Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G01478 Aquilegia oxysepala HOM05D005368 ORTHO05D006417 3.5e-61 238.0 114 100.0
CANSAT11G1177 Cannabis sativa HOM05D005368 ORTHO05D006417 1.1e-54 216.5 113 91.2
TAR376G0297 Trochodendron aralioides HOM05D005368 ORTHO05D006417 1.1e-54 216.5 114 88.6
CiPaw.06G128000 Carya illinoinensis HOM05D005368 ORTHO05D006417 5.4e-54 214.2 113 87.6
Nn5g29240 Nelumbo nucifera HOM05D005368 ORTHO05D006417 5.4e-54 214.2 114 86.8
CiPaw.05G073300 Carya illinoinensis HOM05D005368 ORTHO05D006417 9.2e-54 213.4 113 87.6
PSO210G0115 Papaver somniferum HOM05D005368 ORTHO05D006417 9.2e-54 213.4 114 86.8
PSO170G4570 Papaver somniferum HOM05D005368 ORTHO05D006417 1.2e-53 213.0 114 86.0
Thecc.02G075100 Theobroma cacao HOM05D005368 ORTHO05D006417 1.0e-52 209.9 113 85.8
GSVIVG01024171001 Vitis vinifera HOM05D005368 ORTHO05D006417 1.0e-52 209.9 113 85.0
Glyma.04G008100 Glycine max HOM05D005368 ORTHO05D006417 1.3e-52 209.5 113 86.7
Medtr3g117550 Medicago truncatula HOM05D005368 ORTHO05D006417 2.3e-52 208.8 113 85.8
Lj3g0011506 Lotus japonicus HOM05D005368 ORTHO05D006417 3.0e-52 208.4 115 87.0
Glyma.06G007900 Glycine max HOM05D005368 ORTHO05D006417 3.9e-52 208.0 113 85.8
PGR042G2956 Punica granatum HOM05D005368 ORTHO05D006417 6.6e-52 207.2 113 84.1
Cfa005111 Carpinus fangiana HOM05D005368 ORTHO05D006417 1.1e-51 206.5 113 84.1
Duzib052G0771 Durio zibethinus HOM05D005368 ORTHO05D006417 1.1e-51 206.5 113 84.1
FAN20G0372 Fragaria x ananassa HOM05D005368 ORTHO05D006417 1.1e-51 206.5 113 85.0
Haze_02245 Corylus avellana HOM05D005368 ORTHO05D006417 1.5e-51 206.1 113 85.0
Haze_02248 Corylus avellana HOM05D005368 ORTHO05D006417 1.5e-51 206.1 113 85.0
Psat5g003920 Pisum sativum HOM05D005368 ORTHO05D006417 1.9e-51 205.7 113 85.0
Ca_15334_v3 Cicer arietinum L. HOM05D005368 ORTHO05D006417 2.5e-51 205.3 113 84.1
Atru.chr5.3143 Acer truncatum HOM05D005368 ORTHO05D006417 3.3e-51 204.9 113 83.2
Gohir.A12G041100 Gossypium hirsutum HOM05D005368 ORTHO05D006417 3.3e-51 204.9 113 83.2
Gohir.D02G220600 Gossypium hirsutum HOM05D005368 ORTHO05D006417 3.3e-51 204.9 113 84.1
Lalb_Chr08g0246711 Lupinus albus HOM05D005368 ORTHO05D006417 3.3e-51 204.9 113 83.2
Lalb_Chr11g0061301 Lupinus albus HOM05D005368 ORTHO05D006417 3.3e-51 204.9 113 84.1
Manes.04G083400 Manihot esculenta HOM05D005368 ORTHO05D006417 3.3e-51 204.9 117 82.9
CSS0032904 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 5.6e-51 204.1 111 84.7
Duzib132G1204 Durio zibethinus HOM05D005368 ORTHO05D006417 5.6e-51 204.1 113 83.2
Gohir.D12G031300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 5.6e-51 204.1 113 83.2
Gorai.008G032000 Gossypium raimondii HOM05D005368 ORTHO05D006417 5.6e-51 204.1 113 83.2
Sed0023703 Sechium edule HOM05D005368 ORTHO05D006417 5.6e-51 204.1 111 83.8
FAN27G2088 Fragaria x ananassa HOM05D005368 ORTHO05D006417 7.3e-51 203.8 111 84.7
Gorai.005G248500 Gossypium raimondii HOM05D005368 ORTHO05D006417 7.3e-51 203.8 113 83.2
HanXRQChr15g0478311 Helianthus annuus HOM05D005368 ORTHO05D006417 9.5e-51 203.4 111 83.8
CDE02G1335 Ceratophyllum demersum HOM05D000240 ORTHO05D001140 1.2e-50 203.0 112 83.0
ECA246G1492 Erigeron canadensis HOM05D005368 ORTHO05D006417 1.2e-50 203.0 111 83.8
Hma1.2p1_0032F.1_g020120 Hydrangea macrophylla HOM05D005368 ORTHO05D006417 1.2e-50 203.0 113 83.2
Phvul.009G002900 Phaseolus vulgaris HOM05D005368 ORTHO05D006417 1.2e-50 203.0 113 85.0
CSS0039837 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 1.6e-50 202.6 111 83.8
FvH4_2g10430 Fragaria vesca HOM05D005368 ORTHO05D006417 2.1e-50 202.2 111 83.8
FAN24G2358 Fragaria x ananassa HOM05D005368 ORTHO05D006417 2.1e-50 202.2 111 83.8
Gohir.A03G199300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 2.1e-50 202.2 113 82.3
VMungo1309G2922 Vigna mungo HOM05D005368 ORTHO05D006417 2.1e-50 202.2 113 83.2
MBI18_g13600_MAGBIO Magnolia biondii HOM05D005368 ORTHO05D006417 4.7e-50 201.1 113 83.2
MD00G1086200 Malus domestica HOM05D005368 ORTHO05D006417 4.7e-50 201.1 113 83.2
Sed0006755 Sechium edule HOM05D005368 ORTHO05D006417 4.7e-50 201.1 109 84.4
FAN15G3179 Fragaria x ananassa HOM05D005368 ORTHO05D006417 6.2e-50 200.7 111 83.8
Potri.004G163000 Populus trichocarpa HOM05D005368 ORTHO05D006417 8.0e-50 200.3 113 82.3
Potri.009G124600 Populus trichocarpa HOM05D005368 ORTHO05D006417 8.0e-50 200.3 113 82.3
COL.COLO4_26045 Corchorus olitorius HOM05D005368 ORTHO05D006417 1.4e-49 199.5 109 83.5
Cc02_g16910 Coffea canephora HOM05D005368 ORTHO05D006417 1.8e-49 199.1 113 82.3
Manes.11G081900 Manihot esculenta HOM05D005368 ORTHO05D006417 1.8e-49 199.1 117 81.2
RcHm_v2.0_Chr6g0267931 Rosa chinensis HOM05D005368 ORTHO05D006417 1.8e-49 199.1 111 82.0
CsaV3_2G015290 Cucumis sativus L. HOM05D005368 ORTHO05D006417 4.0e-49 198.0 111 81.1
Prupe.8G083900 Prunus persica HOM05D005368 ORTHO05D006417 5.2e-49 197.6 113 81.4
A01p03810 Brassica napus HOM05D005368 ORTHO05D006417 6.8e-49 197.2 111 81.1
BraA01t00366Z Brassica rapa HOM05D005368 ORTHO05D006417 6.8e-49 197.2 111 81.1
BcaNung07080 Brassica carinata HOM05D005368 ORTHO05D006417 8.9e-49 196.8 111 80.2
A03p63090 Brassica napus HOM05D005368 ORTHO05D006417 8.9e-49 196.8 111 80.2
BolC7t46501H Brassica oleracea HOM05D005368 ORTHO05D006417 8.9e-49 196.8 111 80.2
BraA03t15384Z Brassica rapa HOM05D005368 ORTHO05D006417 8.9e-49 196.8 111 80.2
ClCG11G003860 Citrullus lanatus HOM05D005368 ORTHO05D006417 8.9e-49 196.8 112 81.2
BcaNung00672 Brassica carinata HOM05D005368 ORTHO05D006417 1.5e-48 196.1 111 80.2
BcaNung00675 Brassica carinata HOM05D005368 ORTHO05D006417 1.5e-48 196.1 111 80.2
C01p04120 Brassica napus HOM05D005368 ORTHO05D006417 1.5e-48 196.1 111 80.2
Carub.0007s0559 Capsella rubella HOM05D005368 ORTHO05D006417 1.5e-48 196.1 111 80.2
AL7G16500 Arabidopsis lyrata HOM05D005368 ORTHO05D006417 2.0e-48 195.7 111 80.2
C07p60710 Brassica napus HOM05D005368 ORTHO05D006417 2.6e-48 195.3 111 79.3
TWI79G1074 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 2.6e-48 195.3 110 80.0
BcaB03g11818 Brassica carinata HOM05D005368 ORTHO05D006417 3.4e-48 194.9 111 79.3
A08p16660 Brassica napus HOM05D005368 ORTHO05D006417 3.4e-48 194.9 111 79.3
Ciclev10029601m.g Citrus clementina HOM05D005368 ORTHO05D006417 3.4e-48 194.9 113 79.6
Gorai.002G149100 Gossypium raimondii HOM05D005368 ORTHO05D006417 4.4e-48 194.5 116 80.2
TWI31G1415 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 4.4e-48 194.5 110 81.8
AT4G34700 Arabidopsis thaliana HOM05D005368 ORTHO05D006417 5.8e-48 194.1 111 79.3
Nitab4.5_0005266g0100 Nicotiana tabacum HOM05D005368 ORTHO05D006417 5.8e-48 194.1 108 81.5
CARHR243000 Cardamine hirsuta HOM05D005368 ORTHO05D006417 7.5e-48 193.7 111 80.2
Sp7g32480 Schrenkiella parvula HOM05D005368 ORTHO05D006417 7.5e-48 193.7 111 78.4
Os06g0714100 Oryza sativa ssp. japonica HOM05D005368 ORTHO05D006417 9.8e-48 193.4 110 79.1
TWI75G0748 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 9.8e-48 193.4 110 81.8
Nitab4.5_0001317g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 1.3e-47 193.0 107 82.2
HPP92_012929 Vanilla planifolia HOM05D005368 ORTHO05D006417 1.3e-47 193.0 113 77.9
CAN.G170.100 Capsicum annuum HOM05D005368 ORTHO05D006417 2.2e-47 192.2 110 79.1
Migut.N01277 Erythranthe guttata HOM05D005368 ORTHO05D006417 2.2e-47 192.2 113 78.8
Aa31LG2G15810 Aethionema arabicum HOM05D005368 ORTHO05D006417 2.9e-47 191.8 111 76.6
Hund00179 Selenicereus undatus HOM05D005368 ORTHO05D006417 2.9e-47 191.8 110 78.2
Hund00187 Selenicereus undatus HOM05D005368 ORTHO05D006417 2.9e-47 191.8 110 78.2
BcaC01g00883 Brassica carinata HOM05D005368 ORTHO05D006417 3.7e-47 191.4 111 78.4
Solyc01g110390.2 Solanum lycopersicum HOM05D005368 ORTHO05D006417 6.4e-47 190.7 110 78.2
Peaxi162Scf00016g00038 Petunia axillaris HOM05D005368 ORTHO05D006417 1.4e-46 189.5 111 76.6
QL11p046417 Quercus lobata HOM05D005368 ORTHO05D006417 2.4e-46 188.7 132 69.7
C03p85580 Brassica napus HOM05D005368 ORTHO05D006417 3.2e-46 188.3 111 76.6
THA.LOC104819629 Tarenaya hassleriana HOM05D005368 ORTHO05D006417 3.2e-46 188.3 111 76.6
MSTRG.27675 Avicennia marina HOM05D005368 ORTHO05D006417 4.1e-46 188.0 113 76.1
MSTRG.20040 Avicennia marina HOM05D005368 ORTHO05D006417 5.4e-46 187.6 113 77.0
Hund06283 Selenicereus undatus HOM05D005368 ORTHO05D006417 7.0e-46 187.2 110 73.6
MD10G1063100 Malus domestica HOM05D005368 ORTHO05D006417 1.2e-45 186.4 112 78.6
MELO3C023357.2 Cucumis melo HOM05D005368 ORTHO05D006417 3.5e-45 184.9 112 76.8
Lsat_1_v5_gn_3_44180 Lactuca sativa HOM05D005368 ORTHO05D006417 1.7e-44 182.6 99 84.8
ATR0149G005 Amborella trichopoda HOM05D005368 ORTHO05D006417 2.3e-44 182.2 111 73.0
SGA_v2.0_scaffold207G41877 Striga asiatica HOM05D005368 ORTHO05D006417 2.3e-44 182.2 110 74.5
MD00G1117500 Malus domestica HOM05D005368 ORTHO05D006417 5.6e-43 177.6 113 76.1
BraA08t33631Z Brassica rapa HOM05D005368 ORTHO05D006417 7.3e-43 177.2 146 60.3
AUR62016830 Chenopodium quinoa HOM05D005368 ORTHO05D006417 1.6e-42 176.0 112 73.2
TPR.G32174 Trifolium pratense HOM05D005368 ORTHO05D006417 2.1e-42 175.6 177 53.7
Nitab4.5_0010630g0030 Nicotiana tabacum HOM05D005368 ORTHO05D006417 2.8e-42 175.3 99 82.8
BolC1t00400H Brassica oleracea HOM05D005368 ORTHO05D006417 3.6e-42 174.9 105 75.2
AUR62010388 Chenopodium quinoa HOM05D005368 ORTHO05D006417 3.6e-42 174.9 112 72.3
Ah.01g006460 Amaranthus hybridus HOM05D005368 ORTHO05D006417 4.7e-42 174.5 112 67.9
Zm00001eb227940 Zea mays HOM05D005368 ORTHO05D006417 1.8e-41 172.6 100 76.0
Gohir.D13G096825 Gossypium hirsutum HOM05D005368 ORTHO05D006417 2.3e-41 172.2 101 78.2
Ah.01g018810 Amaranthus hybridus HOM05D005368 ORTHO05D006417 8.9e-41 170.2 101 75.2
Sc08g0000900 Simmondsia chinensis HOM05D005368 ORTHO05D006417 1.2e-40 169.9 104 73.1
Dinv23453 Davidia involucrata HOM05D005368 ORTHO05D006417 1.3e-39 166.4 95 82.1
EL10Ac9g21636 Beta vulgaris HOM05D005368 ORTHO05D006417 6.4e-39 164.1 99 72.7
SalBow3G2013 Salvia bowleyana HOM05D005368 ORTHO05D006417 5.4e-38 161.0 100 74.0
Oeu046129.2 Olea europaea HOM05D005368 ORTHO05D006417 3.5e-37 158.3 119 64.7
CDE04G1205 Ceratophyllum demersum HOM05D005368 ORTHO05D006417 4.6e-37 157.9 86 84.9
Nitab4.5_0005932g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 6.0e-37 157.5 108 71.3
Actinidia02246 Actinidia chinensis HOM05D005368 ORTHO05D006417 3.1e-33 145.2 116 64.7
Pp3c6_19130 Physcomitrium patens HOM05D005368 ORTHO05D006417 2.0e-32 142.5 111 55.0
SEGI_21378 Sequoiadendron giganteum HOM05D005368 ORTHO05D006417 5.8e-32 141.0 108 59.3
Mapoly0002s0197 Marchantia polymorpha HOM05D005368 ORTHO05D006417 1.7e-31 139.4 110 56.4
PGSC0003DMG400005571 Solanum tuberosum HOM05D005368 ORTHO05D006417 9.2e-30 133.7 80 77.5
Thhalv10026594m.g Eutrema salsugineum HOM05D005368 ORTHO05D006417 3.5e-29 131.7 111 58.6
AagrBONN_evm.TU.Sc2ySwM_368.1500 Anthoceros agrestis HOM05D005368 ORTHO05D006417 5.6e-27 124.4 107 49.5
Eucgr.G01730 Eucalyptus grandis HOM05D005368 ORTHO05D006417 7.3e-27 124.0 60 91.7
CBR_g22898 Chara braunii HOM05D000019 ORTHO05D000048 4.4e-24 114.8 109 46.8
SMO159G0001 Selaginella moellendorffii HOM05D005368 ORTHO05D006417 8.4e-23 110.5 102 50.0
HanXRQChr10g0292781 Helianthus annuus HOM05D005368 ORTHO05D006417 1.4e-22 109.8 58 81.0
SMO223G0026 Selaginella moellendorffii HOM05D000032 ORTHO05D004142 5.4e-22 107.8 98 51.0
Sopen01g052540 Solanum pennellii HOM05D005368 ORTHO05D006417 7.1e-22 107.5 57 78.9
Lj5C189G13 Lonicera japonica HOM05D006147 ORTHO05D007501 9.3e-22 107.1 60 78.3
Gohir.A13G090800 Gossypium hirsutum HOM05D005368 ORTHO05D006417 4.6e-21 104.8 80 66.2
CSS0005721 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 5.1e-20 101.3 60 76.7
Migut.B00174 Erythranthe guttata HOM05D005368 ORTHO05D006417 1.1e-17 93.6 51 88.2
unitig_60.g25866 Utricularia gibba HOM05D005368 ORTHO05D006417 3.1e-17 92.0 113 45.1
HanXRQChr17g0544121 Helianthus annuus HOM05D005368 ORTHO05D006417 4.0e-17 91.7 53 83.0
Oeu020711.1 Olea europaea HOM05D005368 ORTHO05D006417 5.3e-17 91.3 148 40.5
BolC3t20846H Brassica oleracea HOM05D005368 ORTHO05D006417 6.9e-17 90.9 53 79.2
MCO15G169 Micromonas commoda HOM05D005368 ORTHO05D006417 1.2e-16 90.1 96 44.8
BcaNung04613 Brassica carinata HOM05D005368 ORTHO05D006417 2.9e-15 85.5 55 69.1
BcaNung02377 Brassica carinata HOM05D005368 ORTHO05D006417 7.9e-13 77.4 45 73.3
MD05G1026100 Malus domestica HOM05D005333 ORTHO05D005776 5.1e-12 74.7 56 69.6
Cre11.g467668 Chlamydomonas reinhardtii HOM05D005368 ORTHO05D006417 5.3e-09 64.7 108 33.3
VMungo0540G1094 Vigna mungo HOM05D003030 ORTHO05D006417 7.1e-06 54.3 81 40.7


User provided reference genes

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