Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G02976 Aquilegia oxysepala HOM05D001765 ORTHO05D005876 2.5e-78 296.2 156 100.0
Aqoxy5G01535 Aquilegia oxysepala HOM05D001765 ORTHO05D005876 1.3e-74 283.9 156 96.2
Aqoxy1G02157 Aquilegia oxysepala HOM05D001765 ORTHO05D005876 9.3e-70 267.7 156 91.7
MBI19_g07244_MAGBIO Magnolia biondii HOM05D001765 ORTHO05D005876 3.2e-62 242.7 154 85.1
Nn3g21679 Nelumbo nucifera HOM05D001765 ORTHO05D005876 6.1e-61 238.4 154 83.8
TAR633G2429 Trochodendron aralioides HOM05D001765 ORTHO05D005876 1.1e-59 234.2 152 83.6
CSS0002630 Camellia sinensis var. sinensis HOM05D001765 ORTHO05D005876 1.5e-59 233.8 155 80.6
Actinidia40362 Actinidia chinensis HOM05D001765 ORTHO05D005876 5.7e-59 231.9 154 80.5
Nn4g25612 Nelumbo nucifera HOM05D001765 ORTHO05D005876 7.4e-59 231.5 146 85.6
TAR365G0409 Trochodendron aralioides HOM05D001765 ORTHO05D005876 2.8e-58 229.6 145 85.5
CSS0034555 Camellia sinensis var. sinensis HOM05D001765 ORTHO05D005876 2.4e-57 226.5 149 81.9
vmacro08062 Vaccinium macrocarpon HOM05D001765 ORTHO05D005876 2.4e-57 226.5 150 82.7
Rhsim04G0234200 Rhododendron simsii HOM05D001765 ORTHO05D005876 3.1e-57 226.1 150 82.7
ATR0706G059 Amborella trichopoda HOM05D001765 ORTHO05D005876 6.9e-57 224.9 156 80.8
Sed0022335 Sechium edule HOM05D001765 ORTHO05D005876 1.2e-56 224.2 145 81.4
Lj6P689T37 Lonicera japonica HOM05D001765 ORTHO05D005876 2.0e-56 223.4 153 78.4
QL06p011625 Quercus lobata HOM05D001765 ORTHO05D005876 2.0e-56 223.4 149 79.9
Ciclev10005673m.g Citrus clementina HOM05D001765 ORTHO05D005876 2.6e-56 223.0 154 77.9
CDE12G0657 Ceratophyllum demersum HOM05D001765 ORTHO05D005876 3.4e-56 222.6 154 81.2
Atru.chr4.3029 Acer truncatum HOM05D001765 ORTHO05D005876 7.7e-56 221.5 154 77.9
CiPaw.02G075900 Carya illinoinensis HOM05D001765 ORTHO05D005876 7.7e-56 221.5 150 78.7
MD16G1157200 Malus domestica HOM05D001765 ORTHO05D005876 1.3e-55 220.7 156 75.6
Haze_01276 Corylus avellana HOM05D001765 ORTHO05D005876 1.7e-55 220.3 154 76.6
Haze_17391 Corylus avellana HOM05D001765 ORTHO05D005876 1.7e-55 220.3 154 76.6
Hma1.2p1_0013F.1_g008730 Hydrangea macrophylla HOM05D001765 ORTHO05D005876 2.2e-55 219.9 154 79.9
SEGI_21194 Sequoiadendron giganteum HOM05D001765 ORTHO05D005876 2.9e-55 219.5 152 78.9
SEGI_31674 Sequoiadendron giganteum HOM05D001765 ORTHO05D005876 2.9e-55 219.5 152 78.9
FvH4_4g19461 Fragaria vesca HOM05D001765 ORTHO05D005876 6.5e-55 218.4 145 81.4
MD13G1156300 Malus domestica HOM05D001765 ORTHO05D005876 6.5e-55 218.4 149 78.5
TWI73G0761 Tripterygium wilfordii HOM05D001765 ORTHO05D005876 6.5e-55 218.4 154 76.6
ClCG06G004640 Citrullus lanatus HOM05D001765 ORTHO05D005876 1.1e-54 217.6 145 80.0
Hma1.2p1_0078F.1_g040010 Hydrangea macrophylla HOM05D001765 ORTHO05D005876 1.1e-54 217.6 145 82.8
FAN07G0091 Fragaria x ananassa HOM05D001765 ORTHO05D005876 1.4e-54 217.2 145 80.7
Dinv44303 Davidia involucrata HOM05D001765 ORTHO05D005876 1.9e-54 216.9 154 77.9
Prupe.1G073200 Prunus persica HOM05D001765 ORTHO05D005876 1.9e-54 216.9 145 80.7
Cc03_g00980 Coffea canephora HOM05D001765 ORTHO05D005876 2.5e-54 216.5 147 80.3
Solyc01g060030.3 Solanum lycopersicum HOM05D001765 ORTHO05D005876 2.5e-54 216.5 154 76.6
Sopen01g026230 Solanum pennellii HOM05D001765 ORTHO05D005876 2.5e-54 216.5 154 76.6
CANSAT78G1829 Cannabis sativa HOM05D001765 ORTHO05D005876 3.2e-54 216.1 149 78.5
MSTRG.21776 Avicennia marina HOM05D001765 ORTHO05D005876 5.5e-54 215.3 155 77.4
Cpa.g.sc9.87 Carica papaya HOM05D001765 ORTHO05D005876 5.5e-54 215.3 156 76.3
Prupe.1G122100 Prunus persica HOM05D001765 ORTHO05D005876 5.5e-54 215.3 154 76.6
EL10Ac4g08905 Beta vulgaris HOM05D001765 ORTHO05D005876 7.2e-54 214.9 150 78.7
Gorai.006G079200 Gossypium raimondii HOM05D001765 ORTHO05D005876 7.2e-54 214.9 153 76.5
Sc13g0006420 Simmondsia chinensis HOM05D001765 ORTHO05D005876 7.2e-54 214.9 150 78.7
PSO210G5285 Papaver somniferum HOM05D001765 ORTHO05D005876 9.4e-54 214.5 146 81.5
Migut.N00048 Erythranthe guttata HOM05D001765 ORTHO05D005876 1.2e-53 214.2 153 78.4
Gohir.A09G065500 Gossypium hirsutum HOM05D001765 ORTHO05D005876 1.2e-53 214.2 153 77.8
TWI09G0718 Tripterygium wilfordii HOM05D001765 ORTHO05D005876 1.2e-53 214.2 154 76.0
Ah.04g162900 Amaranthus hybridus HOM05D001765 ORTHO05D005876 1.6e-53 213.8 154 76.6
CiPaw.01G139800 Carya illinoinensis HOM05D001765 ORTHO05D005876 1.6e-53 213.8 154 75.3
Gohir.D09G064400 Gossypium hirsutum HOM05D001765 ORTHO05D005876 2.7e-53 213.0 153 75.8
Peaxi162Scf00065g00002 Petunia axillaris HOM05D001765 ORTHO05D005876 2.7e-53 213.0 156 76.9
AUR62037504 Chenopodium quinoa HOM05D001765 ORTHO05D005876 3.6e-53 212.6 150 78.0
unitig_749.g13366 Utricularia gibba HOM05D001765 ORTHO05D005876 3.6e-53 212.6 144 81.2
HanXRQChr05g0145931 Helianthus annuus HOM05D001765 ORTHO05D005876 4.7e-53 212.2 154 76.6
PGR031G3587 Punica granatum HOM05D001765 ORTHO05D005876 4.7e-53 212.2 150 79.3
Nitab4.5_0004323g0040 Nicotiana tabacum HOM05D001765 ORTHO05D005876 7.9e-53 211.5 153 75.8
CAN.G874.72 Capsicum annuum HOM05D001765 ORTHO05D005876 1.0e-52 211.1 155 76.1
Thecc.04G297600 Theobroma cacao HOM05D001765 ORTHO05D005876 1.0e-52 211.1 150 78.0
Nitab4.5_0000276g0120 Nicotiana tabacum HOM05D001765 ORTHO05D005876 1.4e-52 210.7 153 75.8
Duzib052G0074 Durio zibethinus HOM05D001765 ORTHO05D005876 1.8e-52 210.3 150 78.0
Nitab4.5_0000456g0120 Nicotiana tabacum HOM05D001765 ORTHO05D005876 1.8e-52 210.3 153 75.2
Oeu063485.1 Olea europaea HOM05D001765 ORTHO05D005876 1.8e-52 210.3 148 77.7
Gorai.011G199400 Gossypium raimondii HOM05D001765 ORTHO05D005876 2.3e-52 209.9 146 79.5
Nitab4.5_0010629g0030 Nicotiana tabacum HOM05D001765 ORTHO05D005876 3.9e-52 209.1 150 76.7
THA.LOC104802705 Tarenaya hassleriana HOM05D001765 ORTHO05D005876 3.9e-52 209.1 154 74.0
Duzib151G0385 Durio zibethinus HOM05D001765 ORTHO05D005876 6.7e-52 208.4 146 78.1
ECA246G2338 Erigeron canadensis HOM05D001765 ORTHO05D005876 6.7e-52 208.4 153 77.1
Manes.03G202700 Manihot esculenta HOM05D001765 ORTHO05D005876 6.7e-52 208.4 152 76.3
Lalb_Chr13g0298421 Lupinus albus HOM05D001765 ORTHO05D005876 8.8e-52 208.0 143 78.3
Glyma.07G241300 Glycine max HOM05D001765 ORTHO05D005876 1.5e-51 207.2 143 77.6
Potri.010G142400 Populus trichocarpa HOM05D001765 ORTHO05D005876 1.5e-51 207.2 145 76.6
Lsat_1_v5_gn_6_116901 Lactuca sativa HOM05D001765 ORTHO05D005876 2.0e-51 206.8 153 75.2
Gohir.A10G171300 Gossypium hirsutum HOM05D001765 ORTHO05D005876 2.6e-51 206.5 146 78.1
Oeu001465.1 Olea europaea HOM05D001765 ORTHO05D005876 3.3e-51 206.1 148 75.7
PSO761G0153 Papaver somniferum HOM05D001765 ORTHO05D005876 3.3e-51 206.1 146 78.8
Sabra08G0081000 Salix brachista HOM05D001765 ORTHO05D005876 3.3e-51 206.1 145 76.6
Gohir.D10G178400 Gossypium hirsutum HOM05D001765 ORTHO05D005876 4.4e-51 205.7 145 79.3
SGA_v2.0_scaffold119G32663 Striga asiatica HOM05D001765 ORTHO05D005876 4.4e-51 205.7 155 75.5
Glyma.17G032500 Glycine max HOM05D001765 ORTHO05D005876 5.7e-51 205.3 143 76.9
Carub.0008s0928 Capsella rubella HOM05D001765 ORTHO05D005876 7.4e-51 204.9 156 73.7
Ca_21450_v3 Cicer arietinum L. HOM05D001765 ORTHO05D005876 1.3e-50 204.1 156 73.7
TPR.G16856 Trifolium pratense HOM05D001765 ORTHO05D005876 1.3e-50 204.1 143 77.6
MELO3C023334.2 Cucumis melo HOM05D001765 ORTHO05D005876 1.7e-50 203.8 133 82.0
CsaV3_2G015100 Cucumis sativus L. HOM05D001765 ORTHO05D005876 1.7e-50 203.8 134 81.3
DCAR_002506 Daucus carota HOM05D001765 ORTHO05D005876 1.7e-50 203.8 156 76.3
RcHm_v2.0_Chr4g0424571 Rosa chinensis HOM05D001765 ORTHO05D005876 2.2e-50 203.4 132 83.3
Sabra10G0110100 Salix brachista HOM05D001765 ORTHO05D005876 4.8e-50 202.2 145 75.2
THA.LOC104818892 Tarenaya hassleriana HOM05D001765 ORTHO05D005876 1.1e-49 201.1 143 76.9
VMungo1215G2482 Vigna mungo HOM05D001765 ORTHO05D005876 1.1e-49 201.1 143 74.8
Eucgr.A00351 Eucalyptus grandis HOM05D001765 ORTHO05D005876 1.4e-49 200.7 156 71.2
Lalb_Chr07g0182091 Lupinus albus HOM05D001765 ORTHO05D005876 1.4e-49 200.7 147 73.5
Ciclev10016311m.g Citrus clementina HOM05D001765 ORTHO05D005876 1.8e-49 200.3 133 81.2
Psat4g024600 Pisum sativum HOM05D001765 ORTHO05D005876 1.8e-49 200.3 155 74.2
Potri.008G107100 Populus trichocarpa HOM05D001765 ORTHO05D005876 2.4e-49 199.9 145 75.2
AUR62004747 Chenopodium quinoa HOM05D001765 ORTHO05D005876 3.1e-49 199.5 138 79.0
VMungo0647G0513 Vigna mungo HOM05D000091 ORTHO05D005533 7.0e-49 198.4 141 75.9
Phvul.003G112500 Phaseolus vulgaris HOM05D001765 ORTHO05D005876 1.2e-48 197.6 143 74.8
BcaC03g17719 Brassica carinata HOM05D001765 ORTHO05D005876 2.0e-48 196.8 151 73.5
C02p57300 Brassica napus HOM05D001765 ORTHO05D003527 2.0e-48 196.8 151 73.5
BolC2t11799H Brassica oleracea HOM05D001765 ORTHO05D003527 2.0e-48 196.8 151 73.5
CDE01G0626 Ceratophyllum demersum HOM05D001765 ORTHO05D005876 2.6e-48 196.4 156 73.1
Thhalv10004753m.g Eutrema salsugineum HOM05D001765 ORTHO05D005876 3.5e-48 196.1 145 76.6
A06p38370 Brassica napus HOM05D001765 ORTHO05D005876 4.5e-48 195.7 148 74.3
BolC7t44518H Brassica oleracea HOM05D001765 ORTHO05D005876 4.5e-48 195.7 157 70.7
BraA06t26751Z Brassica rapa HOM05D001765 ORTHO05D005876 4.5e-48 195.7 148 74.3
COL.COLO4_11257 Corchorus olitorius HOM05D001765 ORTHO05D005876 4.5e-48 195.7 147 74.8
COL.COLO4_34649 Corchorus olitorius HOM05D001765 ORTHO05D005123 4.5e-48 195.7 155 70.3
Sed0021764 Sechium edule HOM05D001765 ORTHO05D005876 7.7e-48 194.9 130 80.8
Aa31LG11G7990 Aethionema arabicum HOM05D001765 ORTHO05D005876 1.0e-47 194.5 155 71.6
Sp2g19740 Schrenkiella parvula HOM05D001765 ORTHO05D005876 1.0e-47 194.5 147 74.8
SpUn0021_0110 Schrenkiella parvula HOM05D001765 ORTHO05D005876 1.0e-47 194.5 147 74.8
CARHR182130 Cardamine hirsuta HOM05D001765 ORTHO05D005876 1.3e-47 194.1 153 72.5
arahy.Tifrunner.gnm1.ann1.03CYAA Arachis hypogaea HOM05D001765 ORTHO05D005876 1.7e-47 193.7 133 78.9
AT5G49400 Arabidopsis thaliana HOM05D001765 ORTHO05D005876 2.2e-47 193.4 148 73.0
BcaC06g30699 Brassica carinata HOM05D001765 ORTHO05D005876 2.2e-47 193.4 148 73.0
BcaNung02601 Brassica carinata HOM05D001765 ORTHO05D005876 2.2e-47 193.4 157 70.1
C07p39890 Brassica napus HOM05D001765 ORTHO05D005876 2.2e-47 193.4 157 70.1
A02p38130 Brassica napus HOM05D001765 ORTHO05D003527 2.9e-47 193.0 139 76.3
AL8G23110 Arabidopsis lyrata HOM05D001765 ORTHO05D005876 5.0e-47 192.2 148 72.3
Os11g0199600 Oryza sativa ssp. japonica HOM05D001765 ORTHO05D005876 5.0e-47 192.2 145 73.8
Phvul.008G245800 Phaseolus vulgaris HOM05D001765 ORTHO05D005876 5.0e-47 192.2 149 71.8
Phvul.009G074533 Phaseolus vulgaris HOM05D001765 ORTHO05D005876 5.0e-47 192.2 149 71.8
Zm00001eb328920 Zea mays HOM05D001765 ORTHO05D005876 9.4e-46 188.0 147 72.1
Zm00001eb109890 Zea mays HOM05D001765 ORTHO05D005876 1.6e-45 187.2 148 70.9
BraA02t08788Z Brassica rapa HOM05D001765 ORTHO05D005876 3.6e-45 186.0 146 73.3
Mapoly0023s0038 Marchantia polymorpha HOM05D001765 ORTHO05D005876 3.6e-45 186.0 164 66.5
Lj4g0023600 Lotus japonicus HOM05D001765 ORTHO05D005876 3.0e-44 183.0 136 75.0
Pp3c14_13970 Physcomitrium patens HOM05D001765 ORTHO05D005876 5.2e-44 182.2 136 75.7
AagrBONN_evm.TU.Sc2ySwM_362.810 Anthoceros agrestis HOM05D001765 ORTHO05D005876 6.7e-44 181.8 155 69.0
Mapoly0171s0012 Marchantia polymorpha HOM05D001765 ORTHO05D005876 1.6e-40 170.6 157 63.1
Manes.15G005450 Manihot esculenta HOM05D001765 ORTHO05D005876 1.7e-39 167.2 134 68.7
BcaB07g34154 Brassica carinata HOM05D001765 ORTHO05D005876 2.9e-39 166.4 131 71.8
MBI19_g17409_MAGBIO Magnolia biondii HOM05D001765 ORTHO05D005876 1.2e-37 161.0 154 64.9
Pp3c14_17690 Physcomitrium patens HOM05D001765 ORTHO05D005876 2.1e-37 160.2 133 66.2
Nitab4.5_0004323g0070 Nicotiana tabacum HOM05D001765 ORTHO05D005876 2.3e-36 156.8 114 78.1
AagrBONN_evm.TU.Sc2ySwM_228.5656 Anthoceros agrestis HOM05D001765 ORTHO05D005876 1.5e-35 154.1 121 73.6
SMO340G0272 Selaginella moellendorffii HOM05D001765 ORTHO05D005876 5.9e-32 142.1 119 67.2
CBR_g53494 Chara braunii HOM05D000188 ORTHO05D005876 1.5e-30 137.5 138 63.8
Zm00001eb091100 Zea mays HOM05D001765 ORTHO05D005876 2.0e-27 127.1 128 58.6
Zm00001eb276930 Zea mays HOM05D001765 ORTHO05D005876 2.0e-27 127.1 109 67.0
GSVIVG01035017001 Vitis vinifera HOM05D001765 ORTHO05D005876 1.7e-26 124.0 84 85.7
CAN.G201.7 Capsicum annuum HOM05D001765 ORTHO05D005876 2.3e-23 113.6 150 51.3
HanXRQChr13g0395311 Helianthus annuus HOM05D001765 ORTHO05D005876 5.0e-23 112.5 142 49.3
Lsat_1_v5_gn_6_18261 Lactuca sativa HOM05D001765 ORTHO05D005876 5.0e-23 112.5 143 49.7
SEGI_08255 Sequoiadendron giganteum HOM05D001765 ORTHO05D005876 2.5e-22 110.2 113 60.2
ATR1159G054 Amborella trichopoda HOM05D001765 ORTHO05D005876 2.1e-21 107.1 91 64.8
ECA233G0063 Erigeron canadensis HOM05D001765 ORTHO05D005876 1.8e-20 104.0 100 60.0
CAN.G197.3 Capsicum annuum HOM05D001765 ORTHO05D005876 2.2e-18 97.1 72 76.4
Zm00001eb408400 Zea mays HOM05D001765 ORTHO05D005876 1.4e-17 94.4 84 67.9
Medtr1g032030 Medicago truncatula HOM05D001765 ORTHO05D005876 2.4e-17 93.6 91 64.8
Medtr1g032370 Medicago truncatula HOM05D001765 ORTHO05D005876 2.4e-17 93.6 91 64.8
ATR1159G066 Amborella trichopoda HOM05D001765 ORTHO05D005876 3.5e-16 89.7 64 82.8
ATR1159G071 Amborella trichopoda HOM05D001765 ORTHO05D005876 4.6e-16 89.4 66 81.8
Cre12.g529200 Chlamydomonas reinhardtii HOM05D001765 ORTHO05D005876 5.0e-07 59.3 67 44.8
Dinv15195 Davidia involucrata HOM05D002174 ORTHO05D005447 1.1e-06 58.2 44 68.2


User provided reference genes

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