Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G03173 Aquilegia oxysepala HOM05D005312 ORTHO05D006459 2.9e-225 785.0 428 100.0
TAR371G0255 Trochodendron aralioides HOM05D005312 ORTHO05D006459 1.5e-149 533.5 431 68.2
TAR629G1483 Trochodendron aralioides HOM05D005312 ORTHO05D006459 9.7e-149 530.8 398 69.8
Dinv33289 Davidia involucrata HOM05D005312 ORTHO05D006459 6.3e-148 528.1 430 70.0
Nn4g22171 Nelumbo nucifera HOM05D005312 ORTHO05D006459 9.4e-144 514.2 428 64.5
Hma1.2p1_0868F.1_g230570 Hydrangea macrophylla HOM05D005312 ORTHO05D006459 6.1e-143 511.5 430 65.3
CSS0036880 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 3.4e-141 505.8 435 67.8
QL02p069878 Quercus lobata HOM05D005312 ORTHO05D006459 1.1e-139 500.7 395 68.9
Peaxi162Scf00420g00087 Petunia axillaris HOM05D005312 ORTHO05D006459 1.8e-139 500.0 388 64.9
Cfa007172 Carpinus fangiana HOM05D005312 ORTHO05D006459 3.1e-139 499.2 400 68.2
Ciclev10015374m.g Citrus clementina HOM05D005312 ORTHO05D006459 3.1e-139 499.2 432 66.2
Thecc.04G046000 Theobroma cacao HOM05D005312 ORTHO05D006459 4.1e-139 498.8 395 65.8
PSO478G3188 Papaver somniferum HOM05D005312 ORTHO05D006459 7.0e-139 498.0 394 69.0
PSO017G1316 Papaver somniferum HOM05D005312 ORTHO05D006459 1.6e-138 496.9 401 68.1
Actinidia37728 Actinidia chinensis HOM05D005312 ORTHO05D006459 4.5e-138 495.4 429 65.7
CANSAT64G1152 Cannabis sativa HOM05D005312 ORTHO05D006459 5.9e-138 495.0 398 65.1
PGSC0003DMG400020194 Solanum tuberosum HOM05D005312 ORTHO05D006459 1.0e-137 494.2 430 61.2
COL.COLO4_13349 Corchorus olitorius HOM05D005312 ORTHO05D006459 1.7e-137 493.4 395 65.8
Rhsim10G0001700 Rhododendron simsii HOM05D005312 ORTHO05D006459 3.8e-137 492.3 433 66.7
vmacro22240 Vaccinium macrocarpon HOM05D005312 ORTHO05D006459 3.8e-137 492.3 394 67.8
CAN.G473.156 Capsicum annuum HOM05D005312 ORTHO05D006459 6.6e-137 491.5 389 63.8
Sopen02g039150 Solanum pennellii HOM05D005312 ORTHO05D006459 1.1e-136 490.7 429 60.6
Solyc02g094480.4 Solanum lycopersicum HOM05D000001 ORTHO05D000003 1.5e-136 490.3 428 60.3
Cpa.g.sc70.78 Carica papaya HOM05D005312 ORTHO05D006459 3.3e-136 489.2 431 66.8
MBI07_g40342_MAGBIO Magnolia biondii HOM05D005312 ORTHO05D006459 3.3e-136 489.2 393 65.4
Prupe.3G312600 Prunus persica HOM05D005312 ORTHO05D006459 9.5e-136 487.6 436 64.9
ClCG05G012720 Citrullus lanatus HOM05D005312 ORTHO05D006459 2.1e-135 486.5 431 64.7
MD17G1007700 Malus domestica HOM05D005312 ORTHO05D006459 1.4e-134 483.8 432 63.7
Oeu039797.1 Olea europaea HOM05D005312 ORTHO05D006459 1.4e-134 483.8 433 64.2
Sed0007531 Sechium edule HOM05D005312 ORTHO05D006459 4.0e-134 482.3 429 63.6
Duzib147G0684 Durio zibethinus HOM05D005312 ORTHO05D006459 3.4e-133 479.2 437 64.8
Atru.chr6.2642 Acer truncatum HOM05D005312 ORTHO05D006459 4.4e-133 478.8 435 62.8
Duzib264G0870 Durio zibethinus HOM05D005312 ORTHO05D006459 4.4e-133 478.8 395 64.6
MD09G1004000 Malus domestica HOM05D005312 ORTHO05D006459 5.7e-133 478.4 394 64.2
Glyma.02G066000 Glycine max HOM05D005312 ORTHO05D006459 9.8e-133 477.6 401 63.6
CiPaw.03G003000 Carya illinoinensis HOM05D005312 ORTHO05D006459 1.3e-132 477.2 399 65.9
RcHm_v2.0_Chr2g0176401 Rosa chinensis HOM05D005312 ORTHO05D006459 2.8e-132 476.1 438 63.7
TPR.G36663 Trifolium pratense HOM05D005312 ORTHO05D006459 2.8e-132 476.1 391 65.0
Phvul.004G070300 Phaseolus vulgaris HOM05D005312 ORTHO05D006459 6.3e-132 474.9 433 63.3
MELO3C014806.2 Cucumis melo HOM05D005312 ORTHO05D006459 1.1e-131 474.2 431 63.1
Glyma.16G146900 Glycine max HOM05D005312 ORTHO05D006459 1.6e-130 470.3 432 60.4
Cc07_g01210 Coffea canephora HOM05D005312 ORTHO05D006459 2.0e-130 469.9 392 64.3
Eucgr.G01940 Eucalyptus grandis HOM05D005312 ORTHO05D006459 5.9e-130 468.4 401 62.8
Duzib187G0698 Durio zibethinus HOM05D005312 ORTHO05D006459 5.0e-129 465.3 433 60.7
FvH4_6g54210 Fragaria vesca HOM05D005312 ORTHO05D006459 5.0e-129 465.3 388 63.9
FAN09G1737 Fragaria x ananassa HOM05D005312 ORTHO05D006459 5.0e-129 465.3 388 63.9
Gohir.A07G232100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 5.0e-129 465.3 395 63.0
DCAR_002973 Daucus carota HOM05D005312 ORTHO05D006459 6.6e-129 464.9 454 60.6
Psat1g097480 Pisum sativum HOM05D005312 ORTHO05D006459 1.1e-128 464.2 389 64.3
Lj7A616T62 Lonicera japonica HOM05D005312 ORTHO05D006459 1.5e-128 463.8 435 63.4
Gohir.D07G239300 Gossypium hirsutum HOM05D005312 ORTHO05D006459 1.9e-128 463.4 395 62.3
Gorai.001G275400 Gossypium raimondii HOM05D005312 ORTHO05D006459 1.9e-128 463.4 395 62.3
FAN14G0182 Fragaria x ananassa HOM05D005312 ORTHO05D006459 2.5e-128 463.0 388 63.7
Aa31LG2G5770 Aethionema arabicum HOM05D005312 ORTHO05D006459 5.6e-128 461.8 433 61.2
FAN05G1132 Fragaria x ananassa HOM05D005312 ORTHO05D006459 9.5e-128 461.1 387 63.3
Lj2g0017210 Lotus japonicus HOM05D005312 ORTHO05D006459 9.5e-128 461.1 398 62.1
TWI32G0425 Tripterygium wilfordii HOM05D005312 ORTHO05D006459 2.1e-127 459.9 397 64.7
Lalb_Chr02g0156821 Lupinus albus HOM05D005312 ORTHO05D006459 2.8e-127 459.5 393 62.8
MSTRG.3045 Avicennia marina HOM05D005312 ORTHO05D006459 4.7e-127 458.8 433 60.0
FAN02G3987 Fragaria x ananassa HOM05D005312 ORTHO05D006459 4.7e-127 458.8 387 63.0
SalBow4G2016 Salvia bowleyana HOM05D005312 ORTHO05D006459 8.0e-127 458.0 390 59.7
Ah.02g128920 Amaranthus hybridus HOM05D005312 ORTHO05D006459 1.8e-126 456.8 394 62.9
Nitab4.5_0025697g0010 Nicotiana tabacum HOM05D005312 ORTHO05D006459 1.8e-126 456.8 362 66.3
Medtr6g033275 Medicago truncatula HOM05D005312 ORTHO05D006459 6.8e-126 454.9 387 62.5
Potri.014G145900 Populus trichocarpa HOM05D005312 ORTHO05D006459 1.5e-125 453.8 395 63.0
EL10As7g23753 Beta vulgaris HOM05D005312 ORTHO05D006459 4.4e-125 452.2 438 61.2
Manes.11G077500 Manihot esculenta HOM05D005312 ORTHO05D006459 4.4e-125 452.2 389 64.8
THA.LOC104805304 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 1.3e-124 450.7 398 63.6
THA.LOC104823996 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 1.3e-124 450.7 403 62.5
Sabra14G0109800 Salix brachista HOM05D005312 ORTHO05D006459 2.9e-124 449.5 395 62.0
Manes.04G092300 Manihot esculenta HOM05D005312 ORTHO05D006459 5.4e-123 445.3 393 62.8
Potri.002G236600 Populus trichocarpa HOM05D005312 ORTHO05D006459 5.4e-123 445.3 392 61.0
Sc03g0004830 Simmondsia chinensis HOM05D005312 ORTHO05D006459 5.4e-123 445.3 431 63.3
Migut.F00017 Erythranthe guttata HOM05D005312 ORTHO05D006459 7.0e-123 444.9 398 58.8
Lalb_Chr06g0173771 Lupinus albus HOM05D005312 ORTHO05D006459 7.0e-123 444.9 391 61.1
CSS0020784 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 3.5e-122 442.6 410 64.6
Sabra02G0180200 Salix brachista HOM05D005312 ORTHO05D006459 6.0e-122 441.8 400 60.8
arahy.Tifrunner.gnm1.ann1.ZY683S Arachis hypogaea HOM05D005312 ORTHO05D006459 3.0e-121 439.5 407 58.5
Carub.0005s0483 Capsella rubella HOM05D005312 ORTHO05D006459 1.9e-120 436.8 394 59.9
arahy.Tifrunner.gnm1.ann1.JN3C7K Arachis hypogaea HOM05D005312 ORTHO05D006459 2.5e-120 436.4 411 59.1
BraA02t08484Z Brassica rapa HOM05D005312 ORTHO05D006459 5.6e-120 435.3 431 60.1
Thhalv10004350m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 7.3e-120 434.9 430 61.6
Sp2g15910 Schrenkiella parvula HOM05D005312 ORTHO05D006459 7.3e-120 434.9 428 63.1
Aa31LG1G1910 Aethionema arabicum HOM05D005312 ORTHO05D006459 1.2e-119 434.1 433 59.8
AT3G26780 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 1.2e-119 434.1 428 59.3
C02p53340 Brassica napus HOM05D005312 ORTHO05D006459 1.2e-119 434.1 428 60.0
A02p34780 Brassica napus HOM05D005312 ORTHO05D006459 1.6e-119 433.7 430 59.8
BcaC03g17388 Brassica carinata HOM05D005312 ORTHO05D006459 2.8e-119 433.0 428 59.8
BolC2t11405H Brassica oleracea HOM05D005312 ORTHO05D006459 2.8e-119 433.0 428 59.8
BcaB07g30210 Brassica carinata HOM05D005312 ORTHO05D006459 1.8e-118 430.3 395 61.0
AL5G15650 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 6.8e-118 428.3 428 58.4
Oeu003422.1 Olea europaea HOM05D005312 ORTHO05D006459 3.4e-117 426.0 443 57.1
AT1G12850 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 7.5e-117 424.9 438 58.9
Carub.0001s1260 Capsella rubella HOM05D005312 ORTHO05D006459 1.3e-116 424.1 430 56.5
AUR62041074 Chenopodium quinoa HOM05D005312 ORTHO05D006459 1.7e-116 423.7 396 58.8
PGR083G1093 Punica granatum HOM05D005312 ORTHO05D006459 2.2e-116 423.3 392 59.7
CARHR013180 Cardamine hirsuta HOM05D005312 ORTHO05D006459 6.4e-116 421.8 435 57.2
AL1G24500 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 1.4e-115 420.6 434 57.8
Nitab4.5_0002172g0150 Nicotiana tabacum HOM05D005312 ORTHO05D006459 6.0e-114 415.2 397 57.9
HanXRQChr14g0451381 Helianthus annuus HOM05D005312 ORTHO05D006459 7.8e-114 414.8 385 57.4
Lsat_1_v5_gn_2_94460 Lactuca sativa HOM05D005312 ORTHO05D006459 1.3e-113 414.1 388 58.2
Sp1g11430 Schrenkiella parvula HOM05D005312 ORTHO05D006459 1.7e-113 413.7 434 57.4
Thhalv10007881m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 3.0e-113 412.9 431 58.0
SGA_v2.0_scaffold44G16946 Striga asiatica HOM05D005312 ORTHO05D006459 3.3e-112 409.5 399 57.1
CARHR147850 Cardamine hirsuta HOM05D005312 ORTHO05D006459 1.6e-111 407.1 433 57.7
CDE06G1073 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 6.8e-110 401.7 430 57.0
CDE02G3855 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 2.6e-109 399.8 403 55.6
A08p32570 Brassica napus HOM05D005312 ORTHO05D006459 4.4e-109 399.1 430 57.4
ATR0582G189 Amborella trichopoda HOM05D005312 ORTHO05D006459 4.9e-108 395.6 456 51.8
Zm00001eb170350 Zea mays HOM05D005312 ORTHO05D006459 1.4e-107 394.0 387 57.1
BcaB03g13161 Brassica carinata HOM05D005312 ORTHO05D006459 1.9e-107 393.7 437 57.2
BraA08t35181Z Brassica rapa HOM05D005312 ORTHO05D006459 1.9e-107 393.7 430 56.3
BolC8t49199H Brassica oleracea HOM05D005312 ORTHO05D006459 3.2e-107 392.9 435 56.6
C08p15720 Brassica napus HOM05D005312 ORTHO05D006459 1.2e-106 391.0 399 55.9
Gohir.D10G081000 Gossypium hirsutum HOM05D005312 ORTHO05D006459 3.0e-105 386.3 397 52.1
Gorai.011G088100 Gossypium raimondii HOM05D005312 ORTHO05D006459 5.1e-105 385.6 397 52.1
Os11g0522000 Oryza sativa ssp. japonica HOM05D005312 ORTHO05D006459 5.1e-105 385.6 388 56.2
Gohir.A10G070100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 1.5e-104 384.0 396 52.0
AUR62037835 Chenopodium quinoa HOM05D005312 ORTHO05D006459 2.7e-98 363.2 314 60.5
GSVIVG01033003001 Vitis vinifera HOM05D005312 ORTHO05D006459 4.6e-98 362.5 311 62.4
SEGI_01379 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 3.3e-96 356.3 395 50.9
ECA238G3491 Erigeron canadensis HOM05D000001 ORTHO05D000003 1.9e-83 313.9 309 56.0
Ca_26608_v3 Cicer arietinum L. HOM05D005312 ORTHO05D006459 7.4e-80 302.0 428 44.4
VMungo0464G0174 Vigna mungo HOM05D005312 ORTHO05D006459 8.2e-71 271.9 241 60.6
HPP92_008243 Vanilla planifolia HOM05D005312 ORTHO05D006459 1.7e-68 264.2 241 62.2
SEGI_20575 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 6.1e-66 255.8 305 46.6
Pp3c21_20660 Physcomitrium patens HOM05D005312 ORTHO05D006459 2.4e-62 243.8 394 37.8
Nn3g16305 Nelumbo nucifera HOM05D005312 ORTHO05D006459 9.0e-62 241.9 204 62.3
ECA246G2144 Erigeron canadensis HOM05D005312 ORTHO05D006459 4.2e-59 233.0 234 52.1
Actinidia19557 Actinidia chinensis HOM05D005312 ORTHO05D006459 5.7e-56 222.6 170 66.5
unitig_37.g12041 Utricularia gibba HOM05D005312 ORTHO05D006459 3.7e-55 219.9 225 51.1
CSS0007293 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 5.5e-51 206.1 194 69.6
VMungo0464G1790 Vigna mungo HOM05D005312 ORTHO05D006459 3.6e-50 203.4 199 65.8
Haze_14938 Corylus avellana HOM05D005312 ORTHO05D006459 1.7e-47 194.5 163 68.1
CBR_g2835 Chara braunii HOM05D005312 ORTHO05D006459 2.6e-45 187.2 356 34.8
unitig_37.g12040 Utricularia gibba HOM05D005312 ORTHO05D006459 1.9e-43 181.0 149 63.1
AagrBONN_evm.TU.Sc2ySwM_344.1953 Anthoceros agrestis HOM05D005312 ORTHO05D006459 7.4e-40 169.1 313 35.8
SGA_v2.0_scaffold173G39196 Striga asiatica HOM05D005312 ORTHO05D006459 4.4e-16 90.1 114 48.2
SEGI_29311 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 2.4e-14 84.3 76 57.9
CARHR120940 Cardamine hirsuta HOM05D005312 ORTHO05D006459 2.8e-10 70.9 74 54.1
PRCOL_00002808 Prasinoderma coloniale HOM05D005312 ORTHO05D006459 1.4e-09 68.6 334 24.6
Pp3c8_13210 Physcomitrium patens HOM05D003180 ORTHO05D003664 4.9e-07 60.1 146 32.9


User provided reference genes

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