Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G01942 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 2.4e-168 595.5 315 100.0
Dinv22112 Davidia involucrata HOM05D003874 ORTHO05D004545 3.0e-46 189.9 323 40.2
TAR628G1590 Trochodendron aralioides HOM05D003874 ORTHO05D004545 3.0e-46 189.9 343 39.1
Rhsim12G0002900 Rhododendron simsii HOM05D003874 ORTHO05D004545 6.7e-46 188.7 353 40.8
Dinv37410 Davidia involucrata HOM05D003874 ORTHO05D004545 8.7e-46 188.3 322 40.7
CSS0025181 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 1.6e-44 184.1 331 39.9
TAR376G0450 Trochodendron aralioides HOM05D003874 ORTHO05D004545 2.2e-44 183.7 360 39.2
MD10G1004400 Malus domestica HOM05D003874 ORTHO05D004545 4.8e-44 182.6 347 39.5
vmacro00941 Vaccinium macrocarpon HOM05D003874 ORTHO05D004545 6.3e-44 182.2 345 40.6
CSS0009242 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 1.1e-43 181.4 320 39.1
CSS0015095 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 3.1e-43 179.9 320 38.8
Manes.02G201800 Manihot esculenta HOM05D003874 ORTHO05D004545 4.1e-43 179.5 333 40.5
Prupe.8G006800 Prunus persica HOM05D003874 ORTHO05D004545 2.0e-42 177.2 361 38.5
Sabra13G0085100 Salix brachista HOM05D003874 ORTHO05D004545 2.0e-42 177.2 350 38.9
CANSAT21G0097 Cannabis sativa HOM05D003874 ORTHO05D004545 5.9e-42 175.6 325 38.8
Cc10_g08580 Coffea canephora HOM05D003874 ORTHO05D004545 7.6e-42 175.3 345 37.4
Aqoxy6G00117 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 1.3e-41 174.5 324 38.0
Lj7A419T39 Lonicera japonica HOM05D003874 ORTHO05D004545 1.3e-41 174.5 333 39.9
CsaV3_5G039860 Cucumis sativus L. HOM05D003874 ORTHO05D004545 1.7e-41 174.1 355 38.3
MELO3C022165.2 Cucumis melo HOM05D003874 ORTHO05D004545 2.2e-41 173.7 352 37.2
Duzib268G0037 Durio zibethinus HOM05D003874 ORTHO05D004545 2.2e-41 173.7 365 39.2
Nn5g27385 Nelumbo nucifera HOM05D003874 ORTHO05D004545 3.8e-41 172.9 359 39.8
TWI18G0284 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 3.8e-41 172.9 150 60.7
COL.COLO4_25146 Corchorus olitorius HOM05D003874 ORTHO05D004545 5.0e-41 172.6 376 38.0
TWI75G0660 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 5.0e-41 172.6 131 66.4
FAN24G1984 Fragaria x ananassa HOM05D003874 ORTHO05D004545 6.5e-41 172.2 338 38.5
MD05G1003400 Malus domestica HOM05D003874 ORTHO05D004545 8.5e-41 171.8 345 36.2
QL09p001799 Quercus lobata HOM05D003874 ORTHO05D004545 8.5e-41 171.8 359 37.3
Cfa008075 Carpinus fangiana HOM05D003874 ORTHO05D004545 1.1e-40 171.4 344 37.5
FvH4_2g00770 Fragaria vesca HOM05D003874 ORTHO05D004545 1.1e-40 171.4 338 38.5
Gohir.A13G115500 Gossypium hirsutum HOM05D003874 ORTHO05D004545 1.4e-40 171.0 359 39.0
Actinidia29373 Actinidia chinensis HOM05D003874 ORTHO05D004545 1.9e-40 170.6 375 36.5
ClCG08G000760 Citrullus lanatus HOM05D003874 ORTHO05D004545 2.5e-40 170.2 349 36.7
Cpa.g.sc21.87 Carica papaya HOM05D003874 ORTHO05D004545 5.5e-40 169.1 371 36.7
FAN20G2080 Fragaria x ananassa HOM05D003874 ORTHO05D004545 5.5e-40 169.1 330 38.8
FAN27G1922 Fragaria x ananassa HOM05D003874 ORTHO05D004545 5.5e-40 169.1 330 38.5
Manes.18G116100 Manihot esculenta HOM05D003874 ORTHO05D004545 5.5e-40 169.1 356 36.0
GSVIVG01036285001 Vitis vinifera HOM05D003874 ORTHO05D004545 7.2e-40 168.7 133 63.9
Peaxi162Scf00078g00734 Petunia axillaris HOM05D003874 ORTHO05D004545 1.2e-39 167.9 338 38.5
RcHm_v2.0_Chr6g0251151 Rosa chinensis HOM05D003874 ORTHO05D004545 1.2e-39 167.9 334 37.4
Actinidia03528 Actinidia chinensis HOM05D003874 ORTHO05D004545 1.6e-39 167.5 375 35.7
Gorai.013G133000 Gossypium raimondii HOM05D003874 ORTHO05D004545 1.6e-39 167.5 359 38.4
Gohir.D13G118600 Gossypium hirsutum HOM05D003874 ORTHO05D004545 7.9e-39 165.2 359 38.2
Nitab4.5_0000283g0160 Nicotiana tabacum HOM05D003874 ORTHO05D004545 1.0e-38 164.9 108 67.6
PSO170G4959 Papaver somniferum HOM05D003874 ORTHO05D004545 1.0e-38 164.9 349 38.7
Nitab4.5_0000980g0270 Nicotiana tabacum HOM05D003874 ORTHO05D004545 1.4e-38 164.5 324 37.3
Potri.019G071300 Populus trichocarpa HOM05D003874 ORTHO05D004545 1.4e-38 164.5 348 33.9
MBI03_g29107_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 2.3e-38 163.7 377 37.4
PSO017G0683 Papaver somniferum HOM05D003874 ORTHO05D004545 2.3e-38 163.7 352 36.6
Duzib177G0949 Durio zibethinus HOM05D003874 ORTHO05D004545 3.0e-38 163.3 364 35.7
CDE08G0633 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 8.8e-38 161.8 355 35.8
Potri.013G099200 Populus trichocarpa HOM05D003874 ORTHO05D004545 8.8e-38 161.8 364 36.3
CDE02G0043 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 1.1e-37 161.4 337 35.9
SalBow7G3598 Salvia bowleyana HOM05D003874 ORTHO05D004545 5.7e-37 159.1 341 38.7
Nitab4.5_0000213g0070 Nicotiana tabacum HOM05D003874 ORTHO05D004545 1.7e-36 157.5 354 34.2
Thecc.08G178800 Theobroma cacao HOM05D003874 ORTHO05D004545 2.2e-36 157.1 358 36.3
Sed0026799 Sechium edule HOM05D003874 ORTHO05D004545 2.8e-36 156.8 345 36.5
Haze_13960 Corylus avellana HOM05D003874 ORTHO05D004545 3.7e-36 156.4 377 33.2
Lsat_1_v5_gn_9_75521 Lactuca sativa HOM05D003874 ORTHO05D004545 3.7e-36 156.4 322 36.0
Oeu028635.2 Olea europaea HOM05D003874 ORTHO05D004545 4.8e-36 156.0 353 36.3
MSTRG.24132 Avicennia marina HOM05D003874 ORTHO05D004545 6.3e-36 155.6 339 36.0
MELO3C012083.2 Cucumis melo HOM05D003874 ORTHO05D004545 6.3e-36 155.6 336 35.1
CiPaw.04G009100 Carya illinoinensis HOM05D003874 ORTHO05D004545 8.2e-36 155.2 363 35.0
ClCG05G024400 Citrullus lanatus HOM05D003874 ORTHO05D004545 8.2e-36 155.2 349 36.1
Nitab4.5_0000554g0030 Nicotiana tabacum HOM05D003874 ORTHO05D004545 1.4e-35 154.5 339 33.0
PGSC0003DMG400008421 Solanum tuberosum HOM05D003874 ORTHO05D004545 3.1e-35 153.3 338 35.5
DCAR_003510 Daucus carota HOM05D003874 ORTHO05D004545 9.1e-35 151.8 311 38.3
Hund16917 Selenicereus undatus HOM05D003874 ORTHO05D004545 1.5e-34 151.0 111 64.9
DCAR_014068 Daucus carota HOM05D003874 ORTHO05D004545 2.0e-34 150.6 208 46.6
HanXRQChr15g0484691 Helianthus annuus HOM05D003874 ORTHO05D004545 2.6e-34 150.2 124 59.7
AUR62013384 Chenopodium quinoa HOM05D003874 ORTHO05D004545 3.4e-34 149.8 119 63.0
AUR62038535 Chenopodium quinoa HOM05D003874 ORTHO05D004545 4.5e-34 149.4 170 51.2
EL10Ac1g01274 Beta vulgaris HOM05D003874 ORTHO05D004545 5.9e-34 149.1 185 47.0
SGA_v2.0_scaffold24G10651 Striga asiatica HOM05D003874 ORTHO05D004545 5.9e-34 149.1 321 36.8
CsaV3_5G032550 Cucumis sativus L. HOM05D003874 ORTHO05D004545 7.7e-34 148.7 333 33.9
Sed0021145 Sechium edule HOM05D003874 ORTHO05D004545 7.7e-34 148.7 332 34.0
CiPaw.03G014100 Carya illinoinensis HOM05D003874 ORTHO05D004545 1.0e-33 148.3 363 37.2
Ciclev10020185m.g Citrus clementina HOM05D003874 ORTHO05D004545 2.9e-33 146.7 371 32.6
SGA_v2.0_scaffold118G32614 Striga asiatica HOM05D003874 ORTHO05D004545 2.9e-33 146.7 328 37.5
MSTRG.1601 Avicennia marina HOM05D003874 ORTHO05D004545 3.8e-33 146.4 344 32.8
ECA232G3741 Erigeron canadensis HOM05D003874 ORTHO05D004545 5.0e-33 146.0 319 35.4
PGR042G0135 Punica granatum HOM05D003874 ORTHO05D004545 5.0e-33 146.0 329 36.8
SalBow6G4185 Salvia bowleyana HOM05D003874 ORTHO05D004545 1.1e-32 144.8 323 35.9
Migut.C01383 Erythranthe guttata HOM05D003874 ORTHO05D004545 1.9e-32 144.1 325 36.6
Sabra19G0083400 Salix brachista HOM05D003637 ORTHO05D004175 9.4e-32 141.7 407 31.0
THA.LOC104813368 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 1.6e-31 141.0 297 33.3
Ah.05g170390 Amaranthus hybridus HOM05D003874 ORTHO05D004545 2.7e-31 140.2 227 41.4
Eucgr.F02945 Eucalyptus grandis HOM05D003874 ORTHO05D004545 2.7e-31 140.2 410 32.9
THA.LOC104806752 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 2.7e-31 140.2 114 56.1
PGSC0003DMG400012413 Solanum tuberosum HOM05D003874 ORTHO05D004545 7.9e-31 138.7 323 34.4
Atru.chr13.2495 Acer truncatum HOM05D003874 ORTHO05D004545 1.8e-30 137.5 332 35.5
CAN.G761.11 Capsicum annuum HOM05D003874 ORTHO05D004545 3.0e-30 136.7 101 63.4
CAN.G761.10 Capsicum annuum HOM05D003874 ORTHO05D004545 3.9e-30 136.3 101 63.4
THA.LOC104808737 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 3.9e-30 136.3 344 32.8
Atru.chr13.2507 Acer truncatum HOM05D003874 ORTHO05D004545 5.1e-30 136.0 332 35.5
MBI06_g14322_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 5.1e-30 136.0 261 39.1
Carub.0007s2901 Capsella rubella HOM05D003874 ORTHO05D004545 6.7e-30 135.6 338 33.1
Thhalv10028826m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 8.8e-30 135.2 306 33.0
CsaV3_2G033240 Cucumis sativus L. HOM05D003874 ORTHO05D004545 1.1e-29 134.8 369 33.1
Solyc07g063050.1 Solanum lycopersicum HOM05D003874 ORTHO05D004545 1.1e-29 134.8 324 35.2
Sopen07g031240 Solanum pennellii HOM05D003874 ORTHO05D004545 1.1e-29 134.8 324 35.2
unitig_37.g13076 Utricularia gibba HOM05D003874 ORTHO05D004545 3.3e-29 133.3 158 48.1
AT4G10080 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 4.4e-29 132.9 336 32.7
MSTRG.22473 Avicennia marina HOM05D003874 ORTHO05D004545 5.7e-29 132.5 333 32.7
Aa31LG9G11920 Aethionema arabicum HOM05D003874 ORTHO05D004545 2.8e-28 130.2 279 34.1
Aa31LG9G4130 Aethionema arabicum HOM05D003874 ORTHO05D004545 3.7e-28 129.8 339 31.9
Carub.0006s2864 Capsella rubella HOM05D003874 ORTHO05D004545 8.2e-28 128.6 302 34.1
Sp6g07450 Schrenkiella parvula HOM05D003874 ORTHO05D004545 8.2e-28 128.6 337 33.5
A02p26740 Brassica napus HOM05D003874 ORTHO05D004545 1.1e-27 128.3 340 32.6
BraA02t07678Z Brassica rapa HOM05D003874 ORTHO05D004545 1.1e-27 128.3 340 32.6
ClCG11G008410 Citrullus lanatus HOM05D003874 ORTHO05D004545 1.1e-27 128.3 379 32.5
BraA09t38447Z Brassica rapa HOM05D003874 ORTHO05D004545 2.4e-27 127.1 286 34.6
SalBow1G3841 Salvia bowleyana HOM05D003874 ORTHO05D004545 2.4e-27 127.1 282 34.8
AT4G13530 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 3.1e-27 126.7 339 32.2
Oeu046029.1 Olea europaea HOM05D003874 ORTHO05D004545 3.1e-27 126.7 187 42.2
A09p28850 Brassica napus HOM05D003874 ORTHO05D004545 4.1e-27 126.3 286 35.0
BolC2t10292H Brassica oleracea HOM05D003874 ORTHO05D004545 7.0e-27 125.6 140 44.3
CARHR219160 Cardamine hirsuta HOM05D003874 ORTHO05D004545 9.1e-27 125.2 318 30.5
Lalb_Chr15g0080071 Lupinus albus HOM05D003874 ORTHO05D004545 2.0e-26 124.0 107 61.7
BcaB01g01449 Brassica carinata HOM05D003874 ORTHO05D004545 2.6e-26 123.6 172 40.1
AL6G43860 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 3.4e-26 123.2 322 32.3
CDE07G0664 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 5.9e-26 122.5 293 34.8
BcaC03g16428 Brassica carinata HOM05D003874 ORTHO05D004545 7.7e-26 122.1 153 41.8
C02p42530 Brassica napus HOM05D003874 ORTHO05D004545 7.7e-26 122.1 153 41.8
BcaB05g23922 Brassica carinata HOM05D003874 ORTHO05D004545 1.0e-25 121.7 263 33.1
Thhalv10025948m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 2.2e-25 120.6 320 31.6
arahy.Tifrunner.gnm1.ann1.GHV9B3 Arachis hypogaea HOM05D003874 ORTHO05D004545 6.5e-25 119.0 111 55.9
arahy.Tifrunner.gnm1.ann1.N113B0 Arachis hypogaea HOM05D003874 ORTHO05D004545 6.5e-25 119.0 111 55.9
Lj3g0022236 Lotus japonicus HOM05D003874 ORTHO05D004545 1.9e-24 117.5 120 50.8
Zm00001eb182290 Zea mays HOM05D003874 ORTHO05D004545 2.5e-24 117.1 255 37.6
THA.LOC104821626 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 4.2e-24 116.3 334 32.0
CARHR261100 Cardamine hirsuta HOM05D003874 ORTHO05D004545 9.4e-24 115.2 334 31.1
Sabra13G0083800 Salix brachista HOM05D003874 ORTHO05D004545 1.0e-22 111.7 318 33.3
Zm00001eb366050 Zea mays HOM05D003874 ORTHO05D004545 1.0e-22 111.7 142 39.4
TPR.G25536 Trifolium pratense HOM05D003874 ORTHO05D004545 1.8e-22 110.9 109 56.9
BcaC04g21012 Brassica carinata HOM05D003874 ORTHO05D004545 2.3e-22 110.5 278 33.5
C09p36670 Brassica napus HOM05D003874 ORTHO05D004545 2.3e-22 110.5 278 33.5
BolC9t56498H Brassica oleracea HOM05D003874 ORTHO05D004545 2.3e-22 110.5 278 33.5
Os02g0558500 Oryza sativa ssp. japonica HOM05D003874 ORTHO05D004545 5.2e-22 109.4 101 50.5
AL7G43110 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 6.7e-22 109.0 318 29.6
A05p16560 Brassica napus HOM05D003874 ORTHO05D004545 8.8e-22 108.6 131 46.6
BraA05t20564Z Brassica rapa HOM05D003874 ORTHO05D004545 8.8e-22 108.6 131 46.6
BcaC08g44301 Brassica carinata HOM05D003874 ORTHO05D004545 1.1e-21 108.2 323 31.6
C06p17230 Brassica napus HOM05D003874 ORTHO05D004545 1.5e-21 107.8 323 31.6
BolC6t36923H Brassica oleracea HOM05D003874 ORTHO05D004545 1.5e-21 107.8 323 31.6
Psat5g232160 Pisum sativum HOM05D003874 ORTHO05D004545 2.0e-21 107.5 161 41.6
Glyma.06G323500 Glycine max HOM05D003874 ORTHO05D004545 3.3e-21 106.7 113 54.0
Medtr3g006350 Medicago truncatula HOM05D003874 ORTHO05D004545 5.7e-21 105.9 130 47.7
Ca_27532_v3 Cicer arietinum L. HOM05D003874 ORTHO05D004545 7.4e-21 105.5 165 43.6
Sopen11g018310 Solanum pennellii HOM05D003874 ORTHO05D004545 1.3e-20 104.8 308 31.8
CSS0021765 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 1.7e-20 104.4 73 68.5
Hma1.2p1_0016F.1_g010740 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 2.8e-20 103.6 280 32.5
Hma1.2p1_0016F.1_g010745 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 2.8e-20 103.6 280 32.5
Sp7g11130 Schrenkiella parvula HOM05D003874 ORTHO05D004545 6.3e-20 102.4 261 34.9
HPP92_005639 Vanilla planifolia HOM05D000572 ORTHO05D000840 1.1e-19 101.7 229 36.2
VMungo1080G0642 Vigna mungo HOM05D003874 ORTHO05D004545 4.1e-19 99.8 130 49.2
Oeu013912.1 Olea europaea HOM05D003874 ORTHO05D004545 5.3e-19 99.4 445 25.6
Glyma.04G111000 Glycine max HOM05D003874 ORTHO05D004545 7.0e-19 99.0 112 51.8
Phvul.005G002800 Phaseolus vulgaris HOM05D003874 ORTHO05D004545 7.0e-19 99.0 116 50.9
Solyc11g040300.2 Solanum lycopersicum HOM05D003874 ORTHO05D004545 1.0e-17 95.1 73 60.3
Zm00001eb145550 Zea mays HOM05D003874 ORTHO05D004545 5.0e-17 92.8 216 31.0
MELO3C008094.2 Cucumis melo HOM05D003874 ORTHO05D004545 6.1e-15 85.9 356 28.4
HPP92_009210 Vanilla planifolia HOM05D003874 ORTHO05D004545 1.4e-14 84.7 227 31.7
Sc21g0007200 Simmondsia chinensis HOM05D003874 ORTHO05D004545 1.8e-14 84.3 260 31.9
SEGI_28614 Sequoiadendron giganteum HOM05D003874 ORTHO05D004545 1.7e-12 77.8 97 39.2
CARHR261120 Cardamine hirsuta HOM05D003874 ORTHO05D004545 1.1e-11 75.1 146 32.2
Nn4g22326 Nelumbo nucifera HOM05D003874 ORTHO05D004545 1.2e-10 71.6 43 74.4
BcaB05g25162 Brassica carinata HOM05D003874 ORTHO05D004545 1.6e-10 71.2 198 30.8
SMO112G0035 Selaginella moellendorffii HOM05D001925 ORTHO05D004257 1.8e-06 57.8 110 33.6
Pp3c15_17300 Physcomitrium patens HOM05D001925 ORTHO05D004257 5.2e-06 56.2 111 31.5


User provided reference genes

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