Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G01535 Aquilegia oxysepala HOM05D001765 ORTHO05D005876 1.1e-78 297.4 156 100.0
Aqoxy5G02976 Aquilegia oxysepala HOM05D001765 ORTHO05D005876 2.8e-74 282.7 156 96.2
Aqoxy1G02157 Aquilegia oxysepala HOM05D001765 ORTHO05D005876 8.2e-74 281.2 156 95.5
MBI19_g07244_MAGBIO Magnolia biondii HOM05D001765 ORTHO05D005876 2.2e-66 256.5 154 89.0
Nn3g21679 Nelumbo nucifera HOM05D001765 ORTHO05D005876 4.1e-65 252.3 154 87.7
TAR633G2429 Trochodendron aralioides HOM05D001765 ORTHO05D005876 2.2e-63 246.5 152 86.8
CSS0002630 Camellia sinensis var. sinensis HOM05D001765 ORTHO05D005876 2.9e-63 246.1 155 83.9
Actinidia40362 Actinidia chinensis HOM05D001765 ORTHO05D005876 5.0e-63 245.4 154 84.4
Nn4g25612 Nelumbo nucifera HOM05D001765 ORTHO05D005876 2.5e-62 243.0 148 87.8
TAR365G0409 Trochodendron aralioides HOM05D001765 ORTHO05D005876 5.5e-62 241.9 150 86.7
Rhsim04G0234200 Rhododendron simsii HOM05D001765 ORTHO05D005876 6.1e-61 238.4 150 86.0
vmacro08062 Vaccinium macrocarpon HOM05D001765 ORTHO05D005876 6.1e-61 238.4 150 86.0
CSS0034555 Camellia sinensis var. sinensis HOM05D001765 ORTHO05D005876 2.3e-60 236.5 149 84.6
Ciclev10005673m.g Citrus clementina HOM05D001765 ORTHO05D005876 2.3e-60 236.5 154 81.8
CDE12G0657 Ceratophyllum demersum HOM05D001765 ORTHO05D005876 6.7e-60 235.0 154 84.4
Lj6P689T37 Lonicera japonica HOM05D001765 ORTHO05D005876 6.7e-60 235.0 153 81.7
QL06p011625 Quercus lobata HOM05D001765 ORTHO05D005876 6.7e-60 235.0 149 82.6
Sed0022335 Sechium edule HOM05D001765 ORTHO05D005876 6.7e-60 235.0 145 84.1
CiPaw.02G075900 Carya illinoinensis HOM05D001765 ORTHO05D005876 8.8e-60 234.6 153 81.7
ATR0706G059 Amborella trichopoda HOM05D001765 ORTHO05D005876 2.0e-59 233.4 156 83.3
Hma1.2p1_0013F.1_g008730 Hydrangea macrophylla HOM05D001765 ORTHO05D005876 3.3e-59 232.6 154 83.1
MD16G1157200 Malus domestica HOM05D001765 ORTHO05D005876 3.3e-59 232.6 156 78.2
TWI73G0761 Tripterygium wilfordii HOM05D001765 ORTHO05D005876 5.7e-59 231.9 154 80.5
Atru.chr4.3029 Acer truncatum HOM05D001765 ORTHO05D005876 7.4e-59 231.5 145 82.8
Dinv44303 Davidia involucrata HOM05D001765 ORTHO05D005876 1.3e-58 230.7 154 81.8
Haze_01276 Corylus avellana HOM05D001765 ORTHO05D005876 1.7e-58 230.3 154 79.9
Haze_17391 Corylus avellana HOM05D001765 ORTHO05D005876 1.7e-58 230.3 154 79.9
FvH4_4g19461 Fragaria vesca HOM05D001765 ORTHO05D005876 2.2e-58 229.9 152 82.2
MD13G1156300 Malus domestica HOM05D001765 ORTHO05D005876 2.2e-58 229.9 149 81.2
SEGI_21194 Sequoiadendron giganteum HOM05D001765 ORTHO05D005876 2.2e-58 229.9 152 81.6
SEGI_31674 Sequoiadendron giganteum HOM05D001765 ORTHO05D005876 2.2e-58 229.9 152 81.6
Solyc01g060030.3 Solanum lycopersicum HOM05D001765 ORTHO05D005876 2.2e-58 229.9 154 80.5
Sopen01g026230 Solanum pennellii HOM05D001765 ORTHO05D005876 2.2e-58 229.9 154 80.5
Cpa.g.sc9.87 Carica papaya HOM05D001765 ORTHO05D005876 4.8e-58 228.8 154 80.5
ClCG06G004640 Citrullus lanatus HOM05D001765 ORTHO05D005876 4.8e-58 228.8 149 81.2
Cc03_g00980 Coffea canephora HOM05D001765 ORTHO05D005876 4.8e-58 228.8 147 83.7
Prupe.1G122100 Prunus persica HOM05D001765 ORTHO05D005876 4.8e-58 228.8 154 80.5
Hma1.2p1_0078F.1_g040010 Hydrangea macrophylla HOM05D001765 ORTHO05D005876 8.2e-58 228.0 145 85.5
Ah.04g162900 Amaranthus hybridus HOM05D001765 ORTHO05D005876 1.1e-57 227.6 154 80.5
CANSAT78G1829 Cannabis sativa HOM05D001765 ORTHO05D005876 1.1e-57 227.6 149 81.2
Prupe.1G073200 Prunus persica HOM05D001765 ORTHO05D005876 1.1e-57 227.6 145 83.4
TWI09G0718 Tripterygium wilfordii HOM05D001765 ORTHO05D005876 1.1e-57 227.6 154 79.9
FAN07G0091 Fragaria x ananassa HOM05D001765 ORTHO05D005876 1.4e-57 227.3 152 80.9
Peaxi162Scf00065g00002 Petunia axillaris HOM05D001765 ORTHO05D005876 2.4e-57 226.5 156 80.8
EL10Ac4g08905 Beta vulgaris HOM05D001765 ORTHO05D005876 3.1e-57 226.1 150 81.3
PSO210G5285 Papaver somniferum HOM05D001765 ORTHO05D005876 3.1e-57 226.1 149 83.2
Sc13g0006420 Simmondsia chinensis HOM05D001765 ORTHO05D005876 3.1e-57 226.1 150 81.3
MSTRG.21776 Avicennia marina HOM05D001765 ORTHO05D005876 5.3e-57 225.3 155 80.6
CiPaw.01G139800 Carya illinoinensis HOM05D001765 ORTHO05D005876 5.3e-57 225.3 154 78.6
Nitab4.5_0004323g0040 Nicotiana tabacum HOM05D001765 ORTHO05D005876 6.9e-57 224.9 153 79.7
CAN.G874.72 Capsicum annuum HOM05D001765 ORTHO05D005876 9.1e-57 224.6 155 80.0
AUR62037504 Chenopodium quinoa HOM05D001765 ORTHO05D005876 1.2e-56 224.2 154 79.2
Gorai.006G079200 Gossypium raimondii HOM05D001765 ORTHO05D005876 1.2e-56 224.2 153 78.4
Nitab4.5_0000276g0120 Nicotiana tabacum HOM05D001765 ORTHO05D005876 1.2e-56 224.2 153 79.7
Nitab4.5_0000456g0120 Nicotiana tabacum HOM05D001765 ORTHO05D005876 1.5e-56 223.8 153 79.1
Gohir.A09G065500 Gossypium hirsutum HOM05D001765 ORTHO05D005876 2.0e-56 223.4 153 79.7
HanXRQChr05g0145931 Helianthus annuus HOM05D001765 ORTHO05D005876 2.0e-56 223.4 154 79.2
unitig_749.g13366 Utricularia gibba HOM05D001765 ORTHO05D005876 2.0e-56 223.4 144 84.0
Migut.N00048 Erythranthe guttata HOM05D001765 ORTHO05D005876 2.6e-56 223.0 153 81.0
Gohir.D09G064400 Gossypium hirsutum HOM05D001765 ORTHO05D005876 4.5e-56 222.2 153 77.8
Nitab4.5_0010629g0030 Nicotiana tabacum HOM05D001765 ORTHO05D005876 5.9e-56 221.9 150 80.0
Thecc.04G297600 Theobroma cacao HOM05D001765 ORTHO05D005876 5.9e-56 221.9 150 80.7
Oeu063485.1 Olea europaea HOM05D001765 ORTHO05D005876 7.7e-56 221.5 152 79.6
Duzib052G0074 Durio zibethinus HOM05D001765 ORTHO05D005876 1.0e-55 221.1 150 80.7
Manes.03G202700 Manihot esculenta HOM05D001765 ORTHO05D005876 1.0e-55 221.1 153 79.1
PGR031G3587 Punica granatum HOM05D001765 ORTHO05D005876 1.0e-55 221.1 150 82.0
Gorai.011G199400 Gossypium raimondii HOM05D001765 ORTHO05D005876 1.3e-55 220.7 146 82.2
ECA246G2338 Erigeron canadensis HOM05D001765 ORTHO05D005876 1.7e-55 220.3 149 81.9
Duzib151G0385 Durio zibethinus HOM05D001765 ORTHO05D005876 5.0e-55 218.8 150 78.7
THA.LOC104802705 Tarenaya hassleriana HOM05D001765 ORTHO05D005876 5.0e-55 218.8 157 77.7
Lalb_Chr13g0298421 Lupinus albus HOM05D001765 ORTHO05D005876 8.5e-55 218.0 153 77.8
PSO761G0153 Papaver somniferum HOM05D001765 ORTHO05D005876 1.1e-54 217.6 149 80.5
Potri.010G142400 Populus trichocarpa HOM05D001765 ORTHO05D005876 1.1e-54 217.6 145 79.3
Gohir.A10G171300 Gossypium hirsutum HOM05D001765 ORTHO05D005876 1.4e-54 217.2 146 80.8
Gohir.D10G178400 Gossypium hirsutum HOM05D001765 ORTHO05D005876 2.5e-54 216.5 145 82.1
Lsat_1_v5_gn_6_116901 Lactuca sativa HOM05D001765 ORTHO05D005876 2.5e-54 216.5 153 77.1
Sabra08G0081000 Salix brachista HOM05D001765 ORTHO05D005876 2.5e-54 216.5 145 79.3
SGA_v2.0_scaffold119G32663 Striga asiatica HOM05D001765 ORTHO05D005876 2.5e-54 216.5 155 78.1
Oeu001465.1 Olea europaea HOM05D001765 ORTHO05D005876 3.2e-54 216.1 154 76.0
DCAR_002506 Daucus carota HOM05D001765 ORTHO05D005876 4.2e-54 215.7 156 79.5
Glyma.07G241300 Glycine max HOM05D001765 ORTHO05D005876 9.4e-54 214.5 152 77.0
Eucgr.A00351 Eucalyptus grandis HOM05D001765 ORTHO05D005876 1.2e-53 214.2 154 76.6
Glyma.17G032500 Glycine max HOM05D001765 ORTHO05D005876 1.6e-53 213.8 152 76.3
Ca_21450_v3 Cicer arietinum L. HOM05D001765 ORTHO05D005876 2.1e-53 213.4 156 76.3
Sabra10G0110100 Salix brachista HOM05D001765 ORTHO05D005876 3.6e-53 212.6 145 77.9
TPR.G16856 Trifolium pratense HOM05D001765 ORTHO05D005876 7.9e-53 211.5 143 79.7
CsaV3_2G015100 Cucumis sativus L. HOM05D001765 ORTHO05D005876 1.0e-52 211.1 134 83.6
MELO3C023334.2 Cucumis melo HOM05D001765 ORTHO05D005876 1.4e-52 210.7 133 84.2
Carub.0008s0928 Capsella rubella HOM05D001765 ORTHO05D005876 1.8e-52 210.3 154 76.0
Potri.008G107100 Populus trichocarpa HOM05D001765 ORTHO05D005876 1.8e-52 210.3 145 77.9
RcHm_v2.0_Chr4g0424571 Rosa chinensis HOM05D001765 ORTHO05D005876 1.8e-52 210.3 132 85.6
THA.LOC104818892 Tarenaya hassleriana HOM05D001765 ORTHO05D005876 5.2e-52 208.8 152 76.3
Psat4g024600 Pisum sativum HOM05D001765 ORTHO05D005876 6.7e-52 208.4 155 76.8
VMungo1215G2482 Vigna mungo HOM05D001765 ORTHO05D005876 6.7e-52 208.4 143 76.9
CDE01G0626 Ceratophyllum demersum HOM05D001765 ORTHO05D005876 8.8e-52 208.0 156 75.6
Lalb_Chr07g0182091 Lupinus albus HOM05D001765 ORTHO05D005876 1.1e-51 207.6 147 75.5
Ciclev10016311m.g Citrus clementina HOM05D001765 ORTHO05D005876 1.5e-51 207.2 133 83.5
AUR62004747 Chenopodium quinoa HOM05D001765 ORTHO05D005876 2.0e-51 206.8 138 81.2
COL.COLO4_11257 Corchorus olitorius HOM05D001765 ORTHO05D005876 2.0e-51 206.8 159 73.6
Aa31LG11G7990 Aethionema arabicum HOM05D001765 ORTHO05D005876 2.6e-51 206.5 155 74.8
COL.COLO4_34649 Corchorus olitorius HOM05D001765 ORTHO05D005123 2.6e-51 206.5 155 72.9
Phvul.003G112500 Phaseolus vulgaris HOM05D001765 ORTHO05D005876 2.6e-51 206.5 155 73.5
VMungo0647G0513 Vigna mungo HOM05D000091 ORTHO05D005533 4.4e-51 205.7 141 78.0
A06p38370 Brassica napus HOM05D001765 ORTHO05D005876 1.3e-50 204.1 155 74.2
BraA06t26751Z Brassica rapa HOM05D001765 ORTHO05D005876 1.3e-50 204.1 155 74.2
Os11g0199600 Oryza sativa ssp. japonica HOM05D001765 ORTHO05D005876 1.7e-50 203.8 147 76.2
Thhalv10004753m.g Eutrema salsugineum HOM05D001765 ORTHO05D005876 2.2e-50 203.4 145 78.6
BcaC03g17719 Brassica carinata HOM05D001765 ORTHO05D005876 2.8e-50 203.0 147 76.9
C02p57300 Brassica napus HOM05D001765 ORTHO05D003527 2.8e-50 203.0 147 76.9
BolC2t11799H Brassica oleracea HOM05D001765 ORTHO05D003527 2.8e-50 203.0 147 76.9
BolC7t44518H Brassica oleracea HOM05D001765 ORTHO05D005876 3.7e-50 202.6 148 76.4
CARHR182130 Cardamine hirsuta HOM05D001765 ORTHO05D005876 6.3e-50 201.8 140 78.6
Sed0021764 Sechium edule HOM05D001765 ORTHO05D005876 6.3e-50 201.8 130 83.1
Sp2g19740 Schrenkiella parvula HOM05D001765 ORTHO05D005876 8.2e-50 201.4 157 72.6
SpUn0021_0110 Schrenkiella parvula HOM05D001765 ORTHO05D005876 8.2e-50 201.4 157 72.6
arahy.Tifrunner.gnm1.ann1.03CYAA Arachis hypogaea HOM05D001765 ORTHO05D005876 1.1e-49 201.1 133 81.2
BcaC06g30699 Brassica carinata HOM05D001765 ORTHO05D005876 1.4e-49 200.7 148 75.0
A02p38130 Brassica napus HOM05D001765 ORTHO05D003527 1.4e-49 200.7 139 78.4
AT5G49400 Arabidopsis thaliana HOM05D001765 ORTHO05D005876 1.8e-49 200.3 148 75.0
BcaNung02601 Brassica carinata HOM05D001765 ORTHO05D005876 1.8e-49 200.3 148 75.7
C07p39890 Brassica napus HOM05D001765 ORTHO05D005876 1.8e-49 200.3 148 75.7
Phvul.008G245800 Phaseolus vulgaris HOM05D001765 ORTHO05D005876 3.1e-49 199.5 149 73.8
Phvul.009G074533 Phaseolus vulgaris HOM05D001765 ORTHO05D005876 3.1e-49 199.5 149 73.8
Zm00001eb109890 Zea mays HOM05D001765 ORTHO05D005876 3.1e-49 199.5 148 74.3
Zm00001eb328920 Zea mays HOM05D001765 ORTHO05D005876 3.1e-49 199.5 147 74.8
AL8G23110 Arabidopsis lyrata HOM05D001765 ORTHO05D005876 5.3e-49 198.7 148 74.3
Mapoly0023s0038 Marchantia polymorpha HOM05D001765 ORTHO05D005876 1.7e-47 193.7 164 68.3
BraA02t08788Z Brassica rapa HOM05D001765 ORTHO05D005876 1.9e-46 190.3 139 77.0
Lj4g0023600 Lotus japonicus HOM05D001765 ORTHO05D005876 1.9e-46 190.3 136 77.2
Pp3c14_13970 Physcomitrium patens HOM05D001765 ORTHO05D005876 3.2e-46 189.5 136 77.9
AagrBONN_evm.TU.Sc2ySwM_362.810 Anthoceros agrestis HOM05D001765 ORTHO05D005876 1.2e-45 187.6 157 70.1
Mapoly0171s0012 Marchantia polymorpha HOM05D001765 ORTHO05D005876 5.7e-43 178.7 138 71.0
Manes.15G005450 Manihot esculenta HOM05D001765 ORTHO05D005876 2.2e-42 176.8 134 71.6
BcaB07g34154 Brassica carinata HOM05D001765 ORTHO05D005876 1.8e-41 173.7 131 74.0
MBI19_g17409_MAGBIO Magnolia biondii HOM05D001765 ORTHO05D005876 2.4e-41 173.3 154 68.2
Pp3c14_17690 Physcomitrium patens HOM05D001765 ORTHO05D005876 2.9e-39 166.4 133 67.7
Nitab4.5_0004323g0070 Nicotiana tabacum HOM05D001765 ORTHO05D005876 1.6e-37 160.6 114 79.8
AagrBONN_evm.TU.Sc2ySwM_228.5656 Anthoceros agrestis HOM05D001765 ORTHO05D005876 1.0e-36 157.9 121 75.2
SMO340G0272 Selaginella moellendorffii HOM05D001765 ORTHO05D005876 3.1e-33 146.4 134 64.2
CBR_g53494 Chara braunii HOM05D000188 ORTHO05D005876 1.2e-32 144.4 138 65.9
Zm00001eb091100 Zea mays HOM05D001765 ORTHO05D005876 1.2e-29 134.4 128 60.9
Zm00001eb276930 Zea mays HOM05D001765 ORTHO05D005876 1.4e-28 131.0 109 68.8
GSVIVG01035017001 Vitis vinifera HOM05D001765 ORTHO05D005876 1.2e-27 127.9 84 88.1
CAN.G201.7 Capsicum annuum HOM05D001765 ORTHO05D005876 1.8e-25 120.6 150 54.0
Lsat_1_v5_gn_6_18261 Lactuca sativa HOM05D001765 ORTHO05D005876 2.0e-24 117.1 143 51.7
HanXRQChr13g0395311 Helianthus annuus HOM05D001765 ORTHO05D005876 2.7e-24 116.7 142 51.4
ATR1159G054 Amborella trichopoda HOM05D001765 ORTHO05D005876 5.9e-24 115.5 91 68.1
SEGI_08255 Sequoiadendron giganteum HOM05D001765 ORTHO05D005876 1.7e-23 114.0 113 61.9
ECA233G0063 Erigeron canadensis HOM05D001765 ORTHO05D005876 8.0e-21 105.1 143 50.3
Zm00001eb408400 Zea mays HOM05D001765 ORTHO05D005876 1.3e-18 97.8 84 70.2
Medtr1g032030 Medicago truncatula HOM05D001765 ORTHO05D005876 1.7e-18 97.4 91 67.0
Medtr1g032370 Medicago truncatula HOM05D001765 ORTHO05D005876 1.7e-18 97.4 91 67.0
CAN.G197.3 Capsicum annuum HOM05D001765 ORTHO05D005876 1.4e-17 94.4 72 75.0
ATR1159G066 Amborella trichopoda HOM05D001765 ORTHO05D005876 2.7e-16 90.1 64 84.4
ATR1159G071 Amborella trichopoda HOM05D001765 ORTHO05D005876 3.5e-16 89.7 66 83.3
Dinv15195 Davidia involucrata HOM05D002174 ORTHO05D005447 3.2e-09 66.6 44 75.0
Cre12.g529200 Chlamydomonas reinhardtii HOM05D001765 ORTHO05D005876 2.7e-08 63.5 67 47.8


User provided reference genes

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