Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G02237 Aquilegia oxysepala HOM05D008093 ORTHO05D009840 5.6e-50 200.7 103 100.0
QL06p028766 Quercus lobata HOM05D008093 ORTHO05D009840 6.9e-16 87.4 102 51.0
CiPaw.04G083000 Carya illinoinensis HOM05D008093 ORTHO05D009840 6.4e-14 80.9 104 50.0
Potri.005G058800 Populus trichocarpa HOM05D008093 ORTHO05D009840 1.9e-13 79.3 99 49.5
Dinv24346 Davidia involucrata HOM05D008093 ORTHO05D009840 2.4e-13 79.0 103 48.5
Duzib264G0739 Durio zibethinus HOM05D008093 ORTHO05D009840 3.2e-13 78.6 104 46.2
ClCG02G000540 Citrullus lanatus HOM05D008093 ORTHO05D009840 4.2e-13 78.2 96 50.0
Manes.12G154600 Manihot esculenta HOM05D008093 ORTHO05D009840 5.4e-13 77.8 98 50.0
CiPaw.04G083200 Carya illinoinensis HOM05D008093 ORTHO05D009840 9.3e-13 77.0 99 49.5
MD02G1150700 Malus domestica HOM05D008093 ORTHO05D009840 1.6e-12 76.3 100 46.0
Peaxi162Scf00589g00323 Petunia axillaris HOM05D008093 ORTHO05D009840 2.1e-12 75.9 98 46.9
Nn5g28574 Nelumbo nucifera HOM05D008093 ORTHO05D009840 3.5e-12 75.1 97 45.4
QL06p028768 Quercus lobata HOM05D008093 ORTHO05D009840 3.5e-12 75.1 56 66.1
COL.COLO4_35729 Corchorus olitorius HOM05D008093 ORTHO05D009840 6.0e-12 74.3 102 48.0
Gohir.A05G385600 Gossypium hirsutum HOM05D008093 ORTHO05D009840 6.0e-12 74.3 99 48.5
Nitab4.5_0000856g0010 Nicotiana tabacum HOM05D008093 ORTHO05D009840 6.0e-12 74.3 97 47.4
Nitab4.5_0002667g0080 Nicotiana tabacum HOM05D008093 ORTHO05D009840 6.0e-12 74.3 97 47.4
EL10Ac4g09593 Beta vulgaris HOM05D008093 ORTHO05D009840 1.0e-11 73.6 103 43.7
MELO3C023245.2 Cucumis melo HOM05D008093 ORTHO05D009840 1.0e-11 73.6 98 49.0
MBI03_g00424_MAGBIO Magnolia biondii HOM05D008093 ORTHO05D009840 1.0e-11 73.6 107 48.6
Oeu042288.1 Olea europaea HOM05D008093 ORTHO05D009840 1.0e-11 73.6 102 44.1
Sed0027082 Sechium edule HOM05D008093 ORTHO05D009840 1.0e-11 73.6 100 47.0
Eucgr.L03270 Eucalyptus grandis HOM05D008093 ORTHO05D009840 1.3e-11 73.2 99 48.5
Gohir.D04G022800 Gossypium hirsutum HOM05D008093 ORTHO05D009840 2.3e-11 72.4 52 67.3
Ciclev10002949m.g Citrus clementina HOM05D008093 ORTHO05D009840 3.0e-11 72.0 105 45.7
Oeu033661.1 Olea europaea HOM05D008093 ORTHO05D009840 3.0e-11 72.0 101 45.5
CsaV3_2G018270 Cucumis sativus L. HOM05D008093 ORTHO05D009840 3.9e-11 71.6 98 48.0
Thhalv10026675m.g Eutrema salsugineum HOM05D010996 ORTHO05D009840 8.7e-11 70.5 95 45.3
Sc09g0002370 Simmondsia chinensis HOM05D008093 ORTHO05D009840 8.7e-11 70.5 103 43.7
Cfa002886 Carpinus fangiana HOM05D008093 ORTHO05D009840 1.1e-10 70.1 95 46.3
Gorai.012G034100 Gossypium raimondii HOM05D008093 ORTHO05D009840 1.1e-10 70.1 52 65.4
Hma1.2p1_0476F.1_g160900 Hydrangea macrophylla HOM05D008093 ORTHO05D009840 1.1e-10 70.1 95 48.4
ATR1136G205 Amborella trichopoda HOM05D008093 ORTHO05D009840 1.5e-10 69.7 93 47.3
AUR62006838 Chenopodium quinoa HOM05D008093 ORTHO05D009840 1.5e-10 69.7 96 47.9
MD15G1265300 Malus domestica HOM05D008093 ORTHO05D009840 1.5e-10 69.7 100 46.0
Nitab4.5_0013695g0010 Nicotiana tabacum HOM05D008093 ORTHO05D009840 1.5e-10 69.7 97 43.3
Potri.007G109200 Populus trichocarpa HOM05D008093 ORTHO05D009840 1.5e-10 69.7 102 47.1
Thecc.01G130900 Theobroma cacao HOM05D008093 ORTHO05D009840 2.5e-10 68.9 103 40.8
arahy.Tifrunner.gnm1.ann1.IYM9ZI Arachis hypogaea HOM05D008093 ORTHO05D009840 3.3e-10 68.6 97 44.3
Psat7g045640 Pisum sativum HOM05D008093 ORTHO05D009840 3.3e-10 68.6 95 44.2
PGSC0003DMG400028663 Solanum tuberosum HOM05D008093 ORTHO05D009840 3.3e-10 68.6 97 42.3
Glyma.08G156600 Glycine max HOM05D008093 ORTHO05D009840 4.3e-10 68.2 104 41.3
C01p05220 Brassica napus HOM05D010996 ORTHO05D009840 5.6e-10 67.8 99 45.5
BolC1t00501H Brassica oleracea HOM05D010996 ORTHO05D009840 5.6e-10 67.8 99 45.5
Ca_17640_v3 Cicer arietinum L. HOM05D008093 ORTHO05D009840 5.6e-10 67.8 95 45.3
FAN28G2095 Fragaria x ananassa HOM05D008093 ORTHO05D009840 5.6e-10 67.8 95 46.3
Lj4g0016515 Lotus japonicus HOM05D008093 ORTHO05D009840 5.6e-10 67.8 113 42.5
Actinidia06628 Actinidia chinensis HOM05D008093 ORTHO05D009840 7.3e-10 67.4 97 41.2
RcHm_v2.0_Chr2g0101941 Rosa chinensis HOM05D008093 ORTHO05D009840 7.3e-10 67.4 98 43.9
Cc07_g18370 Coffea canephora HOM05D008093 ORTHO05D009840 9.6e-10 67.0 102 41.2
Lalb_Chr12g0203141 Lupinus albus HOM05D008093 ORTHO05D009840 1.3e-09 66.6 102 43.1
FAN19G1201 Fragaria x ananassa HOM05D008093 ORTHO05D009840 1.6e-09 66.2 69 53.6
Sopen11g001870 Solanum pennellii HOM05D008093 ORTHO05D009840 2.1e-09 65.9 97 41.2
BcaC09g52160 Brassica carinata HOM05D010996 ORTHO05D009840 2.8e-09 65.5 99 43.4
FvH4_1g13550 Fragaria vesca HOM05D008093 ORTHO05D009840 4.8e-09 64.7 95 45.3
FAN26G1298 Fragaria x ananassa HOM05D008093 ORTHO05D009840 4.8e-09 64.7 95 45.3
Medtr8g093620 Medicago truncatula HOM05D008093 ORTHO05D009840 4.8e-09 64.7 95 44.2
Lalb_Chr07g0184461 Lupinus albus HOM05D008093 ORTHO05D009840 6.2e-09 64.3 96 41.7
Solyc11g005930.2 Solanum lycopersicum HOM05D008093 ORTHO05D009840 8.1e-09 63.9 97 40.2
FAN23G2512 Fragaria x ananassa HOM05D008093 ORTHO05D009840 1.4e-08 63.2 59 55.9
Glyma.05G191500 Glycine max HOM05D008093 ORTHO05D009840 1.4e-08 63.2 99 42.4
Zm00001eb138530 Zea mays HOM05D008093 ORTHO05D009840 1.8e-08 62.8 47 66.0
Prupe.7G152300 Prunus persica HOM05D008093 ORTHO05D009840 4.0e-08 61.6 112 38.4
Nitab4.5_0002667g0090 Nicotiana tabacum HOM05D008093 ORTHO05D009840 6.9e-08 60.8 64 51.6
Os12g0187800 Oryza sativa ssp. japonica HOM05D008093 ORTHO05D009840 9.0e-08 60.5 46 63.0
A01p04810 Brassica napus HOM05D010996 ORTHO05D009840 1.2e-07 60.1 98 40.8
A03p62020 Brassica napus HOM05D010996 ORTHO05D009840 1.2e-07 60.1 95 42.1
C07p59670 Brassica napus HOM05D010996 ORTHO05D009840 1.2e-07 60.1 95 42.1
BraA01t00464Z Brassica rapa HOM05D010996 ORTHO05D009840 1.2e-07 60.1 98 40.8
BraA03t15242Z Brassica rapa HOM05D010996 ORTHO05D009840 1.2e-07 60.1 95 42.1
Sabra07G0089300 Salix brachista HOM05D008093 ORTHO05D009840 1.2e-07 60.1 44 65.9
Zm00001eb409100 Zea mays HOM05D008093 ORTHO05D009840 1.2e-07 60.1 61 52.5
Phvul.002G271900 Phaseolus vulgaris HOM05D008093 ORTHO05D009840 1.5e-07 59.7 101 41.6
VMungo0251G0054 Vigna mungo HOM05D008093 ORTHO05D009840 2.0e-07 59.3 99 42.4
MBI06_g29669_MAGBIO Magnolia biondii HOM05D008093 ORTHO05D009840 3.4e-07 58.5 73 45.2
THA.LOC104819498 Tarenaya hassleriana HOM05D010996 ORTHO05D009840 7.6e-07 57.4 96 39.6
BcaNung05339 Brassica carinata HOM05D000119 ORTHO05D000054 9.9e-07 57.0 56 53.6
AT4G33467 Arabidopsis thaliana HOM05D010996 ORTHO05D009840 1.3e-06 56.6 99 40.4
CARHR241540 Cardamine hirsuta HOM05D010996 ORTHO05D009840 1.3e-06 56.6 97 37.1
BcaNung02175 Brassica carinata HOM05D010996 ORTHO05D009840 2.9e-06 55.5 93 39.8
BolC7t46412H Brassica oleracea HOM05D010996 ORTHO05D009840 2.9e-06 55.5 93 39.8
arahy.Tifrunner.gnm1.ann1.Y5JHNR Arachis hypogaea HOM05D008093 ORTHO05D009840 3.8e-06 55.1 46 58.7


User provided reference genes

Program Settings