Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G03195 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 0.0e+00 2321.2 1159 100.0
Aqoxy3G03508 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 0.0e+00 2216.8 1159 95.5
Aqoxy7G01840 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 0.0e+00 1838.5 964 97.1
PSO017G0156 Papaver somniferum HOM05D004959 ORTHO05D005961 6.5e-280 968.0 1168 48.2
PSO478G1937 Papaver somniferum HOM05D004959 ORTHO05D005961 1.2e-278 963.8 1161 48.0
Nn3g21093 Nelumbo nucifera HOM05D004959 ORTHO05D005961 2.3e-277 959.5 1167 47.3
GSVIVG01032944001 Vitis vinifera HOM05D004959 ORTHO05D005961 1.1e-263 914.1 1167 44.9
Dinv04263 Davidia involucrata HOM05D004959 ORTHO05D005961 2.5e-263 912.9 1170 46.0
TAR622G1187 Trochodendron aralioides HOM05D004959 ORTHO05D005961 1.6e-262 910.2 998 49.9
Dinv06304 Davidia involucrata HOM05D004959 ORTHO05D005961 7.9e-262 907.9 1171 45.7
MBI07_g42017_MAGBIO Magnolia biondii HOM05D004959 ORTHO05D005961 6.7e-261 904.8 1264 43.7
Potri.018G118800 Populus trichocarpa HOM05D004959 ORTHO05D005961 1.3e-256 890.6 1179 43.3
QL04p014830 Quercus lobata HOM05D004959 ORTHO05D005961 5.0e-256 888.6 1178 43.0
QL04p014466 Quercus lobata HOM05D004959 ORTHO05D005961 1.9e-255 886.7 1178 43.0
Cfa000659 Carpinus fangiana HOM05D004959 ORTHO05D005961 9.4e-255 884.4 1167 42.8
Sabra18G0102400 Salix brachista HOM05D004959 ORTHO05D005961 1.7e-251 873.6 1170 42.2
Prupe.3G104300 Prunus persica HOM05D004959 ORTHO05D005961 1.2e-241 840.9 1165 41.6
TWI63G1138 Tripterygium wilfordii HOM05D004959 ORTHO05D005961 2.0e-236 823.5 1173 42.0
Aqoxy5G03191 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 3.4e-236 822.8 508 81.1
Thecc.02G004800 Theobroma cacao HOM05D004959 ORTHO05D005961 9.8e-236 821.2 1164 41.1
Manes.16G050600 Manihot esculenta HOM05D004959 ORTHO05D005961 1.1e-234 817.8 1175 40.5
Hma1.2p1_0137F.1_g062550 Hydrangea macrophylla HOM05D004959 ORTHO05D005961 3.1e-234 816.2 1182 43.1
MD13G1224700 Malus domestica HOM05D004959 ORTHO05D005961 4.3e-231 805.8 1152 41.1
Cpa.g.sc30.122 Carica papaya HOM05D004959 ORTHO05D005961 4.1e-226 789.3 1161 40.8
Rhsim02G0134800 Rhododendron simsii HOM05D004959 ORTHO05D005961 5.8e-220 768.8 1163 40.8
ClCG09G011850 Citrullus lanatus HOM05D004959 ORTHO05D005961 1.7e-219 767.3 1165 39.5
FvH4_4g05080 Fragaria vesca HOM05D004959 ORTHO05D005961 1.9e-218 763.8 1166 38.9
Actinidia07601 Actinidia chinensis HOM05D004959 ORTHO05D005961 2.3e-216 756.9 1160 40.5
vmacro15931 Vaccinium macrocarpon HOM05D004959 ORTHO05D005961 1.9e-215 753.8 1194 39.5
Sed0018634 Sechium edule HOM05D004959 ORTHO05D005961 7.3e-215 751.9 1165 38.6
FAN12G3376 Fragaria x ananassa HOM05D004959 ORTHO05D005961 1.6e-214 750.7 1173 38.6
MELO3C026444.2 Cucumis melo HOM05D004959 ORTHO05D005961 1.8e-213 747.3 1172 38.5
Rhsim01G0101500 Rhododendron simsii HOM05D004959 ORTHO05D005961 2.3e-213 746.9 1179 39.8
Gohir.D12G047700 Gossypium hirsutum HOM05D004959 ORTHO05D005961 6.8e-213 745.3 1166 38.2
ATR0037G053 Amborella trichopoda HOM05D004959 ORTHO05D005961 1.2e-212 744.6 1208 38.8
CsaV3_5G015760 Cucumis sativus L. HOM05D004959 ORTHO05D005961 8.3e-211 738.4 1167 38.6
Sc10g0002790 Simmondsia chinensis HOM05D004959 ORTHO05D005961 2.1e-209 733.8 1166 39.4
Gorai.008G050400 Gossypium raimondii HOM05D004959 ORTHO05D005961 2.3e-208 730.3 1199 37.3
Gohir.A12G049000 Gossypium hirsutum HOM05D004959 ORTHO05D005961 5.6e-207 725.7 1198 37.5
FAN22G0965 Fragaria x ananassa HOM05D004959 ORTHO05D005961 2.3e-205 720.3 1171 37.7
RcHm_v2.0_Chr4g0396011 Rosa chinensis HOM05D004959 ORTHO05D005961 1.5e-204 717.6 1159 37.4
Lj3A850G96 Lonicera japonica HOM05D004959 ORTHO05D005961 3.4e-204 716.5 1189 39.4
COL.COLO4_18025 Corchorus olitorius HOM05D004959 ORTHO05D005961 9.2e-202 708.4 1178 36.8
FAN17G1136 Fragaria x ananassa HOM05D004959 ORTHO05D005961 2.3e-200 703.7 1168 37.5
CiPaw.10G061900 Carya illinoinensis HOM05D004959 ORTHO05D005961 2.6e-196 690.3 981 41.4
Duzib248G0683 Durio zibethinus HOM05D004959 ORTHO05D005961 2.9e-195 686.8 1102 38.4
CANSAT25G2352 Cannabis sativa HOM05D004959 ORTHO05D005961 2.7e-193 680.2 1178 37.4
EL10Ac2g04300 Beta vulgaris HOM05D004959 ORTHO05D005961 6.6e-192 675.6 1165 36.8
PGR142G3977 Punica granatum HOM05D004959 ORTHO05D005961 8.7e-192 675.2 1170 37.0
PGSC0003DMG400003329 Solanum tuberosum HOM05D004959 ORTHO05D005961 1.1e-191 674.9 1180 37.3
Cc04_g10880 Coffea canephora HOM05D004959 ORTHO05D005961 2.4e-189 667.2 1178 38.0
Sopen02g014720 Solanum pennellii HOM05D004959 ORTHO05D005961 2.6e-188 663.7 1185 36.8
Migut.E00705 Erythranthe guttata HOM05D004959 ORTHO05D005961 9.9e-188 661.8 1165 37.2
Glyma.19G032700 Glycine max HOM05D004959 ORTHO05D005961 9.9e-188 661.8 1164 35.2
Haze_06165 Corylus avellana HOM05D004959 ORTHO05D005961 3.8e-187 659.8 1100 37.5
Solyc02g064590.2 Solanum lycopersicum HOM05D004959 ORTHO05D005961 5.4e-186 656.0 1187 36.4
Solyc02g064620.2 Solanum lycopersicum HOM05D004959 ORTHO05D005961 5.4e-186 656.0 1187 36.4
Nitab4.5_0000036g0080 Nicotiana tabacum HOM05D004959 ORTHO05D005961 1.6e-185 654.4 1187 36.5
Oeu021359.1 Olea europaea HOM05D004959 ORTHO05D005961 2.1e-185 654.1 1177 37.0
VMungo0464G0163 Vigna mungo HOM05D004959 ORTHO05D005961 2.1e-185 654.1 1176 36.0
AUR62012329 Chenopodium quinoa HOM05D004959 ORTHO05D005961 4.6e-185 652.9 1180 35.3
Phvul.004G026300 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 4.6e-185 652.9 1177 35.8
AUR62022971 Chenopodium quinoa HOM05D004959 ORTHO05D005961 7.9e-185 652.1 1176 35.4
Eucgr.I01567 Eucalyptus grandis HOM05D004959 ORTHO05D005961 1.3e-184 651.4 1176 36.1
HanXRQChr12g0366411 Helianthus annuus HOM05D004959 ORTHO05D005961 2.3e-184 650.6 1170 36.7
HPP92_024644 Vanilla planifolia HOM05D004959 ORTHO05D005961 3.4e-180 636.7 1218 36.1
Nitab4.5_0010326g0010 Nicotiana tabacum HOM05D004959 ORTHO05D005961 1.3e-179 634.8 1158 36.4
Migut.E00612 Erythranthe guttata HOM05D004959 ORTHO05D005961 4.2e-178 629.8 1165 36.2
AL7G33790 Arabidopsis lyrata HOM05D004959 ORTHO05D005961 5.5e-178 629.4 1169 34.0
BolC1t01373H Brassica oleracea HOM05D004959 ORTHO05D005961 1.0e-176 625.2 1172 35.4
ECA233G2209 Erigeron canadensis HOM05D004959 ORTHO05D005961 3.0e-176 623.6 1179 35.8
AT4G20060 Arabidopsis thaliana HOM05D004959 ORTHO05D005961 3.9e-176 623.2 1171 34.2
C01p14060 Brassica napus HOM05D004959 ORTHO05D005961 3.3e-175 620.2 1165 35.2
DCAR_026905 Daucus carota HOM05D004959 ORTHO05D005961 4.8e-174 616.3 1193 35.0
MD16G1229900 Malus domestica HOM05D004959 ORTHO05D005961 1.1e-173 615.1 1056 37.4
BraA01t01128Z Brassica rapa HOM05D004959 ORTHO05D005961 4.0e-173 613.2 1175 34.6
CARHR226870 Cardamine hirsuta HOM05D004959 ORTHO05D005961 9.0e-173 612.1 1172 34.5
Thhalv10024260m.g Eutrema salsugineum HOM05D004959 ORTHO05D005961 2.6e-172 610.5 1173 34.2
Lsat_1_v5_gn_8_33541 Lactuca sativa HOM05D004959 ORTHO05D005961 3.8e-171 606.7 1169 35.6
BcaNung06192 Brassica carinata HOM05D004959 ORTHO05D005961 1.2e-169 601.7 1176 34.2
Carub.0007s2107 Capsella rubella HOM05D004959 ORTHO05D005961 4.6e-169 599.7 1173 33.7
Ah.09g226960 Amaranthus hybridus HOM05D004959 ORTHO05D005961 1.5e-167 594.7 1165 34.2
Atru.chr8.666 Acer truncatum HOM05D004959 ORTHO05D005961 8.2e-166 589.0 944 38.7
Sp7g18520 Schrenkiella parvula HOM05D004959 ORTHO05D005961 9.0e-165 585.5 1169 33.7
Ciclev10014195m.g Citrus clementina HOM05D004959 ORTHO05D005961 4.5e-164 583.2 912 39.7
A01p11860 Brassica napus HOM05D004959 ORTHO05D005961 3.8e-163 580.1 1175 33.6
Aa31LG6G2470 Aethionema arabicum HOM05D004959 ORTHO05D005961 2.5e-162 577.4 1174 33.9
SGA_v2.0_scaffold36G14263 Striga asiatica HOM05D004959 ORTHO05D005961 1.5e-159 568.2 1162 34.0
HanXRQChr04g0121291 Helianthus annuus HOM05D004959 ORTHO05D005961 4.1e-157 560.1 1124 34.9
SEGI_31831 Sequoiadendron giganteum HOM05D004959 ORTHO05D005961 9.0e-157 558.9 1248 31.6
SGA_v2.0_scaffold99G29470 Striga asiatica HOM05D004959 ORTHO05D005961 9.1e-149 532.3 1157 33.5
PSO161G0046 Papaver somniferum HOM05D004959 ORTHO05D005961 2.1e-145 521.2 811 41.3
Zm00001eb126950 Zea mays HOM05D004959 ORTHO05D005961 2.3e-144 517.7 1245 29.5
CSS0032692 Camellia sinensis var. sinensis HOM05D004959 ORTHO05D005961 4.0e-136 490.3 898 36.0
Glyma.13G054500 Glycine max HOM05D004959 ORTHO05D005961 1.3e-131 475.3 965 31.6
Aqoxy5G03189 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 1.4e-112 412.1 221 88.2
Hma1.2p1_0286F.1_g114200 Hydrangea macrophylla HOM05D004959 ORTHO05D005961 1.4e-112 412.1 681 39.1
Peaxi162Scf00449g00320 Petunia axillaris HOM05D004959 ORTHO05D005961 1.6e-108 398.7 896 31.1
SHI28141 Sapria himalayana HOM05D004959 ORTHO05D005961 1.5e-98 365.5 895 30.2
CAN.G370.71 Capsicum annuum HOM05D004959 ORTHO05D005961 4.4e-95 354.0 426 48.6
Pp3c21_2460 Physcomitrium patens HOM05D004959 ORTHO05D005961 7.8e-92 343.2 1284 26.0
Mapoly0306s0002 Marchantia polymorpha HOM05D004959 ORTHO05D005961 2.2e-86 325.1 1273 24.4
Lalb_Chr19g0135221 Lupinus albus HOM05D004959 ORTHO05D005961 1.9e-74 285.4 310 50.0
LjContig00564g0005645 Lotus japonicus HOM05D004959 ORTHO05D005961 3.3e-74 284.6 300 53.0
LjContig00564g0002415 Lotus japonicus HOM05D004959 ORTHO05D005961 7.3e-74 283.5 314 51.6
Medtr4g078330 Medicago truncatula HOM05D004959 ORTHO05D005961 7.3e-74 283.5 299 52.5
Ca_18944_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 4.8e-73 280.8 299 52.5
AagrBONN_evm.TU.Sc2ySwM_228.5373 Anthoceros agrestis HOM05D004959 ORTHO05D005961 1.1e-72 279.6 1136 25.7
Oeu021362.1 Olea europaea HOM05D004959 ORTHO05D005961 3.1e-72 278.1 436 39.0
Psat7g167160 Pisum sativum HOM05D004959 ORTHO05D005961 6.9e-72 276.9 299 51.5
CDE04G1301 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 6.4e-70 270.4 424 39.9
Peaxi162Scf00449g00321 Petunia axillaris HOM05D004959 ORTHO05D005961 7.9e-68 263.5 274 53.6
CDE04G0396 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 2.6e-63 248.4 235 56.6
Lj3g0004583 Lotus japonicus HOM05D004959 ORTHO05D005961 1.7e-62 245.7 300 48.7
arahy.Tifrunner.gnm1.ann1.C6XSUD Arachis hypogaea HOM05D004959 ORTHO05D005961 4.2e-61 241.1 311 44.1
CSS0018526 Camellia sinensis var. sinensis HOM05D004959 ORTHO05D005961 4.2e-61 241.1 235 52.3
arahy.Tifrunner.gnm1.ann1.WXF40H Arachis hypogaea HOM05D004959 ORTHO05D005961 1.6e-60 239.2 326 42.6
PSO478G4754 Papaver somniferum HOM05D004959 ORTHO05D005961 8.7e-59 233.4 190 62.1
BcaB03g11657 Brassica carinata HOM05D004959 ORTHO05D005961 1.1e-50 206.5 356 38.8
Atru.chr8.667 Acer truncatum HOM05D004959 ORTHO05D005961 4.3e-50 204.5 175 58.3
unitig_46.g18488 Utricularia gibba HOM05D004959 ORTHO05D005961 2.1e-49 202.2 304 39.8
LjContig00564g0005363 Lotus japonicus HOM05D004959 ORTHO05D005961 6.5e-46 190.7 175 56.0
TPR.G23000 Trifolium pratense HOM05D004959 ORTHO05D005961 2.5e-42 178.7 167 55.7
SHI28139 Sapria himalayana HOM05D004959 ORTHO05D005961 1.1e-40 173.3 175 49.1
SMO111G0127 Selaginella moellendorffii HOM05D004959 ORTHO05D005961 1.1e-40 173.3 413 32.9
Phvul.005G124450 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 1.8e-40 172.6 174 52.3
BcaNung06193 Brassica carinata HOM05D004959 ORTHO05D005961 4.1e-40 171.4 188 49.5
CDE04G2317 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 3.4e-39 168.3 428 31.5
CBR_g16049 Chara braunii HOM05D004959 ORTHO05D005961 3.2e-37 161.8 361 29.9
Os01g0188200 Oryza sativa ssp. japonica HOM05D004959 ORTHO05D005961 4.7e-28 131.3 232 35.3
Phvul.005G124551 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 6.7e-27 127.5 292 29.8
Aqoxy5G03190 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 2.6e-26 125.6 78 84.6
Psat2g088000 Pisum sativum HOM05D004959 ORTHO05D005961 1.6e-23 116.3 154 48.1
Atru.chr10.384 Acer truncatum HOM05D004959 ORTHO05D005961 2.7e-20 105.5 226 29.2
Phvul.005G124501 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 8.0e-20 104.0 334 25.1
Ca_14573_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 1.8e-16 92.8 111 44.1
Ca_14572_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 9.1e-16 90.5 112 44.6
TPR.G940 Trifolium pratense HOM05D004959 ORTHO05D005961 2.2e-14 85.9 107 47.7
Ca_14567_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 2.9e-14 85.5 95 51.6
Os01g0103700 Oryza sativa ssp. japonica HOM05D004959 ORTHO05D005961 7.5e-10 70.9 106 34.9
BolC3t20554H Brassica oleracea HOM05D004959 ORTHO05D005961 2.3e-06 59.3 50 54.0
BcaC01g00652 Brassica carinata HOM05D004959 ORTHO05D005961 2.9e-06 58.9 46 58.7
C03p82730 Brassica napus HOM05D004959 ORTHO05D005961 6.5e-06 57.8 46 56.5


User provided reference genes

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