Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G03055 Aquilegia oxysepala HOM05D005483 ORTHO05D006924 0.0e+00 2129.8 1118 100.0
TAR622G1101 Trochodendron aralioides HOM05D005483 ORTHO05D006924 0.0e+00 1736.5 1131 78.4
GSVIVG01001111001 Vitis vinifera HOM05D005483 ORTHO05D006924 0.0e+00 1706.8 1126 77.6
PSO017G1761 Papaver somniferum HOM05D005483 ORTHO05D006924 0.0e+00 1698.7 1126 77.0
PSO478G1749 Papaver somniferum HOM05D005483 ORTHO05D006924 0.0e+00 1688.7 1126 76.6
Nn4g22102 Nelumbo nucifera HOM05D005483 ORTHO05D006924 0.0e+00 1679.5 1127 77.2
Thecc.02G190700 Theobroma cacao HOM05D005483 ORTHO05D006924 0.0e+00 1662.1 1133 75.5
Dinv17529 Davidia involucrata HOM05D005483 ORTHO05D006924 0.0e+00 1660.2 1144 74.9
Manes.08G100200 Manihot esculenta HOM05D005483 ORTHO05D006924 0.0e+00 1656.3 1128 74.5
Nn3g16247 Nelumbo nucifera HOM05D005483 ORTHO05D006924 0.0e+00 1653.6 1135 75.4
CANSAT01G1825 Cannabis sativa HOM05D005483 ORTHO05D006924 0.0e+00 1642.1 1131 73.7
Hma1.2p1_1494F.1_g286890 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 0.0e+00 1640.2 1129 74.2
CSS0020507 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 0.0e+00 1637.1 1154 73.7
Gorai.002G021000 Gossypium raimondii HOM05D005483 ORTHO05D006924 0.0e+00 1637.1 1142 72.9
Gohir.A01G020200 Gossypium hirsutum HOM05D005483 ORTHO05D006924 0.0e+00 1635.5 1143 72.6
Duzib052G0599 Durio zibethinus HOM05D005483 ORTHO05D006924 0.0e+00 1635.2 1130 74.2
Gohir.D01G018800 Gossypium hirsutum HOM05D005483 ORTHO05D006924 0.0e+00 1634.8 1140 73.8
Actinidia30577 Actinidia chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1634.0 1140 73.9
PGR119G2201 Punica granatum HOM05D005483 ORTHO05D006924 0.0e+00 1632.5 1138 74.2
Sopen11g017110 Solanum pennellii HOM05D005483 ORTHO05D006924 0.0e+00 1628.6 1130 72.9
Ciclev10004203m.g Citrus clementina HOM05D005483 ORTHO05D006924 0.0e+00 1628.2 1130 74.4
Solyc11g033282.1 Solanum lycopersicum HOM05D005483 ORTHO05D006924 0.0e+00 1626.3 1130 72.9
Cpa.g.sc38.68 Carica papaya HOM05D005483 ORTHO05D006924 0.0e+00 1623.6 1138 73.2
RcHm_v2.0_Chr4g0428701 Rosa chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1621.3 1129 73.0
Cc11_g14910 Coffea canephora HOM05D005483 ORTHO05D006924 0.0e+00 1611.3 1136 72.3
Prupe.1G213300 Prunus persica HOM05D005483 ORTHO05D006924 0.0e+00 1610.1 1126 72.6
FvH4_4g22440 Fragaria vesca HOM05D005483 ORTHO05D006924 0.0e+00 1609.7 1126 71.8
FAN07G1779 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1609.3 1126 71.8
TWI18G1022 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 0.0e+00 1608.2 1132 72.3
Haze_12514 Corylus avellana HOM05D005483 ORTHO05D006924 0.0e+00 1607.4 1140 72.9
QL03p048748 Quercus lobata HOM05D005483 ORTHO05D006924 0.0e+00 1607.4 1141 72.7
Duzib248G1306 Durio zibethinus HOM05D005483 ORTHO05D006924 0.0e+00 1607.0 1140 72.9
Peaxi162Scf00842g00430 Petunia axillaris HOM05D005483 ORTHO05D006924 0.0e+00 1605.1 1133 72.2
FAN12G1583 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1604.0 1126 71.5
MD16G1142500 Malus domestica HOM05D005483 ORTHO05D006924 0.0e+00 1602.8 1124 72.4
MELO3C017824.2 Cucumis melo HOM05D005483 ORTHO05D006924 0.0e+00 1602.0 1144 72.5
Cfa009459 Carpinus fangiana HOM05D005483 ORTHO05D006924 0.0e+00 1601.6 1140 72.9
FAN17G2071 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1600.9 1126 71.0
CsaV3_4G002140 Cucumis sativus L. HOM05D005483 ORTHO05D006924 0.0e+00 1593.2 1143 72.0
Sed0020947 Sechium edule HOM05D005483 ORTHO05D006924 0.0e+00 1590.5 1141 71.6
Rhsim12G0016200 Rhododendron simsii HOM05D005483 ORTHO05D006924 0.0e+00 1586.2 1137 72.4
MSTRG.445 Avicennia marina HOM05D005483 ORTHO05D006924 0.0e+00 1583.9 1133 69.9
Potri.003G161400 Populus trichocarpa HOM05D005483 ORTHO05D006924 0.0e+00 1578.1 1130 71.0
AUR62028835 Chenopodium quinoa HOM05D005483 ORTHO05D006924 0.0e+00 1575.8 1129 72.3
Sc11g0000050 Simmondsia chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1574.7 1138 70.9
HanXRQChr17g0540341 Helianthus annuus HOM05D005483 ORTHO05D006924 0.0e+00 1573.9 1144 70.7
vmacro01010 Vaccinium macrocarpon HOM05D005483 ORTHO05D006924 0.0e+00 1573.5 1144 71.4
Migut.K01044 Erythranthe guttata HOM05D005483 ORTHO05D006924 0.0e+00 1573.1 1148 70.0
TWI36G1286 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 0.0e+00 1571.2 1141 71.2
CiPaw.06G110300 Carya illinoinensis HOM05D005483 ORTHO05D006924 0.0e+00 1570.1 1137 72.1
Sabra03G0117300 Salix brachista HOM05D005483 ORTHO05D006924 0.0e+00 1568.1 1186 68.5
Potri.001G068900 Populus trichocarpa HOM05D005483 ORTHO05D006924 0.0e+00 1567.7 1131 71.3
SalBow2G2141 Salvia bowleyana HOM05D005483 ORTHO05D006924 0.0e+00 1564.7 1150 70.2
Lsat_1_v5_gn_3_32540 Lactuca sativa HOM05D005483 ORTHO05D006924 0.0e+00 1563.1 1137 71.3
MSTRG.8060 Avicennia marina HOM05D005483 ORTHO05D006924 0.0e+00 1562.4 1074 72.5
ClCG07G012020 Citrullus lanatus HOM05D005483 ORTHO05D006924 0.0e+00 1556.2 1114 71.7
ECA246G4063 Erigeron canadensis HOM05D005483 ORTHO05D006924 0.0e+00 1543.5 1129 69.8
EL10Ac2g02397 Beta vulgaris HOM05D005483 ORTHO05D006924 0.0e+00 1527.7 1063 72.2
HanXRQChr06g0175451 Helianthus annuus HOM05D005483 ORTHO05D006924 0.0e+00 1527.7 1129 69.0
Sed0017746 Sechium edule HOM05D005483 ORTHO05D006924 0.0e+00 1523.5 1134 69.7
MD13G1132200 Malus domestica HOM05D005483 ORTHO05D006924 0.0e+00 1522.3 1124 69.1
SGA_v2.0_scaffold258G45771 Striga asiatica HOM05D005483 ORTHO05D006924 0.0e+00 1522.3 1138 68.6
Ah.03g135500 Amaranthus hybridus HOM05D005483 ORTHO05D006924 0.0e+00 1519.6 1097 71.4
Glyma.08G363300 Glycine max HOM05D005483 ORTHO05D006924 0.0e+00 1509.6 1116 68.2
THA.LOC104825454 Tarenaya hassleriana HOM05D005483 ORTHO05D006924 0.0e+00 1504.6 1134 67.4
Phvul.008G003900 Phaseolus vulgaris HOM05D005483 ORTHO05D006924 0.0e+00 1504.2 1067 70.7
Lj1g0002578 Lotus japonicus HOM05D005483 ORTHO05D006924 0.0e+00 1496.9 1129 68.0
Glyma.18G298700 Glycine max HOM05D005483 ORTHO05D006924 0.0e+00 1491.9 1126 67.7
arahy.Tifrunner.gnm1.ann1.H63XD7 Arachis hypogaea HOM05D005483 ORTHO05D006924 0.0e+00 1488.4 1073 70.4
arahy.Tifrunner.gnm1.ann1.N4LA1V Arachis hypogaea HOM05D005483 ORTHO05D006924 0.0e+00 1488.4 1073 70.4
Aa31LG3G14260 Aethionema arabicum HOM05D005483 ORTHO05D006924 0.0e+00 1486.9 1139 66.5
Sabra01G0048200 Salix brachista HOM05D005483 ORTHO05D006924 0.0e+00 1484.5 1027 73.2
TPR.G9702 Trifolium pratense HOM05D005483 ORTHO05D006924 0.0e+00 1484.5 1067 70.0
Lalb_Chr10g0091131 Lupinus albus HOM05D005483 ORTHO05D006924 0.0e+00 1484.2 1130 68.9
AL6G24010 Arabidopsis lyrata HOM05D005483 ORTHO05D006924 0.0e+00 1477.2 1137 66.1
AT5G13390 Arabidopsis thaliana HOM05D005483 ORTHO05D006924 0.0e+00 1475.3 1137 65.8
BcaNung01159 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1466.8 1136 65.9
Thhalv10012499m.g Eutrema salsugineum HOM05D005483 ORTHO05D006924 0.0e+00 1466.8 1141 65.6
Sp6g30630 Schrenkiella parvula HOM05D005483 ORTHO05D006924 0.0e+00 1463.7 1141 65.6
CARHR200040 Cardamine hirsuta HOM05D005483 ORTHO05D006924 0.0e+00 1462.2 1126 66.4
Carub.0006s1155 Capsella rubella HOM05D005483 ORTHO05D006924 0.0e+00 1458.7 1139 65.6
A10p24830 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1457.6 1132 65.6
BraA10t44547Z Brassica rapa HOM05D005483 ORTHO05D006924 0.0e+00 1457.2 1132 65.6
BolC9t59209H Brassica oleracea HOM05D005483 ORTHO05D006924 0.0e+00 1455.7 1132 65.7
BolC2t06551H Brassica oleracea HOM05D005483 ORTHO05D006924 0.0e+00 1452.6 1127 65.1
COL.COLO4_08434 Corchorus olitorius HOM05D005483 ORTHO05D006924 0.0e+00 1451.8 1015 74.2
C09p63680 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1449.5 1132 65.6
BraA02t05161Z Brassica rapa HOM05D005483 ORTHO05D006924 0.0e+00 1443.3 1137 64.7
BcaNung01880 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1441.4 1071 67.2
C02p06100 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1437.6 1068 67.0
A02p01880 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1437.2 1138 64.6
Ca_04087_v3 Cicer arietinum L. HOM05D005483 ORTHO05D006924 0.0e+00 1436.4 1067 68.2
Psat3g206760 Pisum sativum HOM05D005483 ORTHO05D006924 0.0e+00 1429.1 1032 69.0
VMungo1383G1684 Vigna mungo HOM05D005483 ORTHO05D006924 0.0e+00 1426.4 1006 70.8
AUR62005722 Chenopodium quinoa HOM05D005483 ORTHO05D006924 0.0e+00 1422.5 1127 66.5
MBI11_g02503_MAGBIO Magnolia biondii HOM05D005483 ORTHO05D006924 0.0e+00 1403.3 1039 70.3
Eucgr.G01983 Eucalyptus grandis HOM05D005483 ORTHO05D006924 0.0e+00 1389.8 921 75.8
HPP92_020112 Vanilla planifolia HOM05D005483 ORTHO05D006924 0.0e+00 1378.2 1116 62.6
Lj6C839G6 Lonicera japonica HOM05D005483 ORTHO05D006924 0.0e+00 1368.6 922 75.2
ATR0582G070 Amborella trichopoda HOM05D005483 ORTHO05D006924 0.0e+00 1360.1 1071 64.5
Medtr7g006760 Medicago truncatula HOM05D005483 ORTHO05D006924 0.0e+00 1356.3 1068 65.2
TAR374G0614 Trochodendron aralioides HOM05D005483 ORTHO05D006924 0.0e+00 1338.9 918 74.9
SEGI_17725 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 0.0e+00 1325.5 1092 61.7
BcaC04g19119 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1317.0 1150 60.1
Medtr7g406760 Medicago truncatula HOM05D005483 ORTHO05D006924 0.0e+00 1245.3 887 70.1
CDE05G0204 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 0.0e+00 1193.3 940 66.8
Atru.chr12.1443 Acer truncatum HOM05D005483 ORTHO05D006924 0.0e+00 1169.8 824 74.2
Pp3c14_23090 Physcomitrium patens HOM05D005483 ORTHO05D006924 0.0e+00 1108.2 1072 53.2
Mapoly0029s0137 Marchantia polymorpha HOM05D005483 ORTHO05D006924 0.0e+00 1096.3 1077 51.7
CSS0027672 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 0.0e+00 1087.4 795 70.8
AagrBONN_evm.TU.Sc2ySwM_228.3500 Anthoceros agrestis HOM05D005483 ORTHO05D006924 1.3e-301 1040.0 1071 49.4
SMO116G0229 Selaginella moellendorffii HOM05D005483 ORTHO05D006924 1.6e-296 1023.1 1061 50.2
DCAR_026441 Daucus carota HOM05D005483 ORTHO05D006924 1.7e-285 986.5 669 73.5
unitig_22.g6373 Utricularia gibba HOM05D005483 ORTHO05D006924 3.9e-282 975.3 760 63.9
CDE05G1761 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 1.7e-253 880.2 928 55.0
Nitab4.5_0002569g0090 Nicotiana tabacum HOM05D005483 ORTHO05D006924 3.1e-239 832.8 612 70.3
CBR_g38877 Chara braunii HOM05D005483 ORTHO05D006924 7.5e-225 785.0 1098 41.6
Zm00001eb113290 Zea mays HOM05D005483 ORTHO05D006924 2.0e-214 750.4 610 62.0
RcHm_v2.0_Chr4g0402251 Rosa chinensis HOM05D005483 ORTHO05D006924 8.2e-155 552.4 365 72.3
Hma1.2p1_1494F.1_g286880 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 5.7e-148 529.6 434 67.3
DCAR_026440 Daucus carota HOM05D005483 ORTHO05D006924 6.3e-139 499.6 448 61.2
Os11g0528200 Oryza sativa ssp. japonica HOM05D005483 ORTHO05D006924 6.3e-123 446.4 353 64.3
Cre01.g018050 Chlamydomonas reinhardtii HOM05D005483 ORTHO05D006924 2.8e-94 351.3 1189 27.7
unitig_22.g6372 Utricularia gibba HOM05D005483 ORTHO05D006924 2.3e-93 348.2 317 61.8
Actinidia22109 Actinidia chinensis HOM05D005483 ORTHO05D006924 2.3e-85 321.6 312 59.6
MCO16G196 Micromonas commoda HOM05D005483 ORTHO05D006924 6.8e-85 320.1 1145 27.2
Actinidia22108 Actinidia chinensis HOM05D005483 ORTHO05D006924 2.2e-83 315.1 332 58.1
SEGI_02355 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 2.9e-83 314.7 365 49.0
Oeu011729.2 Olea europaea HOM05D005483 ORTHO05D000122 3.8e-67 261.2 333 45.0
SGA_v2.0_scaffold98G29280 Striga asiatica HOM05D005483 ORTHO05D007482 9.9e-60 236.5 319 45.5
RcHm_v2.0_Chr6g0278911 Rosa chinensis HOM05D005483 ORTHO05D006924 1.9e-34 152.5 100 79.0
Pp3c1_41760 Physcomitrium patens HOM05D005483 ORTHO05D006924 7.9e-33 147.1 642 23.2
DCAR_029048 Daucus carota HOM05D005483 ORTHO05D006924 3.1e-29 135.2 110 69.1
Lj6C839G5 Lonicera japonica HOM05D005483 ORTHO05D006924 1.5e-28 132.9 150 55.3
RcHm_v2.0_Chr2g0133761 Rosa chinensis HOM05D005483 ORTHO05D006924 6.5e-27 127.5 86 75.6
RcHm_v2.0_Chr2g0126951 Rosa chinensis HOM05D005483 ORTHO05D006924 5.5e-26 124.4 86 74.4
RcHm_v2.0_Chr5g0056851 Rosa chinensis HOM05D005483 ORTHO05D006924 4.7e-25 121.3 69 73.9
RcHm_v2.0_Chr7g0226991 Rosa chinensis HOM05D005483 ORTHO05D006924 1.8e-24 119.4 64 78.1
Lj2g0025677 Lotus japonicus HOM05D005483 ORTHO05D007091 4.8e-06 58.2 79 45.6


User provided reference genes

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