Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G03210 Aquilegia oxysepala HOM05D001020 ORTHO05D077509 3.2e-62 241.5 116 100.0
Nitab4.5_0004343g0030 Nicotiana tabacum HOM05D001020 ORTHO05D001137 7.0e-09 64.3 45 66.7
Nitab4.5_0000044g0130 Nicotiana tabacum HOM05D001020 ORTHO05D001137 2.0e-08 62.8 45 64.4
Peaxi162Scf00409g00093 Petunia axillaris HOM05D001020 ORTHO05D001137 2.0e-08 62.8 45 64.4
COL.COLO4_15988 Corchorus olitorius HOM05D001020 ORTHO05D001137 3.5e-08 62.0 78 42.3
CAN.G793.42 Capsicum annuum HOM05D001020 ORTHO05D001137 7.7e-08 60.8 45 62.2
DCAR_030740 Daucus carota HOM05D001020 ORTHO05D001137 7.7e-08 60.8 88 39.8
Cfa016745 Carpinus fangiana HOM05D001020 ORTHO05D001137 1.0e-07 60.5 78 39.7
Sc24g0002390 Simmondsia chinensis HOM05D001020 ORTHO05D001137 1.3e-07 60.1 57 54.4
COL.COLO4_23626 Corchorus olitorius HOM05D001020 ORTHO05D001137 1.7e-07 59.7 45 60.0
Dinv24155 Davidia involucrata HOM05D001020 ORTHO05D001137 1.7e-07 59.7 123 35.8
BcaB01g01498 Brassica carinata HOM05D001020 ORTHO05D001137 2.3e-07 59.3 79 38.0
DCAR_002322 Daucus carota HOM05D001020 ORTHO05D001137 2.3e-07 59.3 45 57.8
Prupe.1G218700 Prunus persica HOM05D001020 ORTHO05D001137 2.9e-07 58.9 51 58.8
Aa31LG5G3710 Aethionema arabicum HOM05D001020 ORTHO05D001137 3.8e-07 58.5 45 60.0
AUR62007684 Chenopodium quinoa HOM05D001020 ORTHO05D001137 3.8e-07 58.5 53 52.8
AUR62013455 Chenopodium quinoa HOM05D001020 ORTHO05D001137 3.8e-07 58.5 53 52.8
Thhalv10012951m.g Eutrema salsugineum HOM05D001020 ORTHO05D001137 5.0e-07 58.2 45 55.6
SMO198G0049 Selaginella moellendorffii HOM05D001020 ORTHO05D001137 5.0e-07 58.2 47 55.3
Solyc09g089940.1 Solanum lycopersicum HOM05D001020 ORTHO05D001137 5.0e-07 58.2 51 56.9
Sopen09g032870 Solanum pennellii HOM05D001020 ORTHO05D001137 5.0e-07 58.2 51 56.9
PGSC0003DMG400017230 Solanum tuberosum HOM05D001020 ORTHO05D001137 5.0e-07 58.2 51 56.9
Thecc.04G267200 Theobroma cacao HOM05D001020 ORTHO05D001137 5.0e-07 58.2 78 42.3
Ah.05g168920 Amaranthus hybridus HOM05D001020 ORTHO05D001137 6.6e-07 57.8 53 52.8
Cc03_g05420 Coffea canephora HOM05D001020 ORTHO05D001137 6.6e-07 57.8 47 59.6
THA.LOC104825473 Tarenaya hassleriana HOM05D001020 ORTHO05D001137 6.6e-07 57.8 51 52.9
arahy.Tifrunner.gnm1.ann1.3R7UBK Arachis hypogaea HOM05D001020 ORTHO05D001137 8.6e-07 57.4 78 42.3
arahy.Tifrunner.gnm1.ann1.A5SP47 Arachis hypogaea HOM05D001020 ORTHO05D001137 8.6e-07 57.4 78 42.3
CARHR200250 Cardamine hirsuta HOM05D001020 ORTHO05D001137 8.6e-07 57.4 64 46.9
Cc07_g00040 Coffea canephora HOM05D001020 ORTHO05D001137 8.6e-07 57.4 53 52.8
COL.COLO4_12825 Corchorus olitorius HOM05D001020 ORTHO05D001137 8.6e-07 57.4 45 57.8
SGA_v2.0_scaffold106G30716 Striga asiatica HOM05D001020 ORTHO05D001137 8.6e-07 57.4 53 52.8
CiPaw.02G113300 Carya illinoinensis HOM05D001020 ORTHO05D001137 1.1e-06 57.0 78 39.7
PSO017G6483 Papaver somniferum HOM05D001020 ORTHO05D001137 1.1e-06 57.0 45 60.0
SGA_v2.0_scaffold41G15859 Striga asiatica HOM05D001020 ORTHO05D001137 1.1e-06 57.0 53 50.9
Atru.chr4.2081 Acer truncatum HOM05D001020 ORTHO05D001137 1.5e-06 56.6 53 50.9
arahy.Tifrunner.gnm1.ann1.19AV4Q Arachis hypogaea HOM05D001020 ORTHO05D001137 1.5e-06 56.6 78 41.0
CARHR200260 Cardamine hirsuta HOM05D001020 ORTHO05D001137 1.5e-06 56.6 45 53.3
DCAR_002346 Daucus carota HOM05D001020 ORTHO05D001137 1.5e-06 56.6 45 55.6
THA.LOC104801086 Tarenaya hassleriana HOM05D001020 ORTHO05D001137 1.5e-06 56.6 45 57.8
BraA09t38418Z Brassica rapa HOM05D001020 ORTHO05D001137 1.9e-06 56.2 51 51.0
CARHR148470 Cardamine hirsuta HOM05D001020 ORTHO05D001137 1.9e-06 56.2 45 55.6
HanXRQChr13g0422141 Helianthus annuus HOM05D001020 ORTHO05D001137 1.9e-06 56.2 53 49.1
Mapoly0087s0003 Marchantia polymorpha HOM05D001020 ORTHO05D001137 1.9e-06 56.2 54 48.1
Nn1g01997 Nelumbo nucifera HOM05D001020 ORTHO05D001137 1.9e-06 56.2 50 50.0
AT5G13210 Arabidopsis thaliana HOM05D001020 ORTHO05D001137 2.5e-06 55.8 51 51.0
CSS0048799 Camellia sinensis var. sinensis HOM05D001020 ORTHO05D001137 2.5e-06 55.8 53 50.9
COL.COLO4_15986 Corchorus olitorius HOM05D001020 ORTHO05D001137 2.5e-06 55.8 53 52.8
PSO017G0125 Papaver somniferum HOM05D001020 ORTHO05D001137 2.5e-06 55.8 53 49.1
AL6G23820 Arabidopsis lyrata HOM05D001020 ORTHO05D001137 3.3e-06 55.5 48 52.1
arahy.Tifrunner.gnm1.ann1.GRSA84 Arachis hypogaea HOM05D001020 ORTHO05D001137 3.3e-06 55.5 78 41.0
arahy.Tifrunner.gnm1.ann1.I17ZJY Arachis hypogaea HOM05D001020 ORTHO05D001137 3.3e-06 55.5 78 39.7
DCAR_002345 Daucus carota HOM05D001020 ORTHO05D001137 3.3e-06 55.5 53 50.9
DCAR_002348 Daucus carota HOM05D001020 ORTHO05D001137 3.3e-06 55.5 45 53.3
Duzib151G0436 Durio zibethinus HOM05D001020 ORTHO05D001137 3.3e-06 55.5 45 57.8
SalBow5G5676 Salvia bowleyana HOM05D001020 ORTHO05D001137 3.3e-06 55.5 53 50.9
Sp2g08280 Schrenkiella parvula HOM05D001020 ORTHO05D001137 3.3e-06 55.5 47 59.6
Sed0009996 Sechium edule HOM05D001020 ORTHO05D001137 3.3e-06 55.5 51 52.9
SMO198G0018 Selaginella moellendorffii HOM05D001020 ORTHO05D001137 3.3e-06 55.5 51 52.9
Cfa022561 Carpinus fangiana HOM05D001020 ORTHO05D001137 4.2e-06 55.1 53 50.9
Haze_11359 Corylus avellana HOM05D001020 ORTHO05D001137 4.2e-06 55.1 53 50.9
Gohir.A10G107000 Gossypium hirsutum HOM05D001020 ORTHO05D001137 4.2e-06 55.1 53 49.1
Lj2g0021750 Lotus japonicus HOM05D001020 ORTHO05D001137 4.2e-06 55.1 77 39.0
QL06p001797 Quercus lobata HOM05D001020 ORTHO05D001137 4.2e-06 55.1 45 55.6
Sed0026107 Sechium edule HOM05D001020 ORTHO05D001137 4.2e-06 55.1 45 55.6
C09p36160 Brassica napus HOM05D001020 ORTHO05D001137 5.5e-06 54.7 45 53.3
Carub.0008s0520 Capsella rubella HOM05D001020 ORTHO05D001137 5.5e-06 54.7 45 55.6
Dinv14813 Davidia involucrata HOM05D001020 ORTHO05D001137 5.5e-06 54.7 57 45.6
Peaxi162Scf00316g00001 Petunia axillaris HOM05D001020 ORTHO05D001137 5.5e-06 54.7 53 50.9
Zm00001eb206670 Zea mays HOM05D001020 ORTHO05D001137 5.5e-06 54.7 45 53.3
BcaC04g21056 Brassica carinata HOM05D001020 ORTHO05D001137 7.2e-06 54.3 46 54.3
Haze_04908 Corylus avellana HOM05D001020 ORTHO05D001137 7.2e-06 54.3 45 57.8
DCAR_030720 Daucus carota HOM05D001020 ORTHO05D001137 7.2e-06 54.3 45 51.1
Hma1.2p1_0459F.1_g157190 Hydrangea macrophylla HOM05D001020 ORTHO05D001137 7.2e-06 54.3 45 55.6
Lj6C663G9 Lonicera japonica HOM05D001020 ORTHO05D001137 7.2e-06 54.3 53 52.8
PSO170G2024 Papaver somniferum HOM05D001020 ORTHO05D001137 7.2e-06 54.3 53 50.9
PSO832G3618 Papaver somniferum HOM05D001020 ORTHO05D001137 7.2e-06 54.3 45 57.8
SGA_v2.0_scaffold21G09639 Striga asiatica HOM05D001020 ORTHO05D001137 7.2e-06 54.3 53 49.1
GSVIVG01027776001 Vitis vinifera HOM05D001020 ORTHO05D001137 7.2e-06 54.3 53 49.1
Aa31LG3G14450 Aethionema arabicum HOM05D001020 ORTHO05D001137 9.5e-06 53.9 45 51.1
arahy.Tifrunner.gnm1.ann1.FE9TG6 Arachis hypogaea HOM05D001020 ORTHO05D001137 9.5e-06 53.9 78 39.7
BcaC04g19137 Brassica carinata HOM05D001020 ORTHO05D001137 9.5e-06 53.9 45 53.3
A09p28570 Brassica napus HOM05D001020 ORTHO05D001137 9.5e-06 53.9 48 52.1
C09p63870 Brassica napus HOM05D001020 ORTHO05D001137 9.5e-06 53.9 45 53.3
BolC9t59227H Brassica oleracea HOM05D001020 ORTHO05D001137 9.5e-06 53.9 45 53.3
Cfa022562 Carpinus fangiana HOM05D001020 ORTHO05D001137 9.5e-06 53.9 45 53.3
Cfa022563 Carpinus fangiana HOM05D001020 ORTHO05D001137 9.5e-06 53.9 45 53.3
DCAR_030719 Daucus carota HOM05D001020 ORTHO05D001137 9.5e-06 53.9 47 53.2
Dinv33703 Davidia involucrata HOM05D001020 ORTHO05D001137 9.5e-06 53.9 53 47.2
Lj6P835T13 Lonicera japonica HOM05D001020 ORTHO05D001137 9.5e-06 53.9 53 47.2
MD00G1095100 Malus domestica HOM05D001020 ORTHO05D001137 9.5e-06 53.9 45 57.8
MD16G1127300 Malus domestica HOM05D001020 ORTHO05D001137 9.5e-06 53.9 51 52.9
Os02g0179600 Oryza sativa ssp. japonica HOM05D001020 ORTHO05D001137 9.5e-06 53.9 45 53.3
SGA_v2.0_scaffold106G30714 Striga asiatica HOM05D001020 ORTHO05D001137 9.5e-06 53.9 53 50.9
SGA_v2.0_scaffold108G30957 Striga asiatica HOM05D001020 ORTHO05D001137 9.5e-06 53.9 53 50.9


User provided reference genes

Program Settings