Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G02118 Aquilegia oxysepala HOM05D003896 ORTHO05D004517 4.0e-36 154.1 69 100.0
Aqoxy2G00844 Aquilegia oxysepala HOM05D003896 ORTHO05D004517 5.1e-31 137.1 68 89.7
Actinidia00232 Actinidia chinensis HOM05D003896 ORTHO05D004517 1.9e-30 135.2 68 88.2
Prupe.1G560700 Prunus persica HOM05D003896 ORTHO05D004517 1.9e-30 135.2 68 89.7
RcHm_v2.0_Chr7g0225181 Rosa chinensis HOM05D003896 ORTHO05D004517 1.9e-30 135.2 68 89.7
PGR142G1796 Punica granatum HOM05D003896 ORTHO05D004517 2.5e-30 134.8 68 89.7
CDE04G2322 Ceratophyllum demersum HOM05D003896 ORTHO05D004517 4.3e-30 134.0 68 88.2
Manes.02G178600 Manihot esculenta HOM05D003896 ORTHO05D004517 4.3e-30 134.0 68 86.8
Actinidia38960 Actinidia chinensis HOM05D003896 ORTHO05D004517 5.6e-30 133.7 68 85.3
MBI13_g20498_MAGBIO Magnolia biondii HOM05D003896 ORTHO05D004517 5.6e-30 133.7 68 88.2
Atru.chr6.939 Acer truncatum HOM05D003896 ORTHO05D004517 7.3e-30 133.3 68 85.3
FAN13G2961 Fragaria x ananassa HOM05D003896 ORTHO05D004517 7.3e-30 133.3 68 88.2
MBI13_g29655_MAGBIO Magnolia biondii HOM05D003896 ORTHO05D004517 7.3e-30 133.3 67 88.1
Haze_10788 Corylus avellana HOM05D003896 ORTHO05D004517 9.5e-30 132.9 68 86.8
Aa31LG1G40 Aethionema arabicum HOM05D003702 ORTHO05D004653 1.2e-29 132.5 68 86.8
arahy.Tifrunner.gnm1.ann1.D7TB4J Arachis hypogaea HOM05D003896 ORTHO05D004517 1.2e-29 132.5 68 83.8
arahy.Tifrunner.gnm1.ann1.EN81KK Arachis hypogaea HOM05D003896 ORTHO05D004517 1.2e-29 132.5 68 83.8
Eucgr.I02701 Eucalyptus grandis HOM05D003896 ORTHO05D004517 1.2e-29 132.5 68 86.8
Nn5g28709 Nelumbo nucifera HOM05D003896 ORTHO05D004517 1.2e-29 132.5 68 86.8
Potri.002G069200 Populus trichocarpa HOM05D003896 ORTHO05D004517 1.2e-29 132.5 68 86.8
CANSAT11G1560 Cannabis sativa HOM05D003896 ORTHO05D004517 1.6e-29 132.1 68 86.8
CiPaw.05G040300 Carya illinoinensis HOM05D003896 ORTHO05D004517 1.6e-29 132.1 68 85.3
BcaC05g25441 Brassica carinata HOM05D003896 ORTHO05D004517 2.8e-29 131.3 68 85.3
BolC5t30061H Brassica oleracea HOM05D003896 ORTHO05D004517 2.8e-29 131.3 68 85.3
MELO3C019495.2 Cucumis melo HOM05D003896 ORTHO05D004517 2.8e-29 131.3 68 83.8
TWI14G0008 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 2.8e-29 131.3 68 85.3
FvH4_5g30500 Fragaria vesca HOM05D003896 ORTHO05D004517 3.6e-29 131.0 68 86.8
FAN04G1676 Fragaria x ananassa HOM05D003896 ORTHO05D004517 3.6e-29 131.0 68 86.8
FAN18G4256 Fragaria x ananassa HOM05D003896 ORTHO05D004517 3.6e-29 131.0 68 86.8
AT1G15120 Arabidopsis thaliana HOM05D003896 ORTHO05D004517 4.7e-29 130.6 68 83.8
AL1G27180 Arabidopsis lyrata HOM05D003896 ORTHO05D004517 6.2e-29 130.2 68 83.8
CARHR015640 Cardamine hirsuta HOM05D003896 ORTHO05D004517 6.2e-29 130.2 68 83.8
Dinv19332 Davidia involucrata HOM05D003896 ORTHO05D004517 6.2e-29 130.2 68 83.8
Potri.002G069301 Populus trichocarpa HOM05D003896 ORTHO05D004517 6.2e-29 130.2 68 85.3
Sp1g13460 Schrenkiella parvula HOM05D003896 ORTHO05D004517 6.2e-29 130.2 68 83.8
Manes.18G091100 Manihot esculenta HOM05D003896 ORTHO05D004517 8.1e-29 129.8 68 83.8
Glyma.08G181800 Glycine max HOM05D003896 ORTHO05D004517 1.1e-28 129.4 68 83.8
Lj6g0000311 Lotus japonicus HOM05D003896 ORTHO05D004517 1.1e-28 129.4 68 85.3
ATR0772G203 Amborella trichopoda HOM05D003896 ORTHO05D004517 1.4e-28 129.0 68 85.3
CsaV3_3G018780 Cucumis sativus L. HOM05D003896 ORTHO05D004517 1.4e-28 129.0 68 82.4
BcaB03g14560 Brassica carinata HOM05D003896 ORTHO05D004517 1.8e-28 128.6 68 82.4
BcaC07g38769 Brassica carinata HOM05D003896 ORTHO05D004517 1.8e-28 128.6 68 82.4
A08p31730 Brassica napus HOM05D003896 ORTHO05D004517 1.8e-28 128.6 68 82.4
C08p17020 Brassica napus HOM05D003896 ORTHO05D004517 1.8e-28 128.6 68 82.4
BolC8t49327H Brassica oleracea HOM05D003896 ORTHO05D004517 1.8e-28 128.6 68 82.4
BraA08t35095Z Brassica rapa HOM05D003896 ORTHO05D004517 1.8e-28 128.6 68 82.4
Gohir.D01G001100 Gossypium hirsutum HOM05D003896 ORTHO05D004517 1.8e-28 128.6 68 83.8
arahy.Tifrunner.gnm1.ann1.Q4HF2T Arachis hypogaea HOM05D003896 ORTHO05D004517 2.3e-28 128.3 68 83.8
ECA236G2466 Erigeron canadensis HOM05D003896 ORTHO05D004517 2.3e-28 128.3 68 82.4
Glyma.15G050500 Glycine max HOM05D003896 ORTHO05D004517 2.3e-28 128.3 68 82.4
Sed0011383 Sechium edule HOM05D003896 ORTHO05D004517 2.3e-28 128.3 68 82.4
Sed0019459 Sechium edule HOM05D003896 ORTHO05D004517 2.3e-28 128.3 68 82.4
THA.LOC109116537 Tarenaya hassleriana HOM05D003896 ORTHO05D004517 2.3e-28 128.3 68 83.8
TWI23G0468 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 2.3e-28 128.3 68 80.9
HanXRQChr11g0337591 Helianthus annuus HOM05D003896 ORTHO05D004517 3.1e-28 127.9 68 82.4
MD08G1223400 Malus domestica HOM05D003896 ORTHO05D004517 3.1e-28 127.9 68 82.4
Phvul.006G209400 Phaseolus vulgaris HOM05D003896 ORTHO05D004517 3.1e-28 127.9 68 82.4
TAR628G1659 Trochodendron aralioides HOM05D003896 ORTHO05D004517 3.1e-28 127.9 68 83.8
Aa31LG2G8780 Aethionema arabicum HOM05D003896 ORTHO05D004517 4.0e-28 127.5 68 83.8
Thecc.02G044000 Theobroma cacao HOM05D003896 ORTHO05D004517 4.0e-28 127.5 68 82.4
arahy.Tifrunner.gnm1.ann1.MYBE61 Arachis hypogaea HOM05D003896 ORTHO05D004517 5.2e-28 127.1 68 82.4
Carub.0001s1488 Capsella rubella HOM05D003896 ORTHO05D004517 5.2e-28 127.1 68 80.9
Medtr2g008070 Medicago truncatula HOM05D003896 ORTHO05D004517 5.2e-28 127.1 68 82.4
QL11p018723 Quercus lobata HOM05D003896 ORTHO05D004517 5.2e-28 127.1 67 82.1
Sc02g0004100 Simmondsia chinensis HOM05D003896 ORTHO05D004517 5.2e-28 127.1 68 85.3
Dinv24242 Davidia involucrata HOM05D003896 ORTHO05D004517 6.8e-28 126.7 68 82.4
Nn1g06112 Nelumbo nucifera HOM05D003896 ORTHO05D004517 6.8e-28 126.7 68 83.8
VMungo0540G0553 Vigna mungo HOM05D000025 ORTHO05D000136 8.9e-28 126.3 68 82.4
BcaB03g13075 Brassica carinata HOM05D003896 ORTHO05D004517 1.5e-27 125.6 68 80.9
CSS0003096 Camellia sinensis var. sinensis HOM05D003896 ORTHO05D004517 1.5e-27 125.6 68 83.8
CSS0009103 Camellia sinensis var. sinensis HOM05D003896 ORTHO05D004517 1.5e-27 125.6 68 83.8
Cpa.g.sc2.46 Carica papaya HOM05D003896 ORTHO05D004517 1.5e-27 125.6 68 80.9
BolC8t52063H Brassica oleracea HOM05D003896 ORTHO05D004517 2.0e-27 125.2 68 79.4
CiPaw.06G150500 Carya illinoinensis HOM05D003896 ORTHO05D004517 2.0e-27 125.2 68 80.9
Duzib052G0314 Durio zibethinus HOM05D003896 ORTHO05D004517 2.0e-27 125.2 68 77.9
HanXRQChr11g0337581 Helianthus annuus HOM05D003896 ORTHO05D004517 2.0e-27 125.2 68 80.9
Thhalv10001040m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 2.6e-27 124.8 68 83.8
Os11g0162200 Oryza sativa ssp. japonica HOM05D003896 ORTHO05D004517 2.6e-27 124.8 68 77.9
Dinv05188 Davidia involucrata HOM05D003896 ORTHO05D004517 3.4e-27 124.4 68 80.9
Psat1g218920 Pisum sativum HOM05D003896 ORTHO05D004517 4.4e-27 124.0 68 80.9
A02p31670 Brassica napus HOM05D003896 ORTHO05D004517 5.8e-27 123.6 68 80.9
BolC2t10995H Brassica oleracea HOM05D003896 ORTHO05D004517 5.8e-27 123.6 68 80.9
BraA02t08170Z Brassica rapa HOM05D003896 ORTHO05D004517 5.8e-27 123.6 68 80.9
C02p49010 Brassica napus HOM05D003896 ORTHO05D004517 7.6e-27 123.2 67 80.6
AUR62035137 Chenopodium quinoa HOM05D003896 ORTHO05D004517 7.6e-27 123.2 69 79.7
AUR62042907 Chenopodium quinoa HOM05D003896 ORTHO05D004517 7.6e-27 123.2 69 79.7
Gohir.A01G001400 Gossypium hirsutum HOM05D003896 ORTHO05D004517 7.6e-27 123.2 68 79.4
Gohir.A12G033300 Gossypium hirsutum HOM05D003896 ORTHO05D004517 7.6e-27 123.2 68 79.4
Gohir.D12G039500 Gossypium hirsutum HOM05D003896 ORTHO05D004517 7.6e-27 123.2 68 79.4
EL10Ac1g01528 Beta vulgaris HOM05D003896 ORTHO05D004517 9.9e-27 122.9 69 78.3
Dinv01060 Davidia involucrata HOM05D003896 ORTHO05D004517 9.9e-27 122.9 68 82.4
FAN17G0735 Fragaria x ananassa HOM05D003896 ORTHO05D004517 9.9e-27 122.9 68 79.4
TAR381G0439 Trochodendron aralioides HOM05D003896 ORTHO05D004517 1.3e-26 122.5 59 89.8
GSVIVG01034509001 Vitis vinifera HOM05D003896 ORTHO05D004517 1.3e-26 122.5 68 76.5
CDE04G0116 Ceratophyllum demersum HOM05D003896 ORTHO05D004517 2.2e-26 121.7 68 80.9
Duzib132G0061 Durio zibethinus HOM05D003896 ORTHO05D004517 2.9e-26 121.3 68 77.9
FvH4_7g02900 Fragaria vesca HOM05D003896 ORTHO05D004517 2.9e-26 121.3 69 81.2
vmacro22914 Vaccinium macrocarpon HOM05D003896 ORTHO05D004517 2.9e-26 121.3 68 77.9
Duzib248G1617 Durio zibethinus HOM05D003896 ORTHO05D004517 4.9e-26 120.6 68 75.0
TPR.G19749 Trifolium pratense HOM05D003896 ORTHO05D004517 4.9e-26 120.6 66 77.3
Atru.chr13.2169 Acer truncatum HOM05D003896 ORTHO05D004517 6.4e-26 120.2 68 77.9
Potri.005G190901 Populus trichocarpa HOM05D003896 ORTHO05D004517 6.4e-26 120.2 68 77.9
FAN12G2386 Fragaria x ananassa HOM05D003896 ORTHO05D004517 8.4e-26 119.8 68 77.9
Lsat_1_v5_gn_9_116680 Lactuca sativa HOM05D003896 ORTHO05D004517 8.4e-26 119.8 67 74.6
THA.LOC109117087 Tarenaya hassleriana HOM05D003896 ORTHO05D004517 8.4e-26 119.8 68 79.4
FAN03G2302 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.1e-25 119.4 68 79.4
MD05G1023300 Malus domestica HOM05D003896 ORTHO05D004517 1.1e-25 119.4 68 77.9
Peaxi162Scf00067g02527 Petunia axillaris HOM05D003896 ORTHO05D004517 1.1e-25 119.4 68 77.9
PGSC0003DMG400011391 Solanum tuberosum HOM05D003896 ORTHO05D004517 1.9e-25 118.6 68 76.5
TAR625G1245 Trochodendron aralioides HOM05D003896 ORTHO05D004517 1.9e-25 118.6 58 87.9
FAN06G4594 Fragaria x ananassa HOM05D003896 ORTHO05D004517 2.4e-25 118.2 69 79.7
Nitab4.5_0000078g0350 Nicotiana tabacum HOM05D003896 ORTHO05D004517 2.4e-25 118.2 68 76.5
Nitab4.5_0004027g0040 Nicotiana tabacum HOM05D003896 ORTHO05D004517 2.4e-25 118.2 68 76.5
ClCG05G009840 Citrullus lanatus HOM05D003896 ORTHO05D004517 3.2e-25 117.9 92 62.0
ECA240G1941 Erigeron canadensis HOM05D003620 ORTHO05D004261 3.2e-25 117.9 66 74.2
Solyc09g150155.1 Solanum lycopersicum HOM05D003896 ORTHO05D004517 3.2e-25 117.9 68 76.5
Sabra05G0145900 Salix brachista HOM05D003896 ORTHO05D004517 4.1e-25 117.5 59 84.7
Solyc09g074870.4 Solanum lycopersicum HOM05D003896 ORTHO05D004517 4.1e-25 117.5 68 77.9
Sopen09g029690 Solanum pennellii HOM05D003896 ORTHO05D004517 4.1e-25 117.5 68 77.9
A06p11120 Brassica napus HOM05D003896 ORTHO05D004517 7.1e-25 116.7 59 84.7
CAN.G339.37 Capsicum annuum HOM05D003896 ORTHO05D004517 7.1e-25 116.7 68 75.0
PSO210G7830 Papaver somniferum HOM05D003896 ORTHO05D004517 7.1e-25 116.7 68 76.5
PSO238G0030 Papaver somniferum HOM05D003896 ORTHO05D004517 7.1e-25 116.7 68 76.5
AagrBONN_evm.TU.Sc2ySwM_228.2620 Anthoceros agrestis HOM05D003896 ORTHO05D004517 9.2e-25 116.3 68 75.0
Sabra02G0054300 Salix brachista HOM05D004716 ORTHO05D005646 9.2e-25 116.3 59 84.7
Ciclev10002923m.g Citrus clementina HOM05D003896 ORTHO05D004517 1.2e-24 115.9 68 76.5
Sc26g0002640 Simmondsia chinensis HOM05D003896 ORTHO05D004517 1.2e-24 115.9 68 77.9
C05p13240 Brassica napus HOM05D003896 ORTHO05D004517 1.6e-24 115.5 59 83.1
BraA06t24292Z Brassica rapa HOM05D003896 ORTHO05D004517 1.6e-24 115.5 59 83.1
Manes.18G073709 Manihot esculenta HOM05D003896 ORTHO05D004517 1.6e-24 115.5 68 77.9
Manes.18G090900 Manihot esculenta HOM05D003896 ORTHO05D004517 1.6e-24 115.5 68 77.9
CARHR143640 Cardamine hirsuta HOM05D003896 ORTHO05D004517 2.1e-24 115.2 68 75.0
BcaB02g06577 Brassica carinata HOM05D003896 ORTHO05D004517 2.7e-24 114.8 63 81.0
Gorai.002G001600 Gossypium raimondii HOM05D003896 ORTHO05D004517 2.7e-24 114.8 59 83.1
Hma1.2p1_1800F.1_g302950 Hydrangea macrophylla HOM05D003896 ORTHO05D004517 2.7e-24 114.8 67 76.1
A09p61560 Brassica napus HOM05D003896 ORTHO05D004517 4.6e-24 114.0 95 58.9
BraA09t41529Z Brassica rapa HOM05D003896 ORTHO05D004517 4.6e-24 114.0 95 58.9
CBR_g10999 Chara braunii HOM05D003896 ORTHO05D004517 6.0e-24 113.6 67 73.1
TWI34G0745 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 6.0e-24 113.6 68 76.5
Gorai.008G041200 Gossypium raimondii HOM05D003896 ORTHO05D004517 7.8e-24 113.2 64 73.4
FAN08G0225 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.0e-23 112.8 56 87.5
Thhalv10009667m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 1.3e-23 112.5 59 79.7
Mapoly0020s0072 Marchantia polymorpha HOM05D003896 ORTHO05D004517 2.3e-23 111.7 67 68.7
Oeu012724.1 Olea europaea HOM05D003896 ORTHO05D004517 3.0e-23 111.3 68 72.1
Migut.B00649 Erythranthe guttata HOM05D003896 ORTHO05D004517 3.9e-23 110.9 68 73.5
Prupe.8G028000 Prunus persica HOM05D003896 ORTHO05D004517 3.9e-23 110.9 68 75.0
C08p45150 Brassica napus HOM05D003896 ORTHO05D004517 5.1e-23 110.5 59 78.0
Thecc.08G150500 Theobroma cacao HOM05D003896 ORTHO05D004517 6.6e-23 110.2 68 70.6
Migut.N01017 Erythranthe guttata HOM05D003896 ORTHO05D004517 1.5e-22 109.0 68 69.1
Lsat_1_v5_gn_7_79760 Lactuca sativa HOM05D003896 ORTHO05D004517 1.9e-22 108.6 57 78.9
unitig_578.g15948 Utricularia gibba HOM05D003896 ORTHO05D004517 3.3e-22 107.8 68 70.6
Pp3c26_10210 Physcomitrium patens HOM05D003896 ORTHO05D004517 5.6e-22 107.1 64 71.9
Pp3c26_10390 Physcomitrium patens HOM05D003896 ORTHO05D004517 5.6e-22 107.1 64 71.9
AT2G01090 Arabidopsis thaliana HOM05D003896 ORTHO05D004517 1.2e-21 105.9 59 76.3
Peaxi162Scf00152g01234 Petunia axillaris HOM05D003896 ORTHO05D004517 1.6e-21 105.5 97 54.6
SalBow6G5306 Salvia bowleyana HOM05D003896 ORTHO05D004517 1.6e-21 105.5 67 67.2
FAN07G2777 Fragaria x ananassa HOM05D003896 ORTHO05D004517 2.8e-21 104.8 59 74.6
Nitab4.5_0005474g0030 Nicotiana tabacum HOM05D003896 ORTHO05D004517 1.1e-20 102.8 59 72.9
Duzib116G0919 Durio zibethinus HOM05D003896 ORTHO05D004517 2.4e-20 101.7 68 67.6
Zm00001eb202390 Zea mays HOM05D003896 ORTHO05D004517 4.0e-20 100.9 56 73.2
COL.COLO4_37834 Corchorus olitorius HOM05D004026 ORTHO05D004712 6.9e-20 100.1 69 66.7
CAN.G339.36 Capsicum annuum HOM05D000541 ORTHO05D000137 2.0e-19 98.6 59 72.9
CBR_g10998 Chara braunii HOM05D016306 ORTHO05D018315 2.0e-19 98.6 66 63.6
PRCOL_00005271 Prasinoderma coloniale HOM05D003896 ORTHO05D004517 4.4e-19 97.4 68 60.3
Pp3c19_20470 Physcomitrium patens HOM05D003896 ORTHO05D004517 1.3e-18 95.9 57 66.7
Zm00001eb139450 Zea mays HOM05D003896 ORTHO05D004517 1.3e-18 95.9 56 71.4
Gorai.013G108600 Gossypium raimondii HOM05D003896 ORTHO05D004517 3.8e-18 94.4 68 64.7
Gohir.A02G111100 Gossypium hirsutum HOM05D003896 ORTHO05D004517 4.9e-18 94.0 68 63.2
Gohir.D03G062900 Gossypium hirsutum HOM05D003896 ORTHO05D004517 1.1e-17 92.8 68 63.2
Nitab4.5_0013344g0010 Nicotiana tabacum HOM05D003896 ORTHO05D004517 2.4e-17 91.7 49 71.4
MCO16G078 Micromonas commoda HOM05D003896 ORTHO05D004517 5.4e-17 90.5 68 58.8
Duzib132G0328 Durio zibethinus HOM05D003896 ORTHO05D004517 7.1e-17 90.1 42 88.1
Atru.chr6.943 Acer truncatum HOM05D003896 ORTHO05D004517 2.7e-16 88.2 41 87.8
SMO117G0126 Selaginella moellendorffii HOM05D003896 ORTHO05D004517 1.7e-15 85.5 58 60.3
PGSC0003DMG400011392 Solanum tuberosum HOM05D003896 ORTHO05D004517 8.1e-13 76.6 59 61.0
Zm00001eb181710 Zea mays HOM05D003896 ORTHO05D004517 1.4e-12 75.9 68 55.9
Thhalv10028069m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 1.8e-12 75.5 43 79.1
Thhalv10029056m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 1.8e-12 75.5 43 79.1
Zm00001eb243140 Zea mays HOM05D003896 ORTHO05D004517 4.0e-12 74.3 68 55.9
Os02g0541700 Oryza sativa ssp. japonica HOM05D003896 ORTHO05D004517 7.6e-11 70.1 68 54.4
unitig_8.g2965 Utricularia gibba HOM05D003896 ORTHO05D004517 1.1e-09 66.2 34 70.6
FAN22G1408 Fragaria x ananassa HOM05D003896 ORTHO05D004517 2.4e-09 65.1 41 68.3
COL.COLO4_17923 Corchorus olitorius HOM05D003896 ORTHO05D004517 1.2e-08 62.8 35 77.1
arahy.Tifrunner.gnm1.ann1.13ME4F Arachis hypogaea HOM05D000724 ORTHO05D015426 1.1e-06 56.2 49 55.1


User provided reference genes

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