Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G01632 Aquilegia oxysepala HOM05D002505 ORTHO05D007115 3.8e-235 817.8 409 100.0
Aqoxy5G02423 Aquilegia oxysepala HOM05D002505 ORTHO05D007115 2.0e-231 805.4 409 98.5
TAR375G0040 Trochodendron aralioides HOM05D002505 ORTHO05D007115 6.4e-166 587.8 412 71.8
Haze_09143 Corylus avellana HOM05D002505 ORTHO05D007115 2.4e-157 559.3 412 66.7
Cfa011943 Carpinus fangiana HOM05D002505 ORTHO05D007115 3.0e-155 552.4 411 66.9
QL02p027659 Quercus lobata HOM05D002505 ORTHO05D007115 5.1e-155 551.6 411 65.9
CiPaw.11G114300 Carya illinoinensis HOM05D002505 ORTHO05D007115 5.3e-152 541.6 411 65.7
GSVIVG01019628001 Vitis vinifera HOM05D002505 ORTHO05D007115 4.5e-151 538.5 410 65.4
TWI60G0007 Tripterygium wilfordii HOM05D002505 ORTHO05D007115 5.5e-149 531.6 418 63.2
CANSAT21G2418 Cannabis sativa HOM05D002505 ORTHO05D007115 7.1e-149 531.2 412 67.0
Prupe.5G127300 Prunus persica HOM05D002505 ORTHO05D007115 7.1e-149 531.2 412 63.1
Thecc.03G223700 Theobroma cacao HOM05D002505 ORTHO05D007115 9.3e-149 530.8 411 65.2
Duzib205G1766 Durio zibethinus HOM05D002505 ORTHO05D007115 1.6e-148 530.0 411 64.5
Dinv11454 Davidia involucrata HOM05D002505 ORTHO05D007115 2.7e-148 529.3 410 65.4
FAN17G1638 Fragaria x ananassa HOM05D002505 ORTHO05D007115 3.5e-148 528.9 413 64.2
Manes.02G004600 Manihot esculenta HOM05D002505 ORTHO05D007115 6.0e-148 528.1 404 66.8
Oeu010746.1 Olea europaea HOM05D002505 ORTHO05D007115 6.0e-148 528.1 410 66.3
Dinv37391 Davidia involucrata HOM05D002505 ORTHO05D007115 1.0e-147 527.3 381 69.0
FvH4_4g16080 Fragaria vesca HOM05D002505 ORTHO05D007115 6.7e-147 524.6 418 63.6
FAN12G2820 Fragaria x ananassa HOM05D002505 ORTHO05D007115 6.7e-147 524.6 418 63.6
FAN07G1120 Fragaria x ananassa HOM05D002505 ORTHO05D007115 8.7e-147 524.2 413 63.4
CSS0047752 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D007115 3.3e-146 522.3 408 65.2
FAN22G1998 Fragaria x ananassa HOM05D002505 ORTHO05D007115 4.3e-146 521.9 416 63.7
Gohir.A12G238900 Gossypium hirsutum HOM05D002505 ORTHO05D007115 5.6e-146 521.5 408 63.5
Gohir.D12G240000 Gossypium hirsutum HOM05D002505 ORTHO05D007115 5.6e-146 521.5 408 63.7
MD06G1114600 Malus domestica HOM05D002505 ORTHO05D007115 1.3e-145 520.4 414 61.8
Gorai.008G257100 Gossypium raimondii HOM05D002505 ORTHO05D007115 4.0e-144 515.4 408 63.2
Lj2A158G82 Lonicera japonica HOM05D002505 ORTHO05D007115 6.9e-144 514.6 440 60.7
TPR.G36929 Trifolium pratense HOM05D002505 ORTHO05D007115 1.3e-142 510.4 410 61.5
PSO384G5034 Papaver somniferum HOM05D002505 ORTHO05D007115 1.7e-142 510.0 417 62.8
HanXRQChr02g0047181 Helianthus annuus HOM05D002505 ORTHO05D007115 6.5e-142 508.1 414 61.6
Ca_12555_v3 Cicer arietinum L. HOM05D002505 ORTHO05D007115 1.4e-141 506.9 409 61.1
MBI04_g06931_MAGBIO Magnolia biondii HOM05D002505 ORTHO05D007115 1.4e-141 506.9 411 65.2
Nitab4.5_0005042g0030 Nicotiana tabacum HOM05D002505 ORTHO05D007115 4.2e-141 505.4 378 65.3
LjContig00141g0018407 Lotus japonicus HOM05D002505 ORTHO05D007115 5.5e-141 505.0 411 61.8
vmacro11517 Vaccinium macrocarpon HOM05D002505 ORTHO05D007115 5.5e-141 505.0 477 55.1
PSO339G4385 Papaver somniferum HOM05D002505 ORTHO05D007115 7.1e-141 504.6 418 61.5
Eucgr.D01694 Eucalyptus grandis HOM05D002505 ORTHO05D007115 1.6e-140 503.4 393 63.9
Potri.003G145100 Populus trichocarpa HOM05D002505 ORTHO05D007115 1.6e-140 503.4 419 61.1
Cpa.g.sc175.6 Carica papaya HOM05D002505 ORTHO05D007115 2.1e-140 503.1 383 65.3
Sopen08g031180 Solanum pennellii HOM05D002505 ORTHO05D007115 2.1e-140 503.1 410 62.0
Psat6g045400 Pisum sativum HOM05D002505 ORTHO05D007115 2.7e-140 502.7 409 61.1
Nitab4.5_0002728g0050 Nicotiana tabacum HOM05D002505 ORTHO05D007115 4.6e-140 501.9 410 61.5
Solyc08g082960.3 Solanum lycopersicum HOM05D002505 ORTHO05D007115 7.9e-140 501.1 410 61.5
Lalb_Chr17g0338531 Lupinus albus HOM05D002505 ORTHO05D007115 1.9e-138 496.5 409 59.4
RcHm_v2.0_Chr7g0186571 Rosa chinensis HOM05D002505 ORTHO05D007115 9.7e-138 494.2 412 60.4
Medtr1g032200 Medicago truncatula HOM05D002505 ORTHO05D007115 4.8e-137 491.9 409 60.6
SalBow6G5481 Salvia bowleyana HOM05D002505 ORTHO05D007115 4.8e-137 491.9 408 60.3
Ca_12566_v3 Cicer arietinum L. HOM05D002505 ORTHO05D007115 6.3e-137 491.5 382 62.3
Medtr5g025880 Medicago truncatula HOM05D002505 ORTHO05D007115 1.1e-136 490.7 381 63.3
Peaxi162Scf00074g00358 Petunia axillaris HOM05D002505 ORTHO05D007115 1.1e-136 490.7 383 63.4
CsaV3_5G036540 Cucumis sativus L. HOM05D002505 ORTHO05D007115 4.1e-136 488.8 412 60.7
arahy.Tifrunner.gnm1.ann1.Y3P1ER Arachis hypogaea HOM05D002505 ORTHO05D007115 5.3e-136 488.4 412 59.0
arahy.Tifrunner.gnm1.ann1.31YZJ9 Arachis hypogaea HOM05D002505 ORTHO05D007115 2.6e-135 486.1 412 59.0
Glyma.06G132900 Glycine max HOM05D002505 ORTHO05D007115 1.3e-134 483.8 407 58.7
Glyma.04G232000 Glycine max HOM05D002505 ORTHO05D007115 1.7e-134 483.4 406 59.6
Sed0001422 Sechium edule HOM05D002505 ORTHO05D007115 6.5e-134 481.5 417 60.0
ClCG05G020760 Citrullus lanatus HOM05D002505 ORTHO05D007115 8.5e-134 481.1 412 60.4
Lalb_Chr10g0095811 Lupinus albus HOM05D002505 ORTHO05D007115 8.5e-134 481.1 409 59.4
VMungo1309G3079 Vigna mungo HOM05D002505 ORTHO05D007115 1.1e-133 480.7 407 59.2
MSTRG.2011 Avicennia marina HOM05D002505 ORTHO05D007115 1.9e-133 479.9 382 60.5
AUR62007033 Chenopodium quinoa HOM05D002505 ORTHO05D007115 3.2e-133 479.2 411 57.7
AUR62019897 Chenopodium quinoa HOM05D002505 ORTHO05D007115 9.4e-133 477.6 408 58.1
PSO017G1033 Papaver somniferum HOM05D002505 ORTHO05D007115 1.2e-132 477.2 389 63.2
Phvul.009G039500 Phaseolus vulgaris HOM05D002505 ORTHO05D007115 4.6e-132 475.3 409 59.4
Ciclev10020379m.g Citrus clementina HOM05D002505 ORTHO05D007115 3.9e-131 472.2 412 59.0
Migut.J00879 Erythranthe guttata HOM05D002505 ORTHO05D007115 3.3e-130 469.2 411 57.4
CDE11G0043 Ceratophyllum demersum HOM05D002505 ORTHO05D007115 8.2e-129 464.5 415 58.3
DCAR_009648 Daucus carota HOM05D002505 ORTHO05D007115 1.1e-128 464.2 396 58.6
Cc00_g23270 Coffea canephora HOM05D002505 ORTHO05D007115 1.2e-127 460.7 409 57.9
Nn4g26685 Nelumbo nucifera HOM05D002505 ORTHO05D007115 1.5e-127 460.3 342 70.2
Actinidia22196 Actinidia chinensis HOM05D002505 ORTHO05D007115 3.4e-127 459.1 416 60.3
Lsat_1_v5_gn_6_9040 Lactuca sativa HOM05D002505 ORTHO05D007115 5.9e-127 458.4 412 58.0
PGR031G3103 Punica granatum HOM05D002505 ORTHO05D007115 5.9e-127 458.4 361 66.2
Dinv25607 Davidia involucrata HOM05D002505 ORTHO05D007115 3.8e-126 455.7 349 66.2
COL.COLO4_10772 Corchorus olitorius HOM05D002505 ORTHO05D007115 1.9e-125 453.4 352 65.1
SGA_v2.0_scaffold104G30125 Striga asiatica HOM05D002505 ORTHO05D007115 5.5e-125 451.8 409 55.5
Os10g0520700 Oryza sativa ssp. japonica HOM05D002505 ORTHO05D007115 9.4e-125 451.1 396 58.6
Sp2g26890 Schrenkiella parvula HOM05D002505 ORTHO05D007115 9.4e-125 451.1 414 55.8
Sabra01G0062100 Salix brachista HOM05D002505 ORTHO05D007115 1.0e-123 447.6 416 57.0
THA.LOC104823623 Tarenaya hassleriana HOM05D002505 ORTHO05D007115 1.0e-123 447.6 410 56.3
Aa31LG1G18070 Aethionema arabicum HOM05D002505 ORTHO05D007115 5.1e-123 445.3 417 55.4
Zm00001eb021220 Zea mays HOM05D002505 ORTHO05D007115 6.7e-123 444.9 407 56.8
ATR0757G152 Amborella trichopoda HOM05D002505 ORTHO05D007115 3.3e-122 442.6 420 56.2
unitig_22.g5105 Utricularia gibba HOM05D002505 ORTHO05D007115 4.4e-122 442.2 374 57.8
A06p30440 Brassica napus HOM05D002505 ORTHO05D007115 1.4e-120 437.2 414 54.8
BraA06t25993Z Brassica rapa HOM05D002505 ORTHO05D007115 9.1e-120 434.5 414 54.3
BolC3t18519H Brassica oleracea HOM05D002505 ORTHO05D007115 1.5e-119 433.7 413 54.7
C03p62620 Brassica napus HOM05D002505 ORTHO05D007115 7.7e-119 431.4 413 54.2
CARHR277730 Cardamine hirsuta HOM05D002505 ORTHO05D007115 1.0e-118 431.0 415 54.2
AT5G63830 Arabidopsis thaliana HOM05D002505 ORTHO05D007115 1.1e-117 427.6 416 54.1
MELO3C012450.2 Cucumis melo HOM05D002505 ORTHO05D007115 7.2e-117 424.9 368 59.2
BcaC01g02620 Brassica carinata HOM05D002505 ORTHO05D007115 1.2e-116 424.1 384 57.0
PGSC0003DMG400012246 Solanum tuberosum HOM05D002505 ORTHO05D007115 1.8e-115 420.2 344 61.0
SEGI_04382 Sequoiadendron giganteum HOM05D002505 ORTHO05D007115 1.5e-114 417.2 434 50.9
CAN.G567.73 Capsicum annuum HOM05D002505 ORTHO05D007115 2.2e-113 413.3 349 58.7
HPP92_022335 Vanilla planifolia HOM05D002505 ORTHO05D007115 6.3e-113 411.8 467 49.3
EL10Ac5g12461 Beta vulgaris HOM05D002505 ORTHO05D007115 1.1e-112 411.0 361 56.5
Thhalv10004334m.g Eutrema salsugineum HOM05D002505 ORTHO05D007115 1.4e-112 410.6 415 52.8
HPP92_022360 Vanilla planifolia HOM05D002505 ORTHO05D007115 5.3e-112 408.7 480 48.3
Carub.0008s2460 Capsella rubella HOM05D002505 ORTHO05D007115 2.0e-111 406.8 413 51.6
ECA240G2126 Erigeron canadensis HOM05D002505 ORTHO05D007115 1.5e-109 400.6 359 57.9
AL8G41060 Arabidopsis lyrata HOM05D002505 ORTHO05D007115 5.5e-109 398.7 413 51.1
Glyma.13G121900 Glycine max HOM05D002505 ORTHO05D007115 2.1e-108 396.7 346 56.4
FAN08G0319 Fragaria x ananassa HOM05D002505 ORTHO05D007115 4.1e-104 382.5 300 63.3
Pp3c16_17440 Physcomitrium patens HOM05D002505 ORTHO05D007115 5.9e-87 325.5 450 42.4
SMO348G0019 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 5.9e-87 325.5 367 46.9
Mapoly0049s0078 Marchantia polymorpha HOM05D002505 ORTHO05D007115 3.9e-86 322.8 465 39.4
Sc22g0004750 Simmondsia chinensis HOM05D002505 ORTHO05D007115 1.4e-83 314.3 264 58.0
SEGI_16855 Sequoiadendron giganteum HOM05D002505 ORTHO05D007115 6.4e-81 305.4 313 52.4
vmacro04587 Vaccinium macrocarpon HOM05D002505 ORTHO05D007115 3.4e-74 283.1 351 47.3
Hma1.2p1_0456F.1_g156510 Hydrangea macrophylla HOM05D002505 ORTHO05D007115 1.0e-70 271.6 222 59.9
RcHm_v2.0_Chr7g0184121 Rosa chinensis HOM05D002505 ORTHO05D007115 7.3e-69 265.4 201 63.2
RhsimUnG0115700 Rhododendron simsii HOM05D002505 ORTHO05D007115 3.1e-67 260.0 267 52.4
AagrBONN_evm.TU.Sc2ySwM_368.1194 Anthoceros agrestis HOM05D002505 ORTHO05D007115 2.6e-66 256.9 311 46.3
FAN13G3213 Fragaria x ananassa HOM05D002505 ORTHO05D007115 2.9e-65 253.4 190 63.2
Potri.001G085800 Populus trichocarpa HOM05D002505 ORTHO05D007115 4.4e-58 229.6 178 61.2
Atru.chr5.482 Acer truncatum HOM05D002505 ORTHO05D007115 2.2e-57 227.3 157 71.3
Medtr1g090530 Medicago truncatula HOM05D002505 ORTHO05D007115 8.4e-49 198.7 236 45.8
MCO07G240 Micromonas commoda HOM05D002505 ORTHO05D007115 1.6e-44 184.5 397 33.2
Rhsim10G0016900 Rhododendron simsii HOM05D000068 ORTHO05D004691 2.9e-41 173.7 134 64.9
Atru.chr5.483 Acer truncatum HOM05D002505 ORTHO05D007115 3.8e-41 173.3 134 59.0
Zm00001eb044440 Zea mays HOM05D002505 ORTHO05D007115 8.4e-41 172.2 150 59.3
CBR_g20449 Chara braunii HOM05D002505 ORTHO05D007115 9.3e-40 168.7 327 32.1
SMO285G0002 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 1.5e-37 161.4 300 34.3
FvH4_5g11280 Fragaria vesca HOM05D002505 ORTHO05D007115 5.3e-35 152.9 254 36.2
FAN05G1175 Fragaria x ananassa HOM05D002505 ORTHO05D007115 2.0e-34 151.0 120 61.7
Sc22g0004760 Simmondsia chinensis HOM05D002505 ORTHO05D007115 1.5e-29 134.8 131 55.7
FAN14G3314 Fragaria x ananassa HOM05D002505 ORTHO05D007115 2.8e-28 130.6 132 49.2
Actinidia04163 Actinidia chinensis HOM05D002436 ORTHO05D002754 9.0e-27 125.6 166 45.2
Cre08.g379050 Chlamydomonas reinhardtii HOM05D002505 ORTHO05D007115 5.5e-24 116.3 478 24.9
RcHm_v2.0_Chr7g0184131 Rosa chinensis HOM05D002505 ORTHO05D007115 3.3e-21 107.1 76 64.5
Oeu004999.3 Olea europaea HOM05D002505 ORTHO05D007115 2.9e-17 94.0 92 52.2
CSS0027773 Camellia sinensis var. sinensis HOM05D003159 ORTHO05D003780 7.4e-13 79.3 51 74.5
BraA06t26113Z Brassica rapa HOM05D005837 ORTHO05D007594 1.4e-11 75.1 112 42.0
FvH4_3g32050 Fragaria vesca HOM05D002505 ORTHO05D045879 6.9e-11 72.8 93 39.8
SMO348G0061 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 4.2e-08 63.5 152 30.9
HanXRQChr03g0061211 Helianthus annuus HOM05D002505 ORTHO05D007115 1.2e-07 62.0 80 42.5
PRCOL_00002153 Prasinoderma coloniale HOM05D024116 ORTHO05D023526 4.7e-07 60.1 323 23.5


User provided reference genes

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