Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G01366 Aquilegia oxysepala HOM05D005482 ORTHO05D006502 0.0e+00 1117.1 625 100.0
TAR625G0934 Trochodendron aralioides HOM05D005482 ORTHO05D006502 1.1e-198 697.2 633 63.3
PSO210G6830 Papaver somniferum HOM05D005482 ORTHO05D006502 8.5e-194 681.0 644 60.4
PSO170G0154 Papaver somniferum HOM05D005482 ORTHO05D006502 3.2e-193 679.1 661 59.0
Nn1g05603 Nelumbo nucifera HOM05D005482 ORTHO05D006502 6.3e-181 638.3 633 58.5
MBI16_g31257_MAGBIO Magnolia biondii HOM05D005482 ORTHO05D006502 3.0e-175 619.4 643 56.1
Prupe.6G203300 Prunus persica HOM05D005482 ORTHO05D006502 3.8e-170 602.4 630 57.3
Dinv36943 Davidia involucrata HOM05D005482 ORTHO05D006502 1.9e-169 600.1 634 55.7
Thecc.01G089100 Theobroma cacao HOM05D005482 ORTHO05D006502 2.5e-169 599.7 623 55.9
QL06p035944 Quercus lobata HOM05D005482 ORTHO05D006502 2.6e-166 589.7 635 54.2
MD01G1040900 Malus domestica HOM05D005482 ORTHO05D006502 4.9e-165 585.5 631 54.0
Cfa006872 Carpinus fangiana HOM05D005482 ORTHO05D006502 5.0e-162 575.5 631 54.0
MD15G1310400 Malus domestica HOM05D005482 ORTHO05D006502 1.9e-161 573.5 637 54.0
Duzib264G1263 Durio zibethinus HOM05D005482 ORTHO05D006502 1.8e-159 567.0 630 55.1
CiPaw.08G141000 Carya illinoinensis HOM05D005482 ORTHO05D006502 1.5e-158 563.9 630 54.3
Hma1.2p1_0369F.1_g137400 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 2.6e-158 563.1 632 55.2
Gorai.008G093000 Gossypium raimondii HOM05D005482 ORTHO05D006502 4.4e-158 562.4 633 52.6
Gohir.A12G084900 Gossypium hirsutum HOM05D005482 ORTHO05D006502 3.7e-157 559.3 633 52.6
COL.COLO4_27370 Corchorus olitorius HOM05D005482 ORTHO05D006502 3.2e-156 556.2 624 53.8
Gohir.D12G079700 Gossypium hirsutum HOM05D005482 ORTHO05D006502 4.1e-156 555.8 633 52.3
FvH4_1g19490 Fragaria vesca HOM05D005482 ORTHO05D006502 7.0e-156 555.1 632 52.8
FAN19G3176 Fragaria x ananassa HOM05D005482 ORTHO05D006502 9.2e-156 554.7 632 52.8
Sed0012268 Sechium edule HOM05D005482 ORTHO05D006502 1.6e-155 553.9 631 52.0
CSS0020800 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 7.8e-155 551.6 665 51.3
FAN23G0007 Fragaria x ananassa HOM05D005482 ORTHO05D006502 1.0e-154 551.2 635 52.4
Dinv13587 Davidia involucrata HOM05D005482 ORTHO05D006502 3.0e-154 549.7 507 61.5
FAN28G0477 Fragaria x ananassa HOM05D005482 ORTHO05D006502 4.3e-153 545.8 641 51.8
TWI77G0993 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 5.4e-148 528.9 630 50.2
CiPaw.07G046300 Carya illinoinensis HOM05D005482 ORTHO05D006502 9.2e-148 528.1 517 58.2
Eucgr.H02447 Eucalyptus grandis HOM05D005482 ORTHO05D006502 1.5e-145 520.8 631 53.6
CSS0030560 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 4.3e-145 519.2 515 57.7
Rhsim08G0017200 Rhododendron simsii HOM05D005482 ORTHO05D006502 7.3e-145 518.5 640 53.9
vmacro18548 Vaccinium macrocarpon HOM05D005482 ORTHO05D006502 9.5e-145 518.1 657 49.2
RcHm_v2.0_Chr2g0110941 Rosa chinensis HOM05D005482 ORTHO05D006502 1.6e-144 517.3 601 56.4
Manes.12G125300 Manihot esculenta HOM05D005482 ORTHO05D006502 1.1e-143 514.6 627 50.7
Nitab4.5_0000128g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 1.1e-143 514.6 633 51.2
Cpa.g.sc55.13 Carica papaya HOM05D005482 ORTHO05D006502 1.4e-143 514.2 630 55.9
TWI74G1080 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 1.4e-143 514.2 632 49.7
CAN.G581.10 Capsicum annuum HOM05D005482 ORTHO05D006502 8.9e-143 511.5 630 49.5
PGSC0003DMG400014586 Solanum tuberosum HOM05D005482 ORTHO05D006502 8.9e-143 511.5 634 49.4
Nitab4.5_0007769g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 7.6e-142 508.4 627 50.9
CANSAT01G3178 Cannabis sativa HOM05D005482 ORTHO05D006502 2.9e-141 506.5 705 45.8
CsaV3_6G044940 Cucumis sativus L. HOM05D005482 ORTHO05D006502 3.8e-141 506.1 634 48.7
Cc07_g13970 Coffea canephora HOM05D005482 ORTHO05D006502 1.9e-140 503.8 632 49.8
Potri.007G011800 Populus trichocarpa HOM05D005482 ORTHO05D006502 9.2e-140 501.5 626 48.9
ClCG01G018310 Citrullus lanatus HOM05D005482 ORTHO05D006502 4.6e-139 499.2 630 50.2
Haze_03890 Corylus avellana HOM05D005482 ORTHO05D006502 4.6e-139 499.2 475 57.9
FAN26G3253 Fragaria x ananassa HOM05D005482 ORTHO05D006502 4.6e-139 499.2 604 51.2
Peaxi162Scf01142g00001 Petunia axillaris HOM05D005482 ORTHO05D006502 9.6e-137 491.5 634 48.6
Lj2A532G30 Lonicera japonica HOM05D005482 ORTHO05D006502 6.9e-135 485.3 623 46.9
MSTRG.23386 Avicennia marina HOM05D005482 ORTHO05D006502 8.4e-133 478.4 640 47.3
Sopen05g029760 Solanum pennellii HOM05D005482 ORTHO05D006502 8.4e-133 478.4 728 44.4
THA.LOC104798625 Tarenaya hassleriana HOM05D005482 ORTHO05D006502 1.9e-132 477.2 631 46.4
Solyc05g051370.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 2.4e-132 476.9 728 43.8
SGA_v2.0_scaffold108G30927 Striga asiatica HOM05D005482 ORTHO05D006502 1.9e-129 467.2 661 45.4
Sabra07G0009200 Salix brachista HOM05D005482 ORTHO05D006502 3.6e-128 463.0 643 45.6
Sc03g0000430 Simmondsia chinensis HOM05D005482 ORTHO05D006502 8.1e-128 461.8 632 46.7
Aa31LG3G16620 Aethionema arabicum HOM05D005482 ORTHO05D006502 1.5e-126 457.6 635 47.1
Lalb_Chr16g0381591 Lupinus albus HOM05D005482 ORTHO05D006502 2.0e-126 457.2 632 45.6
MELO3C007709.2 Cucumis melo HOM05D005482 ORTHO05D006502 7.6e-126 455.3 592 48.5
PGR102G1704 Punica granatum HOM05D005482 ORTHO05D006502 2.9e-125 453.4 631 45.8
EL10Ac6g15187 Beta vulgaris HOM05D005482 ORTHO05D006502 1.9e-124 450.7 625 47.8
arahy.Tifrunner.gnm1.ann1.52LQAS Arachis hypogaea HOM05D005482 ORTHO05D006502 3.2e-124 449.9 682 42.8
arahy.Tifrunner.gnm1.ann1.HVQN9F Arachis hypogaea HOM05D005482 ORTHO05D006502 3.2e-124 449.9 682 42.8
DCAR_003442 Daucus carota HOM05D005482 ORTHO05D006502 2.5e-121 440.3 640 45.0
CARHR279520 Cardamine hirsuta HOM05D005482 ORTHO05D006502 1.3e-120 438.0 634 44.3
AT5G65540 Arabidopsis thaliana HOM05D005482 ORTHO05D006502 1.6e-120 437.6 640 44.1
Thhalv10003865m.g Eutrema salsugineum HOM05D005482 ORTHO05D006502 8.1e-120 435.3 636 44.2
HanXRQChr12g0368991 Helianthus annuus HOM05D005482 ORTHO05D006502 6.9e-119 432.2 654 44.6
Carub.0008s2640 Capsella rubella HOM05D005482 ORTHO05D006502 1.2e-118 431.4 638 43.7
Hund16521 Selenicereus undatus HOM05D005482 ORTHO05D006502 3.4e-118 429.9 629 44.7
AL8G43140 Arabidopsis lyrata HOM05D005482 ORTHO05D006502 1.3e-117 427.9 639 43.7
AUR62017985 Chenopodium quinoa HOM05D005482 ORTHO05D006502 1.3e-117 427.9 624 44.4
Actinidia24562 Actinidia chinensis HOM05D005482 ORTHO05D006502 1.7e-117 427.6 410 58.8
Ah.03g139850 Amaranthus hybridus HOM05D005482 ORTHO05D006502 2.2e-117 427.2 614 46.1
Sp2g28640 Schrenkiella parvula HOM05D005482 ORTHO05D006502 6.4e-117 425.6 638 43.3
Oeu042113.2 Olea europaea HOM05D005482 ORTHO05D006502 3.2e-116 423.3 648 45.2
Atru.chr3.678 Acer truncatum HOM05D005482 ORTHO05D006502 4.2e-116 422.9 643 44.5
Ciclev10025202m.g Citrus clementina HOM05D005482 ORTHO05D006502 1.2e-115 421.4 663 41.6
Atru.chr3.724 Acer truncatum HOM05D005482 ORTHO05D006502 2.1e-115 420.6 643 44.3
Migut.H02285 Erythranthe guttata HOM05D005482 ORTHO05D006502 7.9e-115 418.7 664 43.1
BraA06t26164Z Brassica rapa HOM05D005482 ORTHO05D006502 9.6e-113 411.8 639 44.4
A06p32390 Brassica napus HOM05D005482 ORTHO05D006502 8.2e-112 408.7 639 44.3
Sabra15G0071300 Salix brachista HOM05D005482 ORTHO05D006502 5.3e-111 406.0 620 43.2
C03p60440 Brassica napus HOM05D005482 ORTHO05D006502 6.9e-111 405.6 638 42.6
BolC3t18305H Brassica oleracea HOM05D005482 ORTHO05D006502 6.9e-111 405.6 638 42.6
Glyma.09G200000 Glycine max HOM05D005482 ORTHO05D006502 1.4e-108 397.9 637 43.5
HPP92_017563 Vanilla planifolia HOM05D005482 ORTHO05D006502 4.2e-108 396.4 629 42.8
VMungo1215G0139 Vigna mungo HOM05D005482 ORTHO05D006502 4.2e-108 396.4 630 41.7
Ca_25228_v3 Cicer arietinum L. HOM05D005482 ORTHO05D006502 5.5e-108 396.0 626 42.5
Psat3g169840 Pisum sativum HOM05D005482 ORTHO05D006502 6.0e-107 392.5 630 42.5
Lj2g0006088 Lotus japonicus HOM05D005482 ORTHO05D006502 2.3e-106 390.6 663 41.2
SalBow3G1020 Salvia bowleyana HOM05D005482 ORTHO05D006502 1.9e-105 387.5 538 46.1
Lsat_1_v5_gn_3_62981 Lactuca sativa HOM05D005482 ORTHO05D006502 9.7e-105 385.2 648 40.4
Phvul.002G145800 Phaseolus vulgaris HOM05D005482 ORTHO05D006502 1.4e-100 371.3 634 40.7
Glyma.01G021600 Glycine max HOM05D005482 ORTHO05D006502 1.9e-100 370.9 640 39.8
ECA246G0291 Erigeron canadensis HOM05D005482 ORTHO05D006502 6.5e-93 345.9 473 44.6
Os03g0802300 Oryza sativa ssp. japonica HOM05D005482 ORTHO05D006502 4.7e-91 339.7 542 43.4
Zm00001eb061260 Zea mays HOM05D005482 ORTHO05D006502 1.8e-90 337.8 719 37.0
Medtr5g031750 Medicago truncatula HOM05D005482 ORTHO05D006502 4.4e-89 333.2 626 38.2
BcaC01g02786 Brassica carinata HOM05D005482 ORTHO05D006502 8.8e-82 308.9 674 37.1
unitig_736.g22591 Utricularia gibba HOM05D005482 ORTHO05D006502 2.9e-77 293.9 589 38.0
Oeu017109.1 Olea europaea HOM05D005482 ORTHO05D006502 1.5e-76 291.6 436 44.5
GSVIVG01002660001 Vitis vinifera HOM05D005482 ORTHO05D006502 8.0e-75 285.8 233 67.0
Hma1.2p1_0369F.1_g137390 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 9.7e-73 278.9 370 50.3
TAR381G1343 Trochodendron aralioides HOM05D005482 ORTHO05D006502 6.3e-64 249.6 277 59.9
ATR0767G089 Amborella trichopoda HOM05D005482 ORTHO05D006502 1.6e-59 235.0 272 46.7
TPR.G36831 Trifolium pratense HOM05D005482 ORTHO05D006502 1.6e-54 218.4 451 35.9
GSVIVG01002523001 Vitis vinifera HOM05D005482 ORTHO05D006502 2.3e-50 204.5 324 40.1
CDE07G0659 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 9.5e-44 182.6 201 50.7
Pp3c20_16050 Physcomitrium patens HOM05D005482 ORTHO05D006502 1.1e-36 159.1 573 26.4
BolC3t18285H Brassica oleracea HOM05D005482 ORTHO05D006502 4.1e-31 140.6 181 45.9
Oeu017110.1 Olea europaea HOM05D005482 ORTHO05D006502 1.9e-28 131.7 151 55.0
ECA246G4867 Erigeron canadensis HOM05D005482 ORTHO05D006502 1.6e-27 128.6 139 56.1
Actinidia28819 Actinidia chinensis HOM05D000138 ORTHO05D000078 8.1e-27 126.3 506 27.9
TPR.G7258 Trifolium pratense HOM05D005482 ORTHO05D006502 1.1e-26 125.9 294 31.6
C03p60240 Brassica napus HOM05D005482 ORTHO05D006502 1.5e-25 122.1 186 42.5
BcaC01g02797 Brassica carinata HOM05D005482 ORTHO05D006502 1.4e-23 115.5 134 48.5
TAR375G0200 Trochodendron aralioides HOM05D005482 ORTHO05D006502 9.3e-23 112.8 93 71.0
CDE07G1566 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 1.6e-19 102.1 162 44.4
Haze_03887 Corylus avellana HOM05D005482 ORTHO05D006502 3.1e-18 97.8 160 38.8
SMO203G0252 Selaginella moellendorffii HOM05D005482 ORTHO05D006502 5.8e-17 93.6 486 23.0
Mapoly0105s0033 Marchantia polymorpha HOM05D005482 ORTHO05D006502 7.6e-17 93.2 607 22.6
Solyc11g016980.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 2.2e-16 91.7 114 46.5
ATR0767G001 Amborella trichopoda HOM05D005482 ORTHO05D006502 7.1e-15 86.7 154 40.3
AagrBONN_evm.TU.Sc2ySwM_117.475 Anthoceros agrestis HOM05D005482 ORTHO05D006502 7.1e-15 86.7 632 24.5
CDE07G1819 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 1.2e-14 85.9 90 46.7
CDE07G2034 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 1.2e-14 85.9 49 77.6
BcaB04g20020 Brassica carinata HOM05D005482 ORTHO05D006502 3.0e-13 81.3 67 56.7
RcHm_v2.0_Chr2g0110871 Rosa chinensis HOM05D005482 ORTHO05D006502 8.7e-13 79.7 88 47.7
CiPaw.10G105100 Carya illinoinensis HOM05D005482 ORTHO05D006502 1.9e-12 78.6 49 67.3
CiPaw.03G215800 Carya illinoinensis HOM05D005482 ORTHO05D006502 2.8e-11 74.7 46 67.4
CiPaw.01G172300 Carya illinoinensis HOM05D005482 ORTHO05D006502 4.8e-11 73.9 49 63.3
Solyc02g062815.1 Solanum lycopersicum HOM05D005482 ORTHO05D006502 1.4e-07 62.4 62 50.0
Sabra15G0079600 Salix brachista HOM05D005482 ORTHO05D006502 6.0e-06 57.0 49 51.0
Solyc01g056590.2 Solanum lycopersicum HOM05D005482 ORTHO05D006502 7.9e-06 56.6 146 28.8


User provided reference genes

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