Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G03063 Aquilegia oxysepala HOM05D007503 ORTHO05D009487 4.4e-59 231.1 117 100.0
QL02p056384 Quercus lobata HOM05D007503 ORTHO05D009487 1.2e-19 100.1 65 81.5
MD17G1272500 Malus domestica HOM05D007503 ORTHO05D009487 3.4e-19 98.6 67 76.1
Hund06856 Selenicereus undatus HOM05D007503 ORTHO05D009487 9.8e-19 97.1 60 78.3
TWI56G0335 Tripterygium wilfordii HOM05D007503 ORTHO05D009487 2.9e-18 95.5 62 77.4
FAN26G0784 Fragaria x ananassa HOM05D000757 ORTHO05D000622 3.7e-18 95.1 68 73.5
GSVIVG01010020001 Vitis vinifera HOM05D007503 ORTHO05D009487 4.9e-18 94.7 59 78.0
Actinidia06811 Actinidia chinensis HOM05D007503 ORTHO05D009487 6.4e-18 94.4 65 75.4
Prupe.3G011500 Prunus persica HOM05D007503 ORTHO05D009487 8.3e-18 94.0 65 73.8
Nn1g09784 Nelumbo nucifera HOM05D007503 ORTHO05D009487 2.4e-17 92.4 65 73.8
Rhsim01G0105600 Rhododendron simsii HOM05D007503 ORTHO05D009487 2.4e-17 92.4 63 73.0
CANSAT80G2883 Cannabis sativa HOM05D007503 ORTHO05D009487 5.4e-17 91.3 60 75.0
FvH4_1g27230 Fragaria vesca HOM05D007503 ORTHO05D009487 9.2e-17 90.5 66 72.7
FAN19G2707 Fragaria x ananassa HOM05D007503 ORTHO05D009487 9.2e-17 90.5 66 72.7
FAN23G0073 Fragaria x ananassa HOM05D007503 ORTHO05D009487 9.2e-17 90.5 66 72.7
vmacro20740 Vaccinium macrocarpon HOM05D007503 ORTHO05D009487 1.2e-16 90.1 63 71.4
Phvul.006G084000 Phaseolus vulgaris HOM05D007503 ORTHO05D009487 2.1e-16 89.4 64 75.0
DCAR_007994 Daucus carota HOM05D007503 ORTHO05D009487 2.7e-16 89.0 60 75.0
HanXRQChr02g0039651 Helianthus annuus HOM05D007503 ORTHO05D009487 2.7e-16 89.0 66 71.2
MD09G1282700 Malus domestica HOM05D007503 ORTHO05D009487 2.7e-16 89.0 64 70.3
Haze_14049 Corylus avellana HOM05D007503 ORTHO05D009487 3.5e-16 88.6 58 74.1
Haze_14060 Corylus avellana HOM05D007503 ORTHO05D009487 3.5e-16 88.6 58 74.1
DCAR_023852 Daucus carota HOM05D007503 ORTHO05D009487 3.5e-16 88.6 66 69.7
Hma1.2p1_0123F.1_g057900 Hydrangea macrophylla HOM05D007503 ORTHO05D009487 3.5e-16 88.6 58 75.9
Sc09g0004610 Simmondsia chinensis HOM05D007503 ORTHO05D009487 6.0e-16 87.8 62 71.0
RcHm_v2.0_Chr3g0487701 Rosa chinensis HOM05D007503 ORTHO05D009487 7.8e-16 87.4 64 71.9
Cc09_g03530 Coffea canephora HOM05D007503 ORTHO05D009487 1.0e-15 87.0 67 68.7
Manes.01G240301 Manihot esculenta HOM05D007503 ORTHO05D009487 1.0e-15 87.0 62 69.4
Ciclev10013261m.g Citrus clementina HOM05D007503 ORTHO05D009487 1.3e-15 86.7 62 67.7
Dinv06977 Davidia involucrata HOM05D007503 ORTHO05D009487 1.3e-15 86.7 62 72.6
Eucgr.I00239 Eucalyptus grandis HOM05D007503 ORTHO05D009487 1.3e-15 86.7 70 65.7
Glyma.18G047300 Glycine max HOM05D007503 ORTHO05D009487 1.3e-15 86.7 64 71.9
Potri.014G105250 Populus trichocarpa HOM05D007503 ORTHO05D009487 1.3e-15 86.7 61 70.5
Glyma.11G203700 Glycine max HOM05D007503 ORTHO05D009487 1.7e-15 86.3 64 71.9
Thecc.09G340100 Theobroma cacao HOM05D007503 ORTHO05D009487 1.7e-15 86.3 69 66.7
CiPaw.03G009100 Carya illinoinensis HOM05D007503 ORTHO05D009487 2.3e-15 85.9 55 74.5
Lj6g0027028 Lotus japonicus HOM05D007503 ORTHO05D009487 2.3e-15 85.9 64 71.9
Medtr3g063970 Medicago truncatula HOM05D007503 ORTHO05D009487 3.0e-15 85.5 72 63.9
Lalb_Chr20g0117211 Lupinus albus HOM05D007503 ORTHO05D009487 3.9e-15 85.1 64 71.9
COL.COLO4_13441 Corchorus olitorius HOM05D007503 ORTHO05D009487 6.6e-15 84.3 69 65.2
unitig_0.g938 Utricularia gibba HOM05D001953 ORTHO05D001904 1.5e-14 83.2 87 56.3
Duzib211G0566 Durio zibethinus HOM05D007503 ORTHO05D009487 2.5e-14 82.4 63 66.7
Gohir.A11G170200 Gossypium hirsutum HOM05D007503 ORTHO05D009487 3.3e-14 82.0 69 62.3
Gohir.D11G177200 Gossypium hirsutum HOM05D007503 ORTHO05D009487 3.3e-14 82.0 69 62.3
Gorai.007G189300 Gossypium raimondii HOM05D007503 ORTHO05D009487 3.3e-14 82.0 69 62.3
PGR119G1426 Punica granatum HOM05D007503 ORTHO05D009487 3.3e-14 82.0 64 67.2
Migut.F01879 Erythranthe guttata HOM05D007503 ORTHO05D009487 4.3e-14 81.6 52 76.9
Nitab4.5_0002233g0020 Nicotiana tabacum HOM05D007503 ORTHO05D009487 7.3e-14 80.9 69 60.9
BraA01t03971Z Brassica rapa HOM05D007503 ORTHO05D009487 1.2e-13 80.1 66 62.1
PSO729G0165 Papaver somniferum HOM05D007503 ORTHO05D009487 1.2e-13 80.1 65 67.7
ECA232G1405 Erigeron canadensis HOM05D007503 ORTHO05D009487 1.6e-13 79.7 63 63.5
SalBow6G4878 Salvia bowleyana HOM05D007503 ORTHO05D009487 1.6e-13 79.7 63 66.7
A01p39280 Brassica napus HOM05D007503 ORTHO05D009487 2.1e-13 79.3 66 62.1
Nitab4.5_0001653g0060 Nicotiana tabacum HOM05D007503 ORTHO05D009487 2.1e-13 79.3 52 75.0
Nitab4.5_0011656g0020 Nicotiana tabacum HOM05D007503 ORTHO05D009487 2.1e-13 79.3 52 73.1
Solyc03g058340.3 Solanum lycopersicum HOM05D007503 ORTHO05D009487 2.1e-13 79.3 66 62.1
Sopen03g015570 Solanum pennellii HOM05D007503 ORTHO05D009487 2.1e-13 79.3 66 62.1
THA.LOC104815587 Tarenaya hassleriana HOM05D007503 ORTHO05D009487 2.1e-13 79.3 66 65.2
THA.LOC104822606 Tarenaya hassleriana HOM05D007503 ORTHO05D009487 2.1e-13 79.3 66 63.6
C01p50080 Brassica napus HOM05D007503 ORTHO05D009487 3.6e-13 78.6 66 60.6
BolC1t04962H Brassica oleracea HOM05D007503 ORTHO05D009487 3.6e-13 78.6 66 60.6
CDE05G2177 Ceratophyllum demersum HOM05D007503 ORTHO05D009487 3.6e-13 78.6 59 64.4
CAN.G326.18 Capsicum annuum HOM05D007503 ORTHO05D009487 6.2e-13 77.8 66 63.6
Sabra14G0077600 Salix brachista HOM05D007503 ORTHO05D009487 6.2e-13 77.8 60 65.0
Sed0018329 Sechium edule HOM05D007503 ORTHO05D009487 6.2e-13 77.8 65 61.5
BcaC09g48410 Brassica carinata HOM05D007503 ORTHO05D009487 8.1e-13 77.4 66 59.1
AL3G26810 Arabidopsis lyrata HOM05D007503 ORTHO05D009487 1.1e-12 77.0 66 60.6
BcaB06g25385 Brassica carinata HOM05D007503 ORTHO05D009487 1.1e-12 77.0 68 58.8
CARHR089340 Cardamine hirsuta HOM05D007503 ORTHO05D009487 1.1e-12 77.0 58 62.1
AT3G14430 Arabidopsis thaliana HOM05D007503 ORTHO05D009487 1.4e-12 76.6 66 60.6
A05p34950 Brassica napus HOM05D007503 ORTHO05D009487 1.4e-12 76.6 65 61.5
C05p52900 Brassica napus HOM05D007503 ORTHO05D009487 1.4e-12 76.6 65 61.5
BolC5t33967H Brassica oleracea HOM05D007503 ORTHO05D009487 1.4e-12 76.6 65 61.5
BraA05t22309Z Brassica rapa HOM05D007503 ORTHO05D009487 1.4e-12 76.6 65 61.5
Peaxi162Scf00253g00725 Petunia axillaris HOM05D007503 ORTHO05D009487 1.4e-12 76.6 65 63.1
Carub.0003s1415 Capsella rubella HOM05D007503 ORTHO05D009487 1.8e-12 76.3 66 59.1
BcaC05g29084 Brassica carinata HOM05D007503 ORTHO05D009487 2.3e-12 75.9 65 61.5
Sp3g12730 Schrenkiella parvula HOM05D007503 ORTHO05D009487 3.1e-12 75.5 80 52.5
ClCG01G008330 Citrullus lanatus HOM05D007503 ORTHO05D009487 4.0e-12 75.1 65 60.0
Zm00001eb036330 Zea mays HOM05D007503 ORTHO05D009487 4.0e-12 75.1 66 59.1
Os08g0528601 Oryza sativa ssp. japonica HOM05D007503 ORTHO05D009487 6.8e-12 74.3 65 63.1
TAR392G0002 Trochodendron aralioides HOM05D007503 ORTHO05D009487 6.8e-12 74.3 50 84.0
Thhalv10021919m.g Eutrema salsugineum HOM05D007503 ORTHO05D009487 8.9e-12 73.9 72 55.6
MELO3C025073.2 Cucumis melo HOM05D007503 ORTHO05D009487 1.2e-11 73.6 65 56.9
CsaV3_5G020250 Cucumis sativus L. HOM05D007503 ORTHO05D009487 4.4e-11 71.6 58 58.6
Zm00001eb175060 Zea mays HOM05D007503 ORTHO05D009487 5.8e-11 71.2 68 54.4
Aa31LG8G1690 Aethionema arabicum HOM05D007503 ORTHO05D009487 7.5e-11 70.9 66 56.1
Pp3c11_25150 Physcomitrium patens HOM05D007503 ORTHO05D009487 9.9e-11 70.5 50 68.0
Sabra02G0134700 Salix brachista HOM05D007503 ORTHO05D009487 3.7e-10 68.6 64 54.7
Aa31LG10G1620 Aethionema arabicum HOM05D007503 ORTHO05D009487 5.4e-09 64.7 65 50.8
CSS0042421 Camellia sinensis var. sinensis HOM05D007503 ORTHO05D009487 5.4e-09 64.7 49 69.4
Pp3c7_7140 Physcomitrium patens HOM05D007503 ORTHO05D009487 3.5e-08 62.0 50 62.0
arahy.Tifrunner.gnm1.ann1.17W1X2 Arachis hypogaea HOM05D007503 ORTHO05D009487 4.6e-08 61.6 68 51.5
arahy.Tifrunner.gnm1.ann1.CKCH2H Arachis hypogaea HOM05D007503 ORTHO05D009487 1.7e-07 59.7 49 67.3
Lsat_1_v5_gn_9_48861 Lactuca sativa HOM05D007503 ORTHO05D009487 1.7e-07 59.7 53 62.3
Cpa.g.c46349 Carica papaya HOM05D007503 ORTHO05D009487 3.0e-07 58.9 71 50.7
Cpa.g.sc44.91 Carica papaya HOM05D007503 ORTHO05D009487 3.0e-07 58.9 71 50.7
TPR.G29629 Trifolium pratense HOM05D007503 ORTHO05D009487 8.6e-07 57.4 49 67.3
HPP92_021450 Vanilla planifolia HOM05D007503 ORTHO05D009487 8.6e-07 57.4 48 68.8
HanXRQChr14g0445891 Helianthus annuus HOM05D007503 ORTHO05D009487 1.5e-06 56.6 51 62.7
Mapoly0109s0063 Marchantia polymorpha HOM05D007503 ORTHO05D009487 2.5e-06 55.8 40 72.5
PGSC0003DMG400000976 Solanum tuberosum HOM05D007503 ORTHO05D009487 9.5e-06 53.9 52 57.7


User provided reference genes

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