Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G01096 Aquilegia oxysepala HOM05D008303 ORTHO05D010386 1.5e-63 246.1 130 100.0
Nn6g31905 Nelumbo nucifera HOM05D008303 ORTHO05D010386 1.4e-29 133.3 135 54.1
Potri.004G178500 Populus trichocarpa HOM05D008303 ORTHO05D010386 2.3e-24 115.9 131 51.9
Rhsim11G0193900 Rhododendron simsii HOM05D008303 ORTHO05D010386 3.9e-24 115.2 131 54.2
Manes.04G070400 Manihot esculenta HOM05D008303 ORTHO05D010386 3.3e-23 112.1 130 54.6
Potri.009G138700 Populus trichocarpa HOM05D008303 ORTHO05D010386 9.5e-23 110.5 129 48.8
Sabra04G0120100 Salix brachista HOM05D008303 ORTHO05D010386 9.5e-23 110.5 132 49.2
Thecc.02G054500 Theobroma cacao HOM05D008303 ORTHO05D010386 1.2e-22 110.2 126 51.6
Manes.04G070500 Manihot esculenta HOM05D008303 ORTHO05D010386 2.1e-22 109.4 130 54.6
QL11p052465 Quercus lobata HOM05D008303 ORTHO05D010386 4.0e-21 105.1 119 52.1
COL.COLO4_36726 Corchorus olitorius HOM05D008303 ORTHO05D010386 3.4e-20 102.1 123 48.8
COL.COLO4_36725 Corchorus olitorius HOM05D008303 ORTHO05D010386 4.9e-19 98.2 127 48.0
Haze_02095 Corylus avellana HOM05D008303 ORTHO05D010386 1.1e-18 97.1 122 46.7
Oeu015521.1 Olea europaea HOM05D008303 ORTHO05D010386 1.4e-18 96.7 127 47.2
Ciclev10030089m.g Citrus clementina HOM05D008303 ORTHO05D010386 4.2e-18 95.1 137 47.4
Cfa005292 Carpinus fangiana HOM05D008303 ORTHO05D010386 5.4e-18 94.7 122 46.7
Sabra09G0107400 Salix brachista HOM05D008303 ORTHO05D010386 7.1e-18 94.4 126 46.8
Dinv14130 Davidia involucrata HOM05D001535 ORTHO05D003710 2.7e-17 92.4 91 58.2
Gohir.D01G161900 Gossypium hirsutum HOM05D008303 ORTHO05D010386 3.5e-17 92.0 127 48.8
Gorai.005G255400 Gossypium raimondii HOM05D008303 ORTHO05D010386 3.5e-17 92.0 131 48.1
Gorai.002G200800 Gossypium raimondii HOM05D008303 ORTHO05D010386 6.0e-17 91.3 127 48.8
Gohir.A03G206100 Gossypium hirsutum HOM05D008303 ORTHO05D010386 7.8e-17 90.9 131 48.9
Gohir.D02G227500 Gossypium hirsutum HOM05D008303 ORTHO05D010386 1.0e-16 90.5 131 47.3
Gohir.A01G170900 Gossypium hirsutum HOM05D008303 ORTHO05D010386 5.1e-16 88.2 128 46.9
Migut.B00055 Erythranthe guttata HOM05D008303 ORTHO05D010386 8.7e-16 87.4 130 49.2
Sopen01g053870 Solanum pennellii HOM05D008303 ORTHO05D010386 8.7e-16 87.4 119 47.9
Nitab4.5_0009111g0020 Nicotiana tabacum HOM05D008303 ORTHO05D010386 1.5e-15 86.7 126 50.8
Nitab4.5_0004867g0100 Nicotiana tabacum HOM05D008303 ORTHO05D010386 2.5e-15 85.9 133 48.1
MSTRG.5463 Avicennia marina HOM05D008303 ORTHO05D010386 4.3e-15 85.1 130 45.4
EL10Ac9g21335 Beta vulgaris HOM05D008303 ORTHO05D010386 8.1e-14 80.9 126 44.4
Sed0009685 Sechium edule HOM05D008303 ORTHO05D010386 1.2e-12 77.0 115 45.2
ClCG02G003900 Citrullus lanatus HOM05D008303 ORTHO05D010386 1.5e-12 76.6 117 44.4
CsaV3_7G001230 Cucumis sativus L. HOM05D008303 ORTHO05D010386 2.0e-12 76.3 115 42.6
Ah.01g023280 Amaranthus hybridus HOM05D008303 ORTHO05D010386 3.4e-12 75.5 128 42.2
QL11p052446 Quercus lobata HOM05D008303 ORTHO05D010386 7.6e-12 74.3 108 43.5
MELO3C013332.2 Cucumis melo HOM05D008303 ORTHO05D010386 9.9e-12 73.9 115 45.2
Prupe.8G169600 Prunus persica HOM05D008303 ORTHO05D010386 1.7e-11 73.2 83 54.2
arahy.Tifrunner.gnm1.ann1.DC2STY Arachis hypogaea HOM05D008303 ORTHO05D010386 2.2e-11 72.8 111 42.3
Sc18g0006250 Simmondsia chinensis HOM05D008303 ORTHO05D010386 4.9e-11 71.6 134 43.3
Cpa.g.sc20.118 Carica papaya HOM05D008303 ORTHO05D010386 1.1e-10 70.5 154 39.6
Migut.N01334 Erythranthe guttata HOM05D008303 ORTHO05D010386 1.1e-10 70.5 128 40.6
Ah.01g008130 Amaranthus hybridus HOM05D008303 ORTHO05D010386 7.1e-10 67.8 125 39.2
AUR62012998 Chenopodium quinoa HOM05D008303 ORTHO05D010386 1.6e-09 66.6 122 36.1
Atru.chr5.3448 Acer truncatum HOM05D008303 ORTHO05D010386 2.1e-09 66.2 156 37.2
Ciclev10030098m.g Citrus clementina HOM05D008303 ORTHO05D010386 2.7e-09 65.9 88 45.5
CiPaw.06G120000 Carya illinoinensis HOM05D008303 ORTHO05D010386 4.6e-09 65.1 141 36.2
AUR62010007 Chenopodium quinoa HOM05D008303 ORTHO05D010386 1.0e-08 63.9 120 43.3
Glyma.10G283700 Glycine max HOM05D008303 ORTHO05D010386 1.3e-08 63.5 92 46.7
PGSC0003DMG400018640 Solanum tuberosum HOM05D008303 ORTHO05D010386 1.7e-08 63.2 76 53.9
Nn5g30847 Nelumbo nucifera HOM05D008303 ORTHO05D010386 5.1e-08 61.6 85 44.7
SGA_v2.0_scaffold195G40814 Striga asiatica HOM05D008303 ORTHO05D010386 5.1e-08 61.6 112 40.2
VMungo0720G2805 Vigna mungo HOM05D008303 ORTHO05D010386 5.1e-08 61.6 104 40.4
AUR62010008 Chenopodium quinoa HOM05D003374 ORTHO05D010386 6.6e-08 61.2 127 38.6
Lsat_1_v5_gn_4_72180 Lactuca sativa HOM05D019391 ORTHO05D022529 1.5e-07 60.1 102 37.3
Lsat_1_v5_gn_4_72380 Lactuca sativa HOM05D019391 ORTHO05D022529 3.3e-07 58.9 106 41.5
Glyma.20G106100 Glycine max HOM05D008303 ORTHO05D010386 5.6e-07 58.2 126 38.9
SGA_v2.0_scaffold58G20342 Striga asiatica HOM05D008303 ORTHO05D010386 5.6e-07 58.2 133 37.6
Lsat_1_v5_gn_4_72220 Lactuca sativa HOM05D019391 ORTHO05D022529 7.3e-07 57.8 102 36.3
Os02g0667100 Oryza sativa ssp. japonica HOM05D036800 ORTHO05D037100 9.6e-07 57.4 113 36.3
DCAR_003193 Daucus carota HOM05D052813 ORTHO05D010386 1.3e-06 57.0 111 38.7
arahy.Tifrunner.gnm1.ann1.5P9XPP Arachis hypogaea HOM05D008303 ORTHO05D010386 2.1e-06 56.2 91 39.6
EL10Ac9g21334 Beta vulgaris HOM05D008303 ORTHO05D010386 3.6e-06 55.5 117 34.2
Lsat_1_v5_gn_7_46500 Lactuca sativa HOM05D019391 ORTHO05D022529 3.6e-06 55.5 106 39.6
Lsat_1_v5_gn_4_72161 Lactuca sativa HOM05D005570 ORTHO05D007368 6.2e-06 54.7 90 35.6
Phvul.007G017600 Phaseolus vulgaris HOM05D008303 ORTHO05D010386 6.2e-06 54.7 90 42.2
Zm00001eb186940 Zea mays HOM05D036800 ORTHO05D037100 6.2e-06 54.7 133 33.1


User provided reference genes

Program Settings