Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G02503 Aquilegia oxysepala HOM05D003397 ORTHO05D004390 7.9e-48 193.4 92 100.0
CDE05G2113 Ceratophyllum demersum HOM05D003397 ORTHO05D004390 1.7e-18 95.9 91 58.2
Aqoxy5G01966 Aquilegia oxysepala HOM05D003397 ORTHO05D004390 4.1e-12 74.7 53 73.6
Nn5g29020 Nelumbo nucifera HOM05D003397 ORTHO05D004390 4.1e-12 74.7 53 71.7
TAR625G1432 Trochodendron aralioides HOM05D003397 ORTHO05D004390 7.0e-12 73.9 53 71.7
Nn1g05275 Nelumbo nucifera HOM05D003397 ORTHO05D004390 9.2e-12 73.6 53 71.7
PSO210G7545 Papaver somniferum HOM05D003397 ORTHO05D004390 9.2e-12 73.6 53 67.9
PSO447G0125 Papaver somniferum HOM05D003397 ORTHO05D004390 9.2e-12 73.6 53 67.9
CDE05G1314 Ceratophyllum demersum HOM05D003397 ORTHO05D004390 1.2e-11 73.2 53 69.8
ECA232G1190 Erigeron canadensis HOM05D003397 ORTHO05D004390 1.2e-11 73.2 53 69.8
Manes.18G070300 Manihot esculenta HOM05D003397 ORTHO05D004390 2.7e-11 72.0 53 71.7
Lj4C108T3 Lonicera japonica HOM05D003397 ORTHO05D004390 3.5e-11 71.6 53 67.9
Actinidia33153 Actinidia chinensis HOM05D003397 ORTHO05D004390 4.5e-11 71.2 53 67.9
EL10Ac1g01671 Beta vulgaris HOM05D003397 ORTHO05D004390 5.9e-11 70.9 53 66.0
Cfa015924 Carpinus fangiana HOM05D003397 ORTHO05D004390 5.9e-11 70.9 53 67.9
Ciclev10000007m.g Citrus clementina HOM05D003397 ORTHO05D004390 5.9e-11 70.9 53 67.9
Haze_00572 Corylus avellana HOM05D003397 ORTHO05D004390 5.9e-11 70.9 53 67.9
CSS0006750 Camellia sinensis var. sinensis HOM05D003397 ORTHO05D004390 7.8e-11 70.5 53 64.2
CiPaw.05G233000 Carya illinoinensis HOM05D003397 ORTHO05D004390 7.8e-11 70.5 53 67.9
CiPaw.06G022200 Carya illinoinensis HOM05D003397 ORTHO05D004390 7.8e-11 70.5 53 67.9
Cc10_g05850 Coffea canephora HOM05D003397 ORTHO05D004390 7.8e-11 70.5 53 67.9
MBI02_g30884_MAGBIO Magnolia biondii HOM05D003397 ORTHO05D004390 7.8e-11 70.5 53 66.0
Manes.02G155300 Manihot esculenta HOM05D003397 ORTHO05D004390 7.8e-11 70.5 53 67.9
Potri.002G092700 Populus trichocarpa HOM05D003397 ORTHO05D004390 7.8e-11 70.5 53 66.0
SEGI_22371 Sequoiadendron giganteum HOM05D003397 ORTHO05D004390 7.8e-11 70.5 53 67.9
Sc04g0006510 Simmondsia chinensis HOM05D003397 ORTHO05D004390 7.8e-11 70.5 53 66.0
Sc20g0003310 Simmondsia chinensis HOM05D003397 ORTHO05D004390 7.8e-11 70.5 53 66.0
Dinv13041 Davidia involucrata HOM05D003397 ORTHO05D004390 1.0e-10 70.1 53 66.0
Eucgr.F00484 Eucalyptus grandis HOM05D003397 ORTHO05D004390 1.0e-10 70.1 53 66.0
Ah.05g168580 Amaranthus hybridus HOM05D003397 ORTHO05D004390 1.3e-10 69.7 53 67.9
MSTRG.944 Avicennia marina HOM05D003397 ORTHO05D004390 1.3e-10 69.7 53 66.0
CSS0020243 Camellia sinensis var. sinensis HOM05D003397 ORTHO05D004390 1.3e-10 69.7 53 64.2
CSS0020930 Camellia sinensis var. sinensis HOM05D003397 ORTHO05D004390 1.3e-10 69.7 53 64.2
MELO3C022793.2 Cucumis melo HOM05D003397 ORTHO05D004390 1.3e-10 69.7 53 66.0
CsaV3_5G023610 Cucumis sativus L. HOM05D003397 ORTHO05D004390 1.3e-10 69.7 53 66.0
Hma1.2p1_0120F.1_g057070 Hydrangea macrophylla HOM05D003397 ORTHO05D004390 1.3e-10 69.7 53 64.2
Actinidia29577 Actinidia chinensis HOM05D003397 ORTHO05D004390 1.7e-10 69.3 53 64.2
arahy.Tifrunner.gnm1.ann1.L14VXE Arachis hypogaea HOM05D003397 ORTHO05D004390 1.7e-10 69.3 53 66.0
arahy.Tifrunner.gnm1.ann1.ZST20A Arachis hypogaea HOM05D003397 ORTHO05D004390 1.7e-10 69.3 53 66.0
Prupe.1G512000 Prunus persica HOM05D003397 ORTHO05D004390 1.7e-10 69.3 53 67.9
ECA236G4037 Erigeron canadensis HOM05D003397 ORTHO05D004390 2.3e-10 68.9 53 64.2
Nitab4.5_0000469g0180 Nicotiana tabacum HOM05D003397 ORTHO05D004390 2.3e-10 68.9 53 67.9
Nitab4.5_0005253g0020 Nicotiana tabacum HOM05D003397 ORTHO05D004390 2.3e-10 68.9 53 67.9
Peaxi162Scf00310g00211 Petunia axillaris HOM05D003397 ORTHO05D004390 2.3e-10 68.9 53 67.9
Psat3g154520 Pisum sativum HOM05D004511 ORTHO05D005348 2.3e-10 68.9 53 67.9
TWI56G0794 Tripterygium wilfordii HOM05D003397 ORTHO05D004390 2.3e-10 68.9 53 67.9
TAR381G1558 Trochodendron aralioides HOM05D003397 ORTHO05D004390 2.3e-10 68.9 53 67.9
Duzib116G0371 Durio zibethinus HOM05D003397 ORTHO05D004390 2.9e-10 68.6 53 67.9
Gohir.D05G269700 Gossypium hirsutum HOM05D003397 ORTHO05D004390 2.9e-10 68.6 53 67.9
Gorai.009G282300 Gossypium raimondii HOM05D003397 ORTHO05D004390 2.9e-10 68.6 53 67.9
Lalb_Chr11g0065541 Lupinus albus HOM05D003397 ORTHO05D004390 2.9e-10 68.6 53 64.2
Nitab4.5_0000421g0140 Nicotiana tabacum HOM05D003397 ORTHO05D004390 2.9e-10 68.6 53 66.0
HPP92_027255 Vanilla planifolia HOM05D003397 ORTHO05D004390 2.9e-10 68.6 53 66.0
Oeu024555.1 Olea europaea HOM05D003397 ORTHO05D004390 3.8e-10 68.2 53 66.0
Potri.005G169100 Populus trichocarpa HOM05D003397 ORTHO05D004390 3.8e-10 68.2 53 67.9
Atru.chr13.1263 Acer truncatum HOM05D003397 ORTHO05D004390 5.0e-10 67.8 53 66.0
HanXRQChr05g0147241 Helianthus annuus HOM05D003397 ORTHO05D004390 5.0e-10 67.8 53 66.0
MD08G1178000 Malus domestica HOM05D003397 ORTHO05D004390 5.0e-10 67.8 53 67.9
PGR042G1140 Punica granatum HOM05D003397 ORTHO05D004390 5.0e-10 67.8 53 64.2
Rhsim07G0200500 Rhododendron simsii HOM05D003397 ORTHO05D004390 5.0e-10 67.8 54 61.1
SHI09383 Sapria himalayana HOM05D003397 ORTHO05D004390 5.0e-10 67.8 82 51.2
Sed0010592 Sechium edule HOM05D003397 ORTHO05D004390 5.0e-10 67.8 53 64.2
Migut.C00221 Erythranthe guttata HOM05D003397 ORTHO05D004390 6.6e-10 67.4 53 66.0
FvH4_5g38000 Fragaria vesca HOM05D003397 ORTHO05D004390 6.6e-10 67.4 53 66.0
FAN04G2782 Fragaria x ananassa HOM05D003397 ORTHO05D004390 6.6e-10 67.4 53 66.0
FAN13G2833 Fragaria x ananassa HOM05D003397 ORTHO05D004390 6.6e-10 67.4 53 66.0
FAN18G1561 Fragaria x ananassa HOM05D003397 ORTHO05D004390 6.6e-10 67.4 53 66.0
Gohir.A01G186450 Gossypium hirsutum HOM05D003397 ORTHO05D004390 6.6e-10 67.4 53 66.0
Gorai.002G219400 Gossypium raimondii HOM05D003397 ORTHO05D004390 6.6e-10 67.4 53 66.0
HanXRQChr11g0320961 Helianthus annuus HOM05D003397 ORTHO05D004390 6.6e-10 67.4 53 66.0
RcHm_v2.0_Chr7g0239931 Rosa chinensis HOM05D003397 ORTHO05D004390 6.6e-10 67.4 53 64.2
TWI12G0718 Tripterygium wilfordii HOM05D003397 ORTHO05D004390 6.6e-10 67.4 53 66.0
Ca_15227_v3 Cicer arietinum L. HOM05D003397 ORTHO05D004390 8.6e-10 67.0 53 67.9
Glyma.04G104900 Glycine max HOM05D003397 ORTHO05D004390 8.6e-10 67.0 53 67.9
Glyma.06G105900 Glycine max HOM05D003397 ORTHO05D004390 8.6e-10 67.0 53 67.9
Phvul.009G028700 Phaseolus vulgaris HOM05D003397 ORTHO05D004390 8.6e-10 67.0 53 67.9
TPR.G34613 Trifolium pratense HOM05D003397 ORTHO05D004390 8.6e-10 67.0 53 67.9
VMungo1309G3072 Vigna mungo HOM05D003397 ORTHO05D004390 8.6e-10 67.0 53 67.9
ATR0564G238 Amborella trichopoda HOM05D003397 ORTHO05D004390 1.1e-09 66.6 53 62.3
COL.COLO4_16461 Corchorus olitorius HOM05D003397 ORTHO05D004390 1.1e-09 66.6 53 66.0
FAN08G3668 Fragaria x ananassa HOM05D003397 ORTHO05D004390 1.1e-09 66.6 53 64.2
Thecc.08G111500 Theobroma cacao HOM05D003397 ORTHO05D004390 1.1e-09 66.6 53 66.0
Lsat_1_v5_gn_9_44420 Lactuca sativa HOM05D003397 ORTHO05D004390 1.5e-09 66.2 53 64.2
Os10g0363300 Oryza sativa ssp. japonica HOM05D003397 ORTHO05D004390 1.5e-09 66.2 53 67.9
unitig_46.g18003 Utricularia gibba HOM05D003397 ORTHO05D004390 1.5e-09 66.2 53 64.2
GSVIVG01008991001 Vitis vinifera HOM05D003397 ORTHO05D004390 1.5e-09 66.2 53 64.2
DCAR_013178 Daucus carota HOM05D003397 ORTHO05D004390 1.9e-09 65.9 53 64.2
Medtr3g073860 Medicago truncatula HOM05D003397 ORTHO05D004390 1.9e-09 65.9 53 66.0
Sabra02G0073200 Salix brachista HOM05D003397 ORTHO05D004390 1.9e-09 65.9 53 64.2
THA.LOC104813126 Tarenaya hassleriana HOM05D003397 ORTHO05D004390 1.9e-09 65.9 53 64.2
Lj1g0005089 Lotus japonicus HOM05D003397 ORTHO05D004390 2.5e-09 65.5 53 64.2
Solyc12g056940.2 Solanum lycopersicum HOM05D003397 ORTHO05D004390 2.5e-09 65.5 53 64.2
Sopen12g029600 Solanum pennellii HOM05D003397 ORTHO05D004390 2.5e-09 65.5 53 64.2
PGSC0003DMG400008551 Solanum tuberosum HOM05D003397 ORTHO05D004390 2.5e-09 65.5 53 64.2
Zm00001eb086560 Zea mays HOM05D003397 ORTHO05D004390 2.5e-09 65.5 53 62.3
Zm00001eb419400 Zea mays HOM05D003397 ORTHO05D004390 2.5e-09 65.5 53 62.3
CANSAT25G3899 Cannabis sativa HOM05D003397 ORTHO05D004390 3.3e-09 65.1 53 66.0
Lalb_Chr08g0241871 Lupinus albus HOM05D003397 ORTHO05D004390 3.3e-09 65.1 53 64.2
MD15G1363500 Malus domestica HOM05D003397 ORTHO05D004390 3.3e-09 65.1 53 64.2
Peaxi162Scf00160g01527 Petunia axillaris HOM05D003397 ORTHO05D004390 4.3e-09 64.7 53 64.2
SGA_v2.0_scaffold201G41423 Striga asiatica HOM05D003397 ORTHO05D004390 4.3e-09 64.7 53 62.3
Zm00001eb223980 Zea mays HOM05D003397 ORTHO05D004390 4.3e-09 64.7 53 66.0
Medtr3g073820 Medicago truncatula HOM05D003397 ORTHO05D004390 5.6e-09 64.3 53 64.2
vmacro04766 Vaccinium macrocarpon HOM05D003397 ORTHO05D004390 5.6e-09 64.3 53 62.3
Aa31LG6G8980 Aethionema arabicum HOM05D003397 ORTHO05D004390 7.3e-09 63.9 53 62.3
BcaB04g17823 Brassica carinata HOM05D003397 ORTHO05D004390 7.3e-09 63.9 53 62.3
BcaC07g37499 Brassica carinata HOM05D003397 ORTHO05D004390 7.3e-09 63.9 53 62.3
A08p07970 Brassica napus HOM05D003397 ORTHO05D004390 7.3e-09 63.9 53 62.3
BolC8t47818H Brassica oleracea HOM05D003397 ORTHO05D004390 7.3e-09 63.9 53 62.3
BraA08t32819Z Brassica rapa HOM05D003397 ORTHO05D004390 7.3e-09 63.9 53 62.3
Peaxi162Scf00030g01821 Petunia axillaris HOM05D003397 ORTHO05D004390 7.3e-09 63.9 53 62.3
QL12p035954 Quercus lobata HOM05D003397 ORTHO05D004390 7.3e-09 63.9 53 60.4
CARHR034860 Cardamine hirsuta HOM05D003397 ORTHO05D004390 9.5e-09 63.5 53 60.4
AUR62022354 Chenopodium quinoa HOM05D003397 ORTHO05D004390 9.5e-09 63.5 53 58.5
Gohir.D01G183100 Gossypium hirsutum HOM05D003397 ORTHO05D004390 9.5e-09 63.5 53 64.2
BcaB07g33794 Brassica carinata HOM05D003397 ORTHO05D004390 1.2e-08 63.2 53 64.2
A06p04730 Brassica napus HOM05D003397 ORTHO05D004390 1.2e-08 63.2 53 64.2
BraA06t23676Z Brassica rapa HOM05D003397 ORTHO05D004390 1.2e-08 63.2 53 64.2
Mapoly0002s0049 Marchantia polymorpha HOM05D003397 ORTHO05D004390 1.2e-08 63.2 53 58.5
Nitab4.5_0006548g0020 Nicotiana tabacum HOM05D003397 ORTHO05D004390 1.2e-08 63.2 53 62.3
Sp1g30640 Schrenkiella parvula HOM05D003397 ORTHO05D004390 1.2e-08 63.2 53 62.3
AT1G36160 Arabidopsis thaliana HOM05D003397 ORTHO05D004390 2.1e-08 62.4 53 62.3
BcaC08g43005 Brassica carinata HOM05D003397 ORTHO05D004390 2.1e-08 62.4 53 62.3
C06p02460 Brassica napus HOM05D003397 ORTHO05D004390 2.1e-08 62.4 53 62.3
BolC6t35373H Brassica oleracea HOM05D003397 ORTHO05D004390 2.1e-08 62.4 53 62.3
AL1G50880 Arabidopsis lyrata HOM05D003397 ORTHO05D004390 2.8e-08 62.0 53 60.4
AagrBONN_evm.TU.Sc2ySwM_228.4168 Anthoceros agrestis HOM05D003397 ORTHO05D004390 4.7e-08 61.2 53 58.5
AL1G50870 Arabidopsis lyrata HOM05D003397 ORTHO05D004390 4.7e-08 61.2 53 60.4
AUR62034355 Chenopodium quinoa HOM05D003397 ORTHO05D004390 4.7e-08 61.2 53 56.6
Psat5g137080 Pisum sativum HOM05D003397 ORTHO05D004390 6.1e-08 60.8 129 36.4
Carub.0001s3361 Capsella rubella HOM05D003397 ORTHO05D004390 8.0e-08 60.5 53 60.4
AT1G36180 Arabidopsis thaliana HOM05D003397 ORTHO05D004390 1.0e-07 60.1 53 58.5
CANSAT11G0938 Cannabis sativa HOM05D003397 ORTHO05D004390 1.4e-07 59.7 53 62.3
CARHR034880 Cardamine hirsuta HOM05D003397 ORTHO05D004390 1.4e-07 59.7 53 58.5
SMO336G0042 Selaginella moellendorffii HOM05D003397 ORTHO05D004390 6.8e-07 57.4 53 54.7
Pp3c4_17500 Physcomitrium patens HOM05D003397 ORTHO05D004390 1.2e-06 56.6 43 67.4
FAN08G1690 Fragaria x ananassa HOM05D003397 ORTHO05D004390 2.0e-06 55.8 65 49.2
SHI09639 Sapria himalayana HOM05D003397 ORTHO05D004390 2.0e-06 55.8 44 63.6
CBR_g21136 Chara braunii HOM05D003397 ORTHO05D004390 2.6e-06 55.5 48 56.2
Pp3c13_14480 Physcomitrium patens HOM05D003397 ORTHO05D004390 2.6e-06 55.5 53 54.7


User provided reference genes

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