Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G03211 Aquilegia oxysepala HOM05D003968 ORTHO05D004077 8.0e-79 297.4 189 100.0
Duzib251G0690 Durio zibethinus HOM05D003968 ORTHO05D004077 4.4e-37 158.7 199 65.3
PGR057G0001 Punica granatum HOM05D003968 ORTHO05D004077 7.6e-37 157.9 204 60.8
PGR119G2322 Punica granatum HOM05D003968 ORTHO05D004077 7.6e-37 157.9 204 60.8
Cfa009411 Carpinus fangiana HOM05D003968 ORTHO05D004077 2.9e-36 156.0 193 51.3
RcHm_v2.0_Chr4g0429341 Rosa chinensis HOM05D003968 ORTHO05D004077 3.8e-36 155.6 214 59.8
Haze_12469 Corylus avellana HOM05D003968 ORTHO05D004077 8.4e-36 154.5 193 48.7
TAR629G0662 Trochodendron aralioides HOM05D003968 ORTHO05D004077 1.1e-35 154.1 190 50.5
FAN12G2512 Fragaria x ananassa HOM05D003968 ORTHO05D004077 3.2e-35 152.5 218 60.1
QL03p050330 Quercus lobata HOM05D003968 ORTHO05D004077 5.4e-35 151.8 197 44.7
Eucgr.H03380 Eucalyptus grandis HOM05D003968 ORTHO05D004077 7.1e-35 151.4 207 51.7
Hma1.2p1_0459F.1_g157230 Hydrangea macrophylla HOM05D003968 ORTHO05D004077 1.2e-34 150.6 200 61.0
TWI36G1280 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 1.2e-34 150.6 204 42.6
MBI07_g37482_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 2.1e-34 149.8 188 55.3
VMungo1383G2332 Vigna mungo HOM05D003968 ORTHO05D004077 2.1e-34 149.8 212 42.5
Nn3g16325 Nelumbo nucifera HOM05D003968 ORTHO05D004077 2.7e-34 149.4 193 53.4
CiPaw.06G107600 Carya illinoinensis HOM05D003968 ORTHO05D004077 3.5e-34 149.1 191 51.8
Duzib052G1223 Durio zibethinus HOM05D003968 ORTHO05D004077 3.5e-34 149.1 201 59.2
Nn4g22193 Nelumbo nucifera HOM05D003968 ORTHO05D004077 3.5e-34 149.1 186 53.2
Phvul.008G000400 Phaseolus vulgaris HOM05D003968 ORTHO05D004077 4.6e-34 148.7 214 41.6
CiPaw.05G103900 Carya illinoinensis HOM05D003968 ORTHO05D004077 6.0e-34 148.3 196 49.0
Manes.08G103100 Manihot esculenta HOM05D003968 ORTHO05D004077 6.0e-34 148.3 205 51.7
Manes.09G185900 Manihot esculenta HOM05D003968 ORTHO05D004077 6.0e-34 148.3 220 48.2
CANSAT56G0023 Cannabis sativa HOM05D003968 ORTHO05D004077 7.8e-34 147.9 229 56.8
ClCG07G011730 Citrullus lanatus HOM05D003968 ORTHO05D004077 1.0e-33 147.5 195 63.6
Glyma.18G302000 Glycine max HOM05D003968 ORTHO05D004077 1.0e-33 147.5 203 55.7
Sabra03G0121000 Salix brachista HOM05D003968 ORTHO05D004077 1.0e-33 147.5 197 47.7
Actinidia30604 Actinidia chinensis HOM05D003968 ORTHO05D004077 1.3e-33 147.1 191 51.3
Potri.003G165800 Populus trichocarpa HOM05D003968 ORTHO05D004077 1.3e-33 147.1 196 50.5
GSVIVG01000957001 Vitis vinifera HOM05D003968 ORTHO05D004077 1.3e-33 147.1 197 56.9
Gohir.D12G145000 Gossypium hirsutum HOM05D003968 ORTHO05D004077 3.0e-33 146.0 194 66.5
Ciclev10032280m.g Citrus clementina HOM05D003968 ORTHO05D004077 5.1e-33 145.2 199 59.8
Duzib248G0844 Durio zibethinus HOM05D003968 ORTHO05D004077 5.1e-33 145.2 196 54.6
FvH4_4g23070 Fragaria vesca HOM05D003968 ORTHO05D004077 5.1e-33 145.2 221 55.7
Dinv17895 Davidia involucrata HOM05D003968 ORTHO05D004077 6.6e-33 144.8 195 59.5
Potri.001G062000 Populus trichocarpa HOM05D003968 ORTHO05D004077 6.6e-33 144.8 201 49.8
CDE06G0253 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 8.7e-33 144.4 189 44.4
Thecc.02G196200 Theobroma cacao HOM05D003968 ORTHO05D004077 8.7e-33 144.4 195 63.1
Atru.chr11.2403 Acer truncatum HOM05D003968 ORTHO05D004077 1.1e-32 144.1 205 59.0
arahy.Tifrunner.gnm1.ann1.25I2B1 Arachis hypogaea HOM05D003968 ORTHO05D004077 1.1e-32 144.1 210 53.3
arahy.Tifrunner.gnm1.ann1.GKU1A2 Arachis hypogaea HOM05D003968 ORTHO05D004077 1.1e-32 144.1 210 53.3
CDE02G3264 Ceratophyllum demersum HOM05D003278 ORTHO05D003738 1.5e-32 143.7 186 43.0
TWI75G0242 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 1.5e-32 143.7 203 47.8
CSS0002178 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 1.9e-32 143.3 192 50.0
Gorai.008G156400 Gossypium raimondii HOM05D003968 ORTHO05D004077 2.5e-32 142.9 196 65.8
Sed0024018 Sechium edule HOM05D003968 ORTHO05D004077 3.3e-32 142.5 195 64.6
Gohir.A12G140400 Gossypium hirsutum HOM05D003968 ORTHO05D004077 9.6e-32 141.0 197 66.5
AL4G29180 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 1.6e-31 140.2 185 56.2
COL.COLO4_11740 Corchorus olitorius HOM05D003968 ORTHO05D004077 2.1e-31 139.8 208 53.4
CARHR127520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 2.8e-31 139.4 185 56.2
Lalb_Chr04g0257091 Lupinus albus HOM05D003968 ORTHO05D004077 3.6e-31 139.0 197 61.4
Nitab4.5_0007554g0020 Nicotiana tabacum HOM05D003968 ORTHO05D004077 3.6e-31 139.0 196 45.9
Sabra01G0044600 Salix brachista HOM05D003968 ORTHO05D004077 3.6e-31 139.0 200 48.5
Psat0s2399g0040 Pisum sativum HOM05D003968 ORTHO05D004077 4.8e-31 138.7 144 54.9
PSO478G1150 Papaver somniferum HOM05D003968 ORTHO05D004077 8.1e-31 137.9 194 59.8
vmacro22632 Vaccinium macrocarpon HOM05D003968 ORTHO05D004077 8.1e-31 137.9 199 59.3
PSO017G3780 Papaver somniferum HOM05D003968 ORTHO05D004077 1.1e-30 137.5 194 59.8
HanXRQChr12g0362341 Helianthus annuus HOM05D003968 ORTHO05D004077 1.4e-30 137.1 181 63.0
TWI18G0914 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 1.4e-30 137.1 202 46.0
Sc11g0000210 Simmondsia chinensis HOM05D003968 ORTHO05D004077 2.4e-30 136.3 224 36.6
Thhalv10017284m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 4.0e-30 135.6 187 56.7
FAN17G1317 Fragaria x ananassa HOM05D003968 ORTHO05D004077 6.9e-30 134.8 248 53.2
AT2G33510 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 1.2e-29 134.0 186 58.1
Carub.0004s1514 Capsella rubella HOM05D003968 ORTHO05D004077 1.2e-29 134.0 191 57.6
TPR.G15634 Trifolium pratense HOM05D003968 ORTHO05D004077 1.2e-29 134.0 193 60.6
THA.LOC104820530 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 1.5e-29 133.7 191 46.1
ATR0582G076 Amborella trichopoda HOM05D003968 ORTHO05D004077 2.0e-29 133.3 179 45.8
Cpa.g.sc123.52 Carica papaya HOM05D003968 ORTHO05D004077 5.8e-29 131.7 225 44.0
THA.LOC104814203 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 5.8e-29 131.7 201 45.3
CSS0048086 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 7.6e-29 131.3 202 59.9
CAN.G1277.6 Capsicum annuum HOM05D003968 ORTHO05D004077 9.9e-29 131.0 180 52.2
Lj1g0012774 Lotus japonicus HOM05D003968 ORTHO05D004077 9.9e-29 131.0 212 41.0
ECA233G5077 Erigeron canadensis HOM05D003968 ORTHO05D004077 1.3e-28 130.6 194 60.8
Lalb_Chr14g0375131 Lupinus albus HOM05D003968 ORTHO05D004077 1.3e-28 130.6 189 54.5
A03p18770 Brassica napus HOM05D003968 ORTHO05D004077 1.7e-28 130.2 186 52.7
Peaxi162Scf00758g00054 Petunia axillaris HOM05D003968 ORTHO05D004077 1.7e-28 130.2 194 58.2
Prupe.1G219000 Prunus persica HOM05D003968 ORTHO05D004077 2.2e-28 129.8 222 40.5
MSTRG.8041 Avicennia marina HOM05D003968 ORTHO05D004077 2.9e-28 129.4 192 44.8
BcaB02g10569 Brassica carinata HOM05D003968 ORTHO05D004077 2.9e-28 129.4 196 56.6
BcaC02g11436 Brassica carinata HOM05D003968 ORTHO05D004077 2.9e-28 129.4 198 59.1
A05p12030 Brassica napus HOM05D003968 ORTHO05D004077 2.9e-28 129.4 191 55.0
C04p15610 Brassica napus HOM05D003968 ORTHO05D004077 2.9e-28 129.4 198 59.1
BraA03t11137Z Brassica rapa HOM05D003968 ORTHO05D004077 2.9e-28 129.4 186 52.7
BcaB01g03931 Brassica carinata HOM05D003968 ORTHO05D004077 4.9e-28 128.6 187 53.5
MBI11_g37080_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 4.9e-28 128.6 152 52.0
MD16G1126900 Malus domestica HOM05D003968 ORTHO05D004077 6.4e-28 128.3 217 48.8
BcaC01g05837 Brassica carinata HOM05D003968 ORTHO05D004077 8.4e-28 127.9 186 52.7
C03p21930 Brassica napus HOM05D003968 ORTHO05D004077 8.4e-28 127.9 186 52.7
Lj6C835T0 Lonicera japonica HOM05D003968 ORTHO05D004077 8.4e-28 127.9 194 43.8
MD13G1126400 Malus domestica HOM05D003968 ORTHO05D004077 8.4e-28 127.9 212 50.9
Peaxi162Scf00128g01760 Petunia axillaris HOM05D003968 ORTHO05D004077 8.4e-28 127.9 205 40.0
Sp4g15850 Schrenkiella parvula HOM05D003968 ORTHO05D004077 8.4e-28 127.9 190 50.5
Actinidia22131 Actinidia chinensis HOM05D003968 ORTHO05D004077 1.1e-27 127.5 188 56.9
BcaC02g07799 Brassica carinata HOM05D003968 ORTHO05D004077 1.1e-27 127.5 195 52.8
HanXRQChr08g0210131 Helianthus annuus HOM05D003968 ORTHO05D004077 1.1e-27 127.5 200 57.5
Oeu003280.1 Olea europaea HOM05D003968 ORTHO05D004077 1.4e-27 127.1 198 38.4
unitig_747.g21116 Utricularia gibba HOM05D003968 ORTHO05D004077 2.4e-27 126.3 200 37.5
C04p63030 Brassica napus HOM05D003968 ORTHO05D004077 3.2e-27 125.9 194 52.1
Medtr7g005500 Medicago truncatula HOM05D003968 ORTHO05D004077 3.2e-27 125.9 205 49.8
Lsat_1_v5_gn_4_1260 Lactuca sativa HOM05D003968 ORTHO05D004077 4.2e-27 125.6 194 54.6
Nitab4.5_0001600g0080 Nicotiana tabacum HOM05D003968 ORTHO05D004077 4.2e-27 125.6 183 45.9
MSTRG.468 Avicennia marina HOM05D003968 ORTHO05D004077 5.4e-27 125.2 209 36.8
FAN07G1723 Fragaria x ananassa HOM05D003968 ORTHO05D004077 5.4e-27 125.2 240 49.6
Ah.03g135740 Amaranthus hybridus HOM05D003968 ORTHO05D004077 7.1e-27 124.8 223 48.9
A04p25820 Brassica napus HOM05D003968 ORTHO05D004077 9.3e-27 124.4 189 52.9
Aa31sc415G10 Aethionema arabicum HOM05D003968 ORTHO05D004077 1.2e-26 124.0 187 51.9
MELO3C022347.2 Cucumis melo HOM05D003968 ORTHO05D004077 1.6e-26 123.6 210 44.8
CsaV3_6G007850 Cucumis sativus L. HOM05D003968 ORTHO05D004077 1.6e-26 123.6 210 47.1
Aa31LG9G13440 Aethionema arabicum HOM05D003968 ORTHO05D004077 2.1e-26 123.2 178 50.0
Migut.K01036 Erythranthe guttata HOM05D003968 ORTHO05D004077 3.5e-26 122.5 204 43.1
Lsat_1_v5_gn_8_147160 Lactuca sativa HOM05D003968 ORTHO05D004077 3.5e-26 122.5 238 50.8
PSO675G4434 Papaver somniferum HOM05D003968 ORTHO05D004077 3.5e-26 122.5 183 48.1
BcaB06g28694 Brassica carinata HOM05D003968 ORTHO05D004077 1.0e-25 120.9 207 46.4
Ah.02g131150 Amaranthus hybridus HOM05D003968 ORTHO05D004077 1.3e-25 120.6 136 47.8
CSS0023603 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 1.3e-25 120.6 197 41.1
ClCG06G001810 Citrullus lanatus HOM05D003968 ORTHO05D004077 1.3e-25 120.6 213 46.0
SalBow2G1659 Salvia bowleyana HOM05D003968 ORTHO05D004077 1.3e-25 120.6 202 39.6
Hund25497 Selenicereus undatus HOM05D003968 ORTHO05D004077 1.3e-25 120.6 211 48.3
PSO229G0040 Papaver somniferum HOM05D003968 ORTHO05D004077 1.8e-25 120.2 183 45.4
BraA04t18084Z Brassica rapa HOM05D003968 ORTHO05D004077 8.7e-25 117.9 199 49.7
CsaV3_4G002470 Cucumis sativus L. HOM05D003968 ORTHO05D004077 1.1e-24 117.5 149 69.1
Sp1g24250 Schrenkiella parvula HOM05D003968 ORTHO05D004077 1.1e-24 117.5 186 50.0
BolC4t27780H Brassica oleracea HOM05D003968 ORTHO05D004077 1.9e-24 116.7 207 48.8
BraA05t20145Z Brassica rapa HOM05D003968 ORTHO05D004077 1.9e-24 116.7 204 48.0
THA.LOC104812600 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 2.5e-24 116.3 195 46.2
unitig_749.g13321 Utricularia gibba HOM05D003968 ORTHO05D004077 3.3e-24 115.9 184 38.0
DCAR_024638 Daucus carota HOM05D003968 ORTHO05D004077 4.3e-24 115.5 236 47.0
BolC4t23129H Brassica oleracea HOM05D003968 ORTHO05D004077 5.6e-24 115.2 211 54.5
Thhalv10008849m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 5.6e-24 115.2 188 51.1
A07p11490 Brassica napus HOM05D003968 ORTHO05D004077 1.3e-23 114.0 186 36.6
BraA07t28938Z Brassica rapa HOM05D003968 ORTHO05D004077 1.3e-23 114.0 186 36.6
MELO3C017796.2 Cucumis melo HOM05D003968 ORTHO05D004077 1.3e-23 114.0 160 65.6
Cc11_g17440 Coffea canephora HOM05D003968 ORTHO05D004077 2.1e-23 113.2 231 49.8
Carub.0001s2650 Capsella rubella HOM05D003968 ORTHO05D004077 8.1e-23 111.3 173 50.3
CARHR027520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 8.1e-23 111.3 179 45.8
Solyc01g009770.3 Solanum lycopersicum HOM05D003968 ORTHO05D004077 1.4e-22 110.5 204 37.3
BraA08t34544Z Brassica rapa HOM05D003968 ORTHO05D004077 1.8e-22 110.2 182 42.3
BcaB03g13960 Brassica carinata HOM05D003968 ORTHO05D004077 2.4e-22 109.8 184 35.3
Sed0012192 Sechium edule HOM05D003968 ORTHO05D004077 2.4e-22 109.8 205 44.9
unitig_26.g10423 Utricularia gibba HOM05D003968 ORTHO05D004077 2.4e-22 109.8 142 41.5
AT1G28070 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 4.0e-22 109.0 180 53.9
Sopen01g005310 Solanum pennellii HOM05D003968 ORTHO05D004077 2.6e-21 106.3 216 39.4
TAR622G0782 Trochodendron aralioides HOM05D003968 ORTHO05D004077 5.8e-21 105.1 184 38.0
A08p25930 Brassica napus HOM05D003968 ORTHO05D004077 9.9e-21 104.4 182 40.1
PGSC0003DMG400030000 Solanum tuberosum HOM05D003968 ORTHO05D004077 2.9e-20 102.8 211 38.4
HPP92_023087 Vanilla planifolia HOM05D003968 ORTHO05D004077 2.9e-20 102.8 213 43.7
BolC3t19720H Brassica oleracea HOM05D003968 ORTHO05D004077 3.8e-20 102.4 182 40.7
BcaC06g35328 Brassica carinata HOM05D003968 ORTHO05D004077 4.9e-20 102.1 174 36.2
C07p17340 Brassica napus HOM05D003968 ORTHO05D004077 4.9e-20 102.1 174 36.2
BolC7t42238H Brassica oleracea HOM05D003968 ORTHO05D004077 4.9e-20 102.1 174 36.2
BcaC01g00004 Brassica carinata HOM05D003968 ORTHO05D004077 2.1e-18 96.7 182 39.0
C03p74720 Brassica napus HOM05D003968 ORTHO05D004077 2.7e-18 96.3 182 40.1
Rhsim12G0020700 Rhododendron simsii HOM05D003968 ORTHO05D004077 6.7e-17 91.7 117 48.7
SGA_v2.0_scaffold80G25944 Striga asiatica HOM05D003968 ORTHO05D004077 2.5e-16 89.7 116 47.4
BcaC05g26810 Brassica carinata HOM05D003968 ORTHO05D004077 5.6e-16 88.6 175 34.9
HPP92_011550 Vanilla planifolia HOM05D003968 ORTHO05D004077 7.4e-16 88.2 158 51.9
A09p38020 Brassica napus HOM05D003968 ORTHO05D004077 2.4e-14 83.2 164 43.3
BraA09t39312Z Brassica rapa HOM05D003968 ORTHO05D004077 2.4e-14 83.2 164 43.3
MBI01_g34379_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 2.4e-14 83.2 129 41.1
BcaC05g26624 Brassica carinata HOM05D003968 ORTHO05D004077 1.2e-13 80.9 164 43.9
C05p26740 Brassica napus HOM05D003968 ORTHO05D004077 1.2e-13 80.9 164 43.9
Oeu019428.1 Olea europaea HOM05D003968 ORTHO05D004077 8.4e-12 74.7 194 29.9
CSS0031909 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 1.1e-11 74.3 227 31.3
Gohir.A01G021200 Gossypium hirsutum HOM05D003968 ORTHO05D004077 5.5e-11 72.0 196 50.0
Gorai.002G022000 Gossypium raimondii HOM05D003968 ORTHO05D004077 9.3e-11 71.2 196 49.0
Gohir.D01G019600 Gossypium hirsutum HOM05D003968 ORTHO05D004077 1.2e-10 70.9 196 49.0
CDE09G1092 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 6.1e-10 68.6 189 31.7
Os02g0516400 Oryza sativa ssp. japonica HOM05D003968 ORTHO05D004077 6.1e-10 68.6 83 39.8
HPP92_006446 Vanilla planifolia HOM05D003968 ORTHO05D004077 1.3e-09 67.4 120 43.3
BolC5t31398H Brassica oleracea HOM05D003968 ORTHO05D004077 3.0e-09 66.2 139 41.7
SEGI_23541 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 1.1e-08 64.3 156 29.5
CDE02G1122 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 3.3e-08 62.8 184 30.4
SEGI_36735 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 5.7e-08 62.0 159 28.9
SMO347G0048 Selaginella moellendorffii HOM05D022619 ORTHO05D026045 1.3e-07 60.8 157 49.0
BcaC05g26622 Brassica carinata HOM05D003968 ORTHO05D004077 3.7e-07 59.3 37 59.5
AL1G41580 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 4.8e-07 58.9 35 65.7
SEGI_14851 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 1.1e-06 57.8 159 28.9
Atru.chr1.737 Acer truncatum HOM05D003968 ORTHO05D004077 2.4e-06 56.6 29 72.4
Pp3c27_4970 Physcomitrium patens HOM05D013579 ORTHO05D004077 3.1e-06 56.2 42 52.4
SEGI_09126 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 4.1e-06 55.8 159 28.3
SEGI_34313 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 5.3e-06 55.5 159 28.3
Pp3c16_12300 Physcomitrium patens HOM05D013579 ORTHO05D001508 6.9e-06 55.1 42 52.4
Mapoly0029s0076 Marchantia polymorpha HOM05D013579 ORTHO05D015305 9.0e-06 54.7 55 43.6
SEGI_03464 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 9.0e-06 54.7 189 26.5


User provided reference genes

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