Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G01031 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 2.6e-158 562.0 287 100.0
TAR625G1504 Trochodendron aralioides HOM05D003937 ORTHO05D004583 6.3e-59 231.9 295 48.8
Nn5g30963 Nelumbo nucifera HOM05D003937 ORTHO05D004583 5.5e-55 218.8 298 48.7
TAR381G0291 Trochodendron aralioides HOM05D003937 ORTHO05D004583 1.3e-51 207.6 290 45.9
PSO541G3051 Papaver somniferum HOM05D003937 ORTHO05D004583 1.6e-46 190.7 272 47.8
PSO675G5999 Papaver somniferum HOM05D003937 ORTHO05D004583 1.5e-44 184.1 270 47.0
Aqoxy6G01687 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 2.2e-40 170.2 265 44.2
Dinv41880 Davidia involucrata HOM05D001927 ORTHO05D001972 1.5e-39 167.5 294 41.5
Hma1.2p1_0271F.1_g108900 Hydrangea macrophylla HOM05D003937 ORTHO05D004583 1.9e-39 167.2 301 40.9
CSS0036568 Camellia sinensis var. sinensis HOM05D003937 ORTHO05D004583 2.5e-39 166.8 263 43.0
TWI75G1612 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 4.7e-38 162.5 262 43.1
Dinv14164 Davidia involucrata HOM05D001927 ORTHO05D001972 2.6e-36 156.8 260 44.2
Manes.04G067300 Manihot esculenta HOM05D003937 ORTHO05D004583 3.4e-36 156.4 274 41.6
MD05G1134400 Malus domestica HOM05D003937 ORTHO05D004583 2.2e-35 153.7 261 44.4
arahy.Tifrunner.gnm1.ann1.388DF8 Arachis hypogaea HOM05D003937 ORTHO05D004583 4.8e-35 152.5 271 40.2
CiPaw.05G091700 Carya illinoinensis HOM05D003937 ORTHO05D004583 1.8e-34 150.6 275 39.6
arahy.Tifrunner.gnm1.ann1.G18Z51 Arachis hypogaea HOM05D003937 ORTHO05D004583 3.1e-34 149.8 271 39.5
EL10Ac9g21245 Beta vulgaris HOM05D003937 ORTHO05D004583 4.1e-34 149.4 286 38.1
Glyma.06G000500 Glycine max HOM05D003937 ORTHO05D004583 7.0e-34 148.7 261 39.5
AUR62011702 Chenopodium quinoa HOM05D003937 ORTHO05D004583 1.6e-33 147.5 263 39.9
Cpa.g.sc20.204 Carica papaya HOM05D003937 ORTHO05D004583 5.9e-33 145.6 283 38.5
Duzib132G1231 Durio zibethinus HOM05D003937 ORTHO05D004583 7.7e-33 145.2 290 37.2
Cfa005351 Carpinus fangiana HOM05D003937 ORTHO05D004583 1.0e-32 144.8 242 44.2
Thecc.02G044800 Theobroma cacao HOM05D003937 ORTHO05D004583 3.8e-32 142.9 300 38.7
Sc18g0006030 Simmondsia chinensis HOM05D003937 ORTHO05D004583 5.0e-32 142.5 279 38.4
Gohir.A03G209600 Gossypium hirsutum HOM05D003937 ORTHO05D004583 6.5e-32 142.1 294 39.1
Haze_02016 Corylus avellana HOM05D003937 ORTHO05D004583 8.5e-32 141.7 241 43.2
Atru.chr5.3549 Acer truncatum HOM05D003937 ORTHO05D004583 1.5e-31 141.0 291 38.8
Gohir.D01G166000 Gossypium hirsutum HOM05D003937 ORTHO05D004583 1.9e-31 140.6 279 37.6
Gorai.002G206500 Gossypium raimondii HOM05D003937 ORTHO05D004583 1.9e-31 140.6 279 37.6
Phvul.006G042500 Phaseolus vulgaris HOM05D003937 ORTHO05D004583 1.9e-31 140.6 258 41.9
AUR62012919 Chenopodium quinoa HOM05D003937 ORTHO05D004583 2.5e-31 140.2 267 40.1
Duzib052G0838 Durio zibethinus HOM05D003937 ORTHO05D004583 2.5e-31 140.2 293 39.2
Ciclev10028873m.g Citrus clementina HOM05D003937 ORTHO05D004583 3.2e-31 139.8 273 39.6
Gohir.D02G231300 Gossypium hirsutum HOM05D003937 ORTHO05D004583 4.2e-31 139.4 294 38.8
VMungo0540G0354 Vigna mungo HOM05D003937 ORTHO05D004583 9.4e-31 138.3 262 37.8
Gohir.A01G174900 Gossypium hirsutum HOM05D003937 ORTHO05D004583 1.2e-30 137.9 301 39.2
Glyma.04G000700 Glycine max HOM05D003937 ORTHO05D004583 3.6e-30 136.3 260 38.5
TPR.G38537 Trifolium pratense HOM05D003937 ORTHO05D004583 3.6e-30 136.3 256 41.0
MD10G1139500 Malus domestica HOM05D003937 ORTHO05D004583 4.7e-30 136.0 268 41.8
COL.COLO4_17933 Corchorus olitorius HOM05D003937 ORTHO05D004583 1.2e-28 131.3 294 39.1
Medtr3g118500 Medicago truncatula HOM05D003937 ORTHO05D004583 2.0e-28 130.6 254 38.2
Gorai.005G258900 Gossypium raimondii HOM05D003937 ORTHO05D004583 2.6e-28 130.2 294 37.4
Actinidia32012 Actinidia chinensis HOM05D003937 ORTHO05D004583 5.7e-28 129.0 304 35.2
Eucgr.I01517 Eucalyptus grandis HOM05D003937 ORTHO05D004583 7.5e-28 128.6 285 34.4
Potri.009G166100 Populus trichocarpa HOM05D003937 ORTHO05D004583 1.3e-27 127.9 291 36.4
vmacro17300 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 2.2e-27 127.1 278 35.3
Ca_16692_v3 Cicer arietinum L. HOM05D003937 ORTHO05D004583 2.8e-27 126.7 216 44.0
Lalb_Chr08g0246851 Lupinus albus HOM05D003937 ORTHO05D004583 2.8e-27 126.7 247 41.7
Hund06165 Selenicereus undatus HOM05D003937 ORTHO05D004583 3.7e-27 126.3 250 36.8
Actinidia37917 Actinidia chinensis HOM05D003937 ORTHO05D004583 4.8e-27 125.9 283 35.0
TWI79G1491 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 1.1e-26 124.8 243 37.4
PGR142G1962 Punica granatum HOM05D003937 ORTHO05D004583 2.4e-26 123.6 289 37.4
QL11p055606 Quercus lobata HOM05D003937 ORTHO05D004583 4.1e-26 122.9 267 37.8
QL11p055907 Quercus lobata HOM05D003937 ORTHO05D004583 4.1e-26 122.9 266 37.2
Lj1g0000413 Lotus japonicus HOM05D003937 ORTHO05D004583 5.4e-26 122.5 262 38.2
Rhsim05G0047600 Rhododendron simsii HOM05D003937 ORTHO05D004583 5.4e-26 122.5 259 36.3
CANSAT25G1327 Cannabis sativa HOM05D003937 ORTHO05D004583 7.0e-26 122.1 273 35.9
Prupe.8G178200 Prunus persica HOM05D003937 ORTHO05D004583 7.0e-26 122.1 266 36.5
Lj4A806T76 Lonicera japonica HOM05D003937 ORTHO05D004583 1.3e-24 117.9 281 34.5
ClCG02G009960 Citrullus lanatus HOM05D003937 ORTHO05D004583 1.7e-24 117.5 281 37.0
Cc10_g00590 Coffea canephora HOM05D003937 ORTHO05D004583 2.9e-24 116.7 276 35.5
CAN.G311.122 Capsicum annuum HOM05D003937 ORTHO05D004583 8.6e-24 115.2 272 33.5
Cfa014094 Carpinus fangiana HOM05D003937 ORTHO05D004583 1.5e-23 114.4 257 34.2
Sopen01g054230 Solanum pennellii HOM05D003937 ORTHO05D004583 1.5e-23 114.4 286 32.9
Prupe.5G011500 Prunus persica HOM05D003937 ORTHO05D004583 2.5e-23 113.6 283 33.6
arahy.Tifrunner.gnm1.ann1.13SVP6 Arachis hypogaea HOM05D003937 ORTHO05D004583 3.3e-23 113.2 216 38.0
arahy.Tifrunner.gnm1.ann1.BKYH70 Arachis hypogaea HOM05D003937 ORTHO05D004583 4.2e-23 112.8 256 36.3
Rhsim07G0256300 Rhododendron simsii HOM05D003937 ORTHO05D004583 5.5e-23 112.5 278 36.7
Solyc01g112180.4 Solanum lycopersicum HOM05D003937 ORTHO05D004583 5.5e-23 112.5 286 32.9
Sed0010938 Sechium edule HOM05D003937 ORTHO05D004583 9.5e-23 111.7 254 35.0
Peaxi162Scf00362g00245 Petunia axillaris HOM05D003937 ORTHO05D004583 1.6e-22 110.9 280 31.8
PGSC0003DMG400014661 Solanum tuberosum HOM05D003937 ORTHO05D004583 1.6e-22 110.9 276 33.7
Oeu033835.1 Olea europaea HOM05D003937 ORTHO05D004583 2.8e-22 110.2 264 35.2
GSVIVG01026659001 Vitis vinifera HOM05D003937 ORTHO05D004583 4.7e-22 109.4 133 51.1
Nitab4.5_0000588g0020 Nicotiana tabacum HOM05D003937 ORTHO05D004583 8.0e-22 108.6 296 33.4
Potri.004G205200 Populus trichocarpa HOM05D003937 ORTHO05D004583 8.0e-22 108.6 264 36.0
Solyc04g082450.3 Solanum lycopersicum HOM05D003937 ORTHO05D004583 8.0e-22 108.6 284 34.5
MSTRG.22102 Avicennia marina HOM05D003937 ORTHO05D004583 1.4e-21 107.8 293 31.4
vmacro04409 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 2.3e-21 107.1 269 37.9
Oeu046353.1 Olea europaea HOM05D003937 ORTHO05D004583 3.0e-21 106.7 281 33.5
Sopen04g036060 Solanum pennellii HOM05D003937 ORTHO05D004583 6.8e-21 105.5 284 33.1
MBI08_g12714_MAGBIO Magnolia biondii HOM05D003937 ORTHO05D004583 1.5e-20 104.4 135 49.6
Haze_22797 Corylus avellana HOM05D003937 ORTHO05D004583 2.0e-20 104.0 251 35.5
CAN.G1725.8 Capsicum annuum HOM05D003937 ORTHO05D004583 2.6e-20 103.6 256 33.2
CsaV3_6G010160 Cucumis sativus L. HOM05D003937 ORTHO05D004583 2.6e-20 103.6 283 35.0
Nn6g31719 Nelumbo nucifera HOM05D003937 ORTHO05D004583 2.6e-20 103.6 120 55.8
DCAR_015663 Daucus carota HOM05D003937 ORTHO05D004583 3.4e-20 103.2 234 36.8
MSTRG.24495 Avicennia marina HOM05D003937 ORTHO05D004583 4.4e-20 102.8 262 33.6
Oeu003435.2 Olea europaea HOM05D003937 ORTHO05D004583 4.4e-20 102.8 221 36.2
Nitab4.5_0011212g0050 Nicotiana tabacum HOM05D003937 ORTHO05D004583 5.7e-20 102.4 270 32.2
HPP92_021046 Vanilla planifolia HOM05D003937 ORTHO05D004583 9.8e-20 101.7 223 35.4
Aqoxy6G01688 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 1.3e-19 101.3 274 34.7
HanXRQChr12g0374421 Helianthus annuus HOM05D003937 ORTHO05D004583 1.7e-19 100.9 273 33.0
QL02p014402 Quercus lobata HOM05D003937 ORTHO05D004583 1.7e-19 100.9 234 35.5
SalBow6G3106 Salvia bowleyana HOM05D003937 ORTHO05D004583 2.2e-19 100.5 287 32.8
MD06G1009100 Malus domestica HOM05D003937 ORTHO05D004583 8.3e-19 98.6 263 33.5
Haze_22798 Corylus avellana HOM05D003937 ORTHO05D004583 1.4e-18 97.8 245 33.1
Nitab4.5_0000783g0190 Nicotiana tabacum HOM05D003937 ORTHO05D004583 4.1e-18 96.3 264 31.8
SalBow1G5464 Salvia bowleyana HOM05D003937 ORTHO05D004583 1.2e-17 94.7 221 35.3
FvH4_5g25250 Fragaria vesca HOM05D003937 ORTHO05D004583 1.6e-17 94.4 263 31.9
DCAR_016775 Daucus carota HOM05D003937 ORTHO05D004583 3.5e-17 93.2 300 31.0
RcHm_v2.0_Chr7g0215391 Rosa chinensis HOM05D003937 ORTHO05D004583 3.5e-17 93.2 273 32.6
CDE05G2511 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 5.9e-17 92.4 238 34.0
arahy.Tifrunner.gnm1.ann1.2P21EX Arachis hypogaea HOM05D003937 ORTHO05D004583 7.8e-17 92.0 243 33.7
CDE05G1352 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 7.8e-17 92.0 224 35.3
FAN20G0177 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.0e-16 91.7 151 44.4
Sabra04G0138500 Salix brachista HOM05D003937 ORTHO05D004583 1.7e-16 90.9 248 33.1
PGSC0003DMG400009905 Solanum tuberosum HOM05D003937 ORTHO05D004583 1.7e-16 90.9 270 32.6
ECA233G2935 Erigeron canadensis HOM05D003937 ORTHO05D004583 2.3e-16 90.5 241 32.8
ECA246G4591 Erigeron canadensis HOM05D003937 ORTHO05D004583 2.3e-16 90.5 220 35.0
Migut.N02961 Erythranthe guttata HOM05D003937 ORTHO05D004583 2.3e-16 90.5 265 31.3
arahy.Tifrunner.gnm1.ann1.5851ZQ Arachis hypogaea HOM05D003937 ORTHO05D004583 2.9e-16 90.1 215 34.0
DCAR_013923 Daucus carota HOM05D003937 ORTHO05D004583 2.9e-16 90.1 272 32.4
FAN27G2747 Fragaria x ananassa HOM05D003937 ORTHO05D004583 3.9e-16 89.7 151 43.7
MSTRG.16955 Avicennia marina HOM05D003937 ORTHO05D004583 1.1e-15 88.2 213 31.5
FvH4_2g16620 Fragaria vesca HOM05D003937 ORTHO05D004583 1.1e-15 88.2 113 50.4
FAN15G3453 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.1e-15 88.2 113 50.4
FAN24G0691 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.1e-15 88.2 113 50.4
GSVIVG01009897001 Vitis vinifera HOM05D003937 ORTHO05D004583 1.5e-15 87.8 96 51.0
Os09g0549400 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 1.9e-15 87.4 95 52.6
Zm00001eb104250 Zea mays HOM05D003937 ORTHO05D004583 1.9e-15 87.4 98 51.0
Zm00001eb420050 Zea mays HOM05D003937 ORTHO05D004583 2.5e-15 87.0 198 36.9
Os04g0136900 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 4.3e-15 86.3 113 46.9
unitig_8.g3603 Utricularia gibba HOM05D000001 ORTHO05D000003 4.3e-15 86.3 234 33.3
Migut.B00012 Erythranthe guttata HOM05D003937 ORTHO05D004583 5.6e-15 85.9 311 29.3
CANSAT25G1278 Cannabis sativa HOM05D003937 ORTHO05D004583 7.3e-15 85.5 255 31.8
RcHm_v2.0_Chr6g0280681 Rosa chinensis HOM05D003937 ORTHO05D004583 1.6e-14 84.3 125 47.2
ATR0661G493 Amborella trichopoda HOM05D003937 ORTHO05D004583 2.8e-14 83.6 137 41.6
ECA233G5124 Erigeron canadensis HOM05D003937 ORTHO05D004583 4.7e-14 82.8 272 31.2
Lalb_Chr11g0061231 Lupinus albus HOM05D003937 ORTHO05D004583 4.7e-14 82.8 217 33.2
Psat5g000520 Pisum sativum HOM05D003937 ORTHO05D004583 4.7e-14 82.8 143 38.5
FAN04G2017 Fragaria x ananassa HOM05D003937 ORTHO05D004583 3.1e-13 80.1 240 32.1
FAN08G1258 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.5e-12 77.8 240 32.1
GSVIVG01023888001 Vitis vinifera HOM05D003937 ORTHO05D004583 2.6e-12 77.0 95 48.4
FAN18G0752 Fragaria x ananassa HOM05D003937 ORTHO05D004583 9.8e-12 75.1 242 30.6
Dinv31951 Davidia involucrata HOM05D003937 ORTHO05D004583 1.3e-11 74.7 106 47.2
SGA_v2.0_scaffold32G13344 Striga asiatica HOM05D003937 ORTHO05D004583 2.2e-11 73.9 235 32.3
HPP92_020992 Vanilla planifolia HOM05D003937 ORTHO05D004583 6.4e-11 72.4 201 31.3
Lj5P172T81 Lonicera japonica HOM05D003937 ORTHO05D004583 8.3e-11 72.0 178 35.4
CDE06G0218 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 1.9e-10 70.9 95 44.2
SEGI_28645 Sequoiadendron giganteum HOM05D003937 ORTHO05D004583 3.2e-10 70.1 175 34.9
Lsat_1_v5_gn_8_26360 Lactuca sativa HOM05D003937 ORTHO05D004583 4.1e-10 69.7 98 41.8
Lsat_1_v5_gn_3_48780 Lactuca sativa HOM05D003937 ORTHO05D004583 5.4e-10 69.3 192 32.8
HanXRQChr13g0409731 Helianthus annuus HOM05D003937 ORTHO05D004583 7.0e-10 68.9 85 45.9
Pp3c19_6980 Physcomitrium patens HOM05D003937 ORTHO05D004583 2.7e-09 67.0 84 47.6
CDE06G2177 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 1.3e-08 64.7 82 48.8
SMO347G0358 Selaginella moellendorffii HOM05D003937 ORTHO05D004583 1.3e-08 64.7 116 39.7
SGA_v2.0_scaffold364G49977 Striga asiatica HOM05D003937 ORTHO05D004583 1.7e-08 64.3 132 40.2
AagrBONN_evm.TU.Sc2ySwM_117.297 Anthoceros agrestis HOM05D003937 ORTHO05D004583 2.3e-08 63.9 145 32.4
Mapoly0074s0020 Marchantia polymorpha HOM05D003937 ORTHO05D004583 2.3e-08 63.9 152 35.5
HanXRQChr12g0367561 Helianthus annuus HOM05D003937 ORTHO05D004583 3.0e-08 63.5 96 39.6
arahy.Tifrunner.gnm1.ann1.X4XIB4 Arachis hypogaea HOM05D003937 ORTHO05D004583 6.6e-08 62.4 177 32.8
CsaV3_6G031550 Cucumis sativus L. HOM05D003937 ORTHO05D004583 3.3e-07 60.1 240 27.1
MELO3C026537.2 Cucumis melo HOM05D003937 ORTHO05D004583 7.3e-07 58.9 241 26.6
Aa31LG6G16740 Aethionema arabicum HOM05D003937 ORTHO05D004583 2.8e-06 57.0 233 28.3
Thhalv10026442m.g Eutrema salsugineum HOM05D003937 ORTHO05D004583 2.8e-06 57.0 140 36.4
AL7G10200 Arabidopsis lyrata HOM05D003937 ORTHO05D004583 3.6e-06 56.6 68 44.1
CiPaw.07G137900 Carya illinoinensis HOM05D003937 ORTHO05D004583 3.6e-06 56.6 134 31.3
AT2G45250 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 4.7e-06 56.2 68 44.1
Sed0014450 Sechium edule HOM05D003937 ORTHO05D004583 4.7e-06 56.2 250 24.8


User provided reference genes

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