 4.6e-09 66.2 91 39.6
MD06G1139800 Malus domestica HOM05D003325 ORTHO05D003852 6.0e-09 65.9 76 40.8
MD07G1107900 Malus domestica HOM05D003543 ORTHO05D004112 7.8e-09 65.5 143 37.1
HanXRQChr13g0403611 Helianthus annuus HOM05D003325 ORTHO05D003852 5.1e-08 62.8 78 41.0
ATR0561G214 Amborella trichopoda HOM05D003325 ORTHO05D003852 1.1e-07 61.6 106 30.2
A02p42810 Brassica napus HOM05D003325 ORTHO05D003852 3.3e-07 60.1 96 34.4
Sabra15G0119700 Salix brachista HOM05D003325 ORTHO05D003852 5.6e-07 59.3 75 42.7
SEGI_07717 Sequoiadendron giganteum HOM05D003325 ORTHO05D003852 7.3e-07 58.9 97 32.0
Solyc04g016150.2 Solanum lycopersicum HOM05D003325 ORTHO05D003852 4.8e-06 56.2 100 29.0


User provided reference genes

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