Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G02271 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 1.5e-50 202.6 104 100.0
Aqoxy7G01925 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 2.1e-33 145.6 95 81.1
PSO063G2909 Papaver somniferum HOM05D004389 ORTHO05D005457 2.8e-33 145.2 92 78.3
TAR626G0408 Trochodendron aralioides HOM05D004389 ORTHO05D005457 3.7e-33 144.8 94 78.7
PSO782G4098 Papaver somniferum HOM05D004389 ORTHO05D005457 8.1e-33 143.7 93 78.5
TAR383G0075 Trochodendron aralioides HOM05D004389 ORTHO05D005457 3.4e-31 138.3 95 76.8
Haze_23899 Corylus avellana HOM05D004389 ORTHO05D005457 5.8e-31 137.5 94 72.3
Cfa006553 Carpinus fangiana HOM05D004389 ORTHO05D003318 3.8e-30 134.8 94 70.2
Actinidia05713 Actinidia chinensis HOM05D004389 ORTHO05D005457 4.9e-30 134.4 94 72.3
Rhsim05G0143800 Rhododendron simsii HOM05D004389 ORTHO05D005457 4.9e-30 134.4 94 72.3
Haze_04228 Corylus avellana HOM05D004389 ORTHO05D005457 6.5e-30 134.0 94 71.3
Dinv23968 Davidia involucrata HOM05D004389 ORTHO05D005457 6.5e-30 134.0 94 71.3
GSVIVG01006266001 Vitis vinifera HOM05D004389 ORTHO05D005457 6.5e-30 134.0 94 71.3
CDE02G2165 Ceratophyllum demersum HOM05D004389 ORTHO05D005457 8.4e-30 133.7 94 70.2
CiPaw.07G015300 Carya illinoinensis HOM05D004389 ORTHO05D005457 1.1e-29 133.3 94 70.2
COL.COLO4_29544 Corchorus olitorius HOM05D004389 ORTHO05D005457 1.1e-29 133.3 94 71.3
Nn8g41138 Nelumbo nucifera HOM05D004389 ORTHO05D005457 1.1e-29 133.3 94 75.5
vmacro19638 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 1.1e-29 133.3 94 70.2
Cc02_g33710 Coffea canephora HOM05D004389 ORTHO05D005457 1.9e-29 132.5 94 71.3
CSS0010710 Camellia sinensis var. sinensis HOM05D004389 ORTHO05D005457 3.2e-29 131.7 94 68.1
Sabra05G0037000 Salix brachista HOM05D004389 ORTHO05D005457 4.2e-29 131.3 94 69.1
vmacro08924 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 5.5e-29 131.0 94 68.1
Ciclev10018002m.g Citrus clementina HOM05D004389 ORTHO05D005457 7.1e-29 130.6 94 70.2
COL.COLO4_19842 Corchorus olitorius HOM05D004389 ORTHO05D005457 7.1e-29 130.6 94 70.2
Migut.N00707 Erythranthe guttata HOM05D004389 ORTHO05D005457 9.3e-29 130.2 89 73.0
Lj7A473T46 Lonicera japonica HOM05D004389 ORTHO05D005457 9.3e-29 130.2 95 69.5
RcHm_v2.0_Chr3g0454251 Rosa chinensis HOM05D004389 ORTHO05D005457 9.3e-29 130.2 94 72.3
Duzib177G0146 Durio zibethinus HOM05D004389 ORTHO05D005457 1.2e-28 129.8 94 69.1
FAN09G0842 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.2e-28 129.8 94 72.3
Prupe.6G329200 Prunus persica HOM05D004389 ORTHO05D005457 1.2e-28 129.8 94 71.3
GSVIVG01000019001 Vitis vinifera HOM05D004389 ORTHO05D005457 1.2e-28 129.8 94 70.2
FAN05G1752 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.6e-28 129.4 94 72.3
Thecc.05G307100 Theobroma cacao HOM05D004389 ORTHO05D005457 1.6e-28 129.4 94 69.1
FvH4_5g27531 Fragaria vesca HOM05D004389 ORTHO05D005457 2.1e-28 129.0 94 70.2
FAN05G0500 Fragaria x ananassa HOM05D004389 ORTHO05D005457 2.1e-28 129.0 94 72.3
FAN18G1342 Fragaria x ananassa HOM05D004389 ORTHO05D005457 2.1e-28 129.0 94 70.2
Atru.chr2.467 Acer truncatum HOM05D004389 ORTHO05D005457 3.5e-28 128.3 94 69.1
FAN14G5008 Fragaria x ananassa HOM05D004389 ORTHO05D005457 4.6e-28 127.9 94 70.2
Gorai.004G242800 Gossypium raimondii HOM05D004389 ORTHO05D005457 4.6e-28 127.9 94 70.2
Lj9C683G9 Lonicera japonica HOM05D004389 ORTHO05D005457 4.6e-28 127.9 92 66.3
CSS0006579 Camellia sinensis var. sinensis HOM05D004389 ORTHO05D005457 7.9e-28 127.1 89 70.8
FvH4_6g05471 Fragaria vesca HOM05D004389 ORTHO05D005457 7.9e-28 127.1 94 71.3
Oeu045484.1 Olea europaea HOM05D004389 ORTHO05D005457 1.0e-27 126.7 89 71.9
QL03p004595 Quercus lobata HOM05D004389 ORTHO05D005457 1.0e-27 126.7 94 67.0
Hund07052 Selenicereus undatus HOM05D004389 ORTHO05D005457 1.0e-27 126.7 92 67.4
Gohir.A08G211800 Gossypium hirsutum HOM05D004389 ORTHO05D005457 1.3e-27 126.3 94 69.1
MBI16_g00840_MAGBIO Magnolia biondii HOM05D004389 ORTHO05D005457 1.8e-27 125.9 94 67.0
MD04G1208300 Malus domestica HOM05D004389 ORTHO05D005457 1.8e-27 125.9 94 69.1
TWI73G0431 Tripterygium wilfordii HOM05D004389 ORTHO05D005457 1.8e-27 125.9 89 69.7
FAN05G0231 Fragaria x ananassa HOM05D004389 ORTHO05D005457 2.3e-27 125.6 94 70.2
FAN05G0672 Fragaria x ananassa HOM05D004389 ORTHO05D005457 2.3e-27 125.6 94 70.2
Nitab4.5_0002329g0100 Nicotiana tabacum HOM05D004389 ORTHO05D005457 2.3e-27 125.6 94 70.2
Potri.005G036500 Populus trichocarpa HOM05D004389 ORTHO05D005457 2.3e-27 125.6 94 66.0
PGSC0003DMG400030976 Solanum tuberosum HOM05D004389 ORTHO05D005457 2.3e-27 125.6 94 69.1
AUR62006921 Chenopodium quinoa HOM05D004389 ORTHO05D005457 3.0e-27 125.2 92 69.6
HanXRQChr14g0460141 Helianthus annuus HOM05D004389 ORTHO05D005457 3.0e-27 125.2 90 68.9
Sopen12g004700 Solanum pennellii HOM05D004389 ORTHO05D005457 3.0e-27 125.2 94 70.2
Sabra13G0026700 Salix brachista HOM05D004389 ORTHO05D005457 3.9e-27 124.8 94 67.0
CANSAT21G2311 Cannabis sativa HOM05D004389 ORTHO05D005457 5.1e-27 124.4 94 70.2
Duzib128G0997 Durio zibethinus HOM05D004389 ORTHO05D005457 6.7e-27 124.0 94 68.1
Manes.09G078200 Manihot esculenta HOM05D004389 ORTHO05D005457 6.7e-27 124.0 94 67.0
PGR031G3032 Punica granatum HOM05D004389 ORTHO05D005457 6.7e-27 124.0 87 70.1
Solyc12g009810.3 Solanum lycopersicum HOM05D004389 ORTHO05D005457 6.7e-27 124.0 89 70.8
TPR.G33525 Trifolium pratense HOM05D004389 ORTHO05D005457 6.7e-27 124.0 91 71.4
Gohir.D08G228501 Gossypium hirsutum HOM05D004389 ORTHO05D005457 1.1e-26 123.2 94 68.1
CAN.G551.74 Capsicum annuum HOM05D004389 ORTHO05D005457 1.5e-26 122.9 89 69.7
Sc16g0008410 Simmondsia chinensis HOM05D004389 ORTHO05D005457 1.9e-26 122.5 89 66.3
CANSAT21G1920 Cannabis sativa HOM05D004389 ORTHO05D005457 2.5e-26 122.1 94 69.1
Cpa.g.sc58.76 Carica papaya HOM05D004389 ORTHO05D005457 2.5e-26 122.1 89 66.3
DCAR_008416 Daucus carota HOM05D004389 ORTHO05D005457 2.5e-26 122.1 89 67.4
Nitab4.5_0000401g0080 Nicotiana tabacum HOM05D004389 ORTHO05D005457 2.5e-26 122.1 94 69.1
PGSC0003DMG402007838 Solanum tuberosum HOM05D004389 ORTHO05D005457 2.5e-26 122.1 94 68.1
Nitab4.5_0002659g0010 Nicotiana tabacum HOM05D004389 ORTHO05D005457 3.3e-26 121.7 82 75.6
Potri.013G025600 Populus trichocarpa HOM05D004389 ORTHO05D005457 3.3e-26 121.7 94 66.0
Nitab4.5_0006964g0010 Nicotiana tabacum HOM05D004389 ORTHO05D005457 4.3e-26 121.3 94 68.1
arahy.Tifrunner.gnm1.ann1.95MSG7 Arachis hypogaea HOM05D004389 ORTHO05D005457 5.7e-26 120.9 94 62.8
AUR62000890 Chenopodium quinoa HOM05D004389 ORTHO05D005457 5.7e-26 120.9 92 67.4
Hma1.2p1_0666F.1_g199560 Hydrangea macrophylla HOM05D004389 ORTHO05D005457 5.7e-26 120.9 94 66.0
Hma1.2p1_1362F.1_g278175 Hydrangea macrophylla HOM05D004389 ORTHO05D005457 5.7e-26 120.9 94 66.0
Medtr3g115100 Medicago truncatula HOM05D004389 ORTHO05D005457 5.7e-26 120.9 91 68.1
A01p20570 Brassica napus HOM05D004389 ORTHO05D005457 7.4e-26 120.6 90 68.9
Eucgr.H04472 Eucalyptus grandis HOM05D004389 ORTHO05D005457 7.4e-26 120.6 94 63.8
THA.LOC104805865 Tarenaya hassleriana HOM05D004389 ORTHO05D005457 7.4e-26 120.6 89 66.3
Ah.04g159790 Amaranthus hybridus HOM05D004389 ORTHO05D005457 9.6e-26 120.2 91 68.1
ATR0626G001 Amborella trichopoda HOM05D004389 ORTHO05D005457 9.6e-26 120.2 94 66.0
AUR62005084 Chenopodium quinoa HOM05D004389 ORTHO05D005457 9.6e-26 120.2 92 65.2
Ciclev10002655m.g Citrus clementina HOM05D004389 ORTHO05D005457 9.6e-26 120.2 94 64.9
ECA236G1487 Erigeron canadensis HOM05D004389 ORTHO05D005457 9.6e-26 120.2 89 65.2
SGA_v2.0_scaffold16G07733 Striga asiatica HOM05D004389 ORTHO05D005457 1.3e-25 119.8 86 68.6
BcaC09g50404 Brassica carinata HOM05D004389 ORTHO05D005457 1.6e-25 119.4 90 68.9
C01p25870 Brassica napus HOM05D004389 ORTHO05D005457 1.6e-25 119.4 90 68.9
BolC1t02532H Brassica oleracea HOM05D004389 ORTHO05D005457 1.6e-25 119.4 90 68.9
Lj1g0012007 Lotus japonicus HOM05D004389 ORTHO05D005457 2.1e-25 119.0 92 65.2
Aa31sc17G40 Aethionema arabicum HOM05D004389 ORTHO05D005457 2.8e-25 118.6 94 63.8
AT4G16710 Arabidopsis thaliana HOM05D004389 ORTHO05D005457 2.8e-25 118.6 90 64.4
BraA01t01985Z Brassica rapa HOM05D004389 ORTHO05D005457 2.8e-25 118.6 90 67.8
Sp7g15350 Schrenkiella parvula HOM05D004389 ORTHO05D005457 2.8e-25 118.6 94 61.7
CARHR223240 Cardamine hirsuta HOM05D004389 ORTHO05D005457 3.7e-25 118.2 82 70.7
EL10Ac4g09330 Beta vulgaris HOM05D004389 ORTHO05D005457 4.8e-25 117.9 89 65.2
Thhalv10026361m.g Eutrema salsugineum HOM05D004389 ORTHO05D005457 6.2e-25 117.5 94 61.7
Carub.0007s2468 Capsella rubella HOM05D004389 ORTHO05D005457 1.1e-24 116.7 82 69.5
Glyma.06G240600 Glycine max HOM05D004389 ORTHO05D005457 1.1e-24 116.7 90 66.7
LjContig00312_ERROPOS870357g0027537 Lotus japonicus HOM05D004389 ORTHO05D005457 1.1e-24 116.7 92 64.1
Aa31sc17G90 Aethionema arabicum HOM05D004389 ORTHO05D005457 1.4e-24 116.3 94 62.8
FvH4_6g10990 Fragaria vesca HOM05D004389 ORTHO05D005457 1.4e-24 116.3 82 73.2
Glyma.05G086900 Glycine max HOM05D004389 ORTHO05D005457 1.4e-24 116.3 82 69.5
HanXRQChr04g0126711 Helianthus annuus HOM05D004389 ORTHO05D005457 1.4e-24 116.3 85 69.4
TWI53G0891 Tripterygium wilfordii HOM05D004389 ORTHO05D005457 1.4e-24 116.3 88 65.9
Medtr3g096610 Medicago truncatula HOM05D004389 ORTHO05D005457 1.8e-24 115.9 87 66.7
AL7G38020 Arabidopsis lyrata HOM05D004389 ORTHO05D005457 2.4e-24 115.5 89 62.9
BcaNung00158 Brassica carinata HOM05D004389 ORTHO05D005457 2.4e-24 115.5 93 64.5
CsaV3_1G039140 Cucumis sativus L. HOM05D004389 ORTHO05D005457 3.1e-24 115.2 94 64.9
ClCG03G016830 Citrullus lanatus HOM05D004389 ORTHO05D005457 5.3e-24 114.4 82 70.7
BcaB03g14176 Brassica carinata HOM05D004389 ORTHO05D005457 9.0e-24 113.6 93 64.5
unitig_747.g21568 Utricularia gibba HOM05D004389 ORTHO05D005457 9.0e-24 113.6 93 61.3
MELO3C015339.2 Cucumis melo HOM05D004389 ORTHO05D005457 1.2e-23 113.2 94 63.8
TPR.G30972 Trifolium pratense HOM05D004389 ORTHO05D005457 1.2e-23 113.2 87 64.4
Phvul.007G101500 Phaseolus vulgaris HOM05D004389 ORTHO05D005457 2.0e-23 112.5 90 65.6
AUR62000567 Chenopodium quinoa HOM05D004389 ORTHO05D005457 3.4e-23 111.7 80 67.5
SGA_v2.0_scaffold11G05813 Striga asiatica HOM05D004389 ORTHO05D005457 4.5e-23 111.3 87 65.5
Lalb_Chr05g0219701 Lupinus albus HOM05D004389 ORTHO05D005457 1.0e-22 110.2 90 60.0
SEGI_15909 Sequoiadendron giganteum HOM05D004389 ORTHO05D005457 1.7e-22 109.4 90 62.2
Sed0018697 Sechium edule HOM05D004389 ORTHO05D005457 2.2e-22 109.0 94 61.7
QL07p009462 Quercus lobata HOM05D004389 ORTHO05D005457 2.5e-21 105.5 79 64.6
HPP92_010418 Vanilla planifolia HOM05D004389 ORTHO05D005457 4.2e-21 104.8 85 62.4
Zm00001eb264580 Zea mays HOM05D004389 ORTHO05D005457 7.2e-21 104.0 87 59.8
Zm00001eb272600 Zea mays HOM05D004389 ORTHO05D005457 3.5e-20 101.7 85 60.0
Lsat_1_v5_gn_7_96081 Lactuca sativa HOM05D004389 ORTHO05D005457 1.3e-19 99.8 94 56.4
Zm00001eb380920 Zea mays HOM05D004389 ORTHO05D005457 6.7e-19 97.4 85 57.6
Peaxi162Scf00523g00530 Petunia axillaris HOM05D004389 ORTHO05D005457 1.9e-18 95.9 88 60.2
Rhsim05G0010600 Rhododendron simsii HOM05D004389 ORTHO05D005457 3.3e-18 95.1 127 47.2
RcHm_v2.0_Chr7g0218901 Rosa chinensis HOM05D004389 ORTHO05D005457 2.4e-16 89.0 61 68.9
Psat0s2070g0160 Pisum sativum HOM05D004389 ORTHO05D005457 5.3e-16 87.8 64 68.8
Psat0s1802g0120 Pisum sativum HOM05D004389 ORTHO05D005457 1.5e-15 86.3 64 67.2
Pp3c11_4930 Physcomitrium patens HOM05D004389 ORTHO05D005457 3.2e-13 78.6 85 49.4
vmacro15154 Vaccinium macrocarpon HOM05D004389 ORTHO05D022937 5.5e-13 77.8 51 74.5
AagrBONN_evm.TU.Sc2ySwM_117.3666 Anthoceros agrestis HOM05D004389 ORTHO05D005457 7.2e-13 77.4 83 45.8
Mapoly0013s0083 Marchantia polymorpha HOM05D004389 ORTHO05D005457 7.2e-13 77.4 86 43.0
PRCOL_00003734 Prasinoderma coloniale HOM05D004389 ORTHO05D005457 9.4e-13 77.0 87 48.3
AagrBONN_evm.TU.Sc2ySwM_344.4143 Anthoceros agrestis HOM05D007251 ORTHO05D009266 2.1e-12 75.9 83 44.6
SMO171G0140 Selaginella moellendorffii HOM05D004389 ORTHO05D005457 2.1e-12 75.9 84 45.2
vmacro15018 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 6.1e-12 74.3 66 60.6
vmacro22564 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 2.3e-11 72.4 43 76.7
SHI18161 Sapria himalayana HOM05D004389 ORTHO05D005457 6.7e-11 70.9 49 63.3
Cre13.g585850 Chlamydomonas reinhardtii HOM05D004389 ORTHO05D005457 8.8e-11 70.5 88 42.0
CBR_g24390 Chara braunii HOM05D004389 ORTHO05D005457 1.3e-09 66.6 54 57.4
QL07p009230 Quercus lobata HOM05D004389 ORTHO05D005457 1.3e-09 66.6 47 68.1
Medtr6g452950 Medicago truncatula HOM05D029366 ORTHO05D022937 2.2e-09 65.9 42 69.0
HPP92_010328 Vanilla planifolia HOM05D004389 ORTHO05D022937 2.8e-09 65.5 46 63.0
vmacro22211 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 3.7e-09 65.1 76 56.6
MCO09G816 Micromonas commoda HOM05D004389 ORTHO05D005457 1.1e-08 63.5 83 44.6
Peaxi162Scf02135g00022 Petunia axillaris HOM05D004389 ORTHO05D005457 4.5e-07 58.2 79 46.8
CDE04G0800 Ceratophyllum demersum HOM05D000328 ORTHO05D000191 5.9e-07 57.8 46 69.6
vmacro17239 Vaccinium macrocarpon HOM05D040504 ORTHO05D426804 5.0e-06 54.7 56 51.8


User provided reference genes

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