Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G01006 Aquilegia oxysepala HOM05D002477 ORTHO05D001927 2.9e-263 911.4 463 100.0
Gorai.001G100000 Gossypium raimondii HOM05D002477 ORTHO05D001927 8.7e-18 95.9 412 26.9
Gohir.A07G088300 Gossypium hirsutum HOM05D002477 ORTHO05D001927 1.1e-17 95.5 412 26.7
Gohir.D07G093300 Gossypium hirsutum HOM05D002477 ORTHO05D001927 3.3e-17 94.0 409 26.4
GSVIVG01030142001 Vitis vinifera HOM05D002477 ORTHO05D001927 4.3e-17 93.6 444 24.8
TAR626G0091 Trochodendron aralioides HOM05D002477 ORTHO05D001927 1.8e-15 88.2 164 37.8
Os11g0160700 Oryza sativa ssp. japonica HOM05D012665 ORTHO05D015176 3.4e-14 84.0 161 32.3
Nn1g07679 Nelumbo nucifera HOM05D002477 ORTHO05D001927 1.7e-13 81.6 123 36.6
Hund08100 Selenicereus undatus HOM05D002477 ORTHO05D001927 1.7e-13 81.6 73 53.4
Oeu051541.1 Olea europaea HOM05D002477 ORTHO05D001927 2.2e-13 81.3 112 40.2
AUR62037152 Chenopodium quinoa HOM05D002477 ORTHO05D001927 3.8e-13 80.5 67 55.2
Sc21g0000360 Simmondsia chinensis HOM05D002477 ORTHO05D001927 3.8e-13 80.5 449 26.5
CSS0027860 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 4.9e-13 80.1 404 25.0
Duzib133G1113 Durio zibethinus HOM05D002477 ORTHO05D001927 6.4e-13 79.7 431 24.8
ATR0757G170 Amborella trichopoda HOM05D002477 ORTHO05D001927 1.1e-12 79.0 77 54.5
AUR62025099 Chenopodium quinoa HOM05D002477 ORTHO05D001927 1.9e-12 78.2 67 55.2
Thecc.01G201900 Theobroma cacao HOM05D002477 ORTHO05D001927 1.9e-12 78.2 412 24.8
Actinidia35194 Actinidia chinensis HOM05D002477 ORTHO05D001927 2.4e-12 77.8 68 52.9
EL10Ac9g22351 Beta vulgaris HOM05D002477 ORTHO05D001927 4.2e-12 77.0 69 53.6
Cc05_g09830 Coffea canephora HOM05D002477 ORTHO05D001927 7.1e-12 76.3 75 50.7
ECA236G0694 Erigeron canadensis HOM05D002477 ORTHO05D001927 9.3e-12 75.9 398 23.1
vmacro09463 Vaccinium macrocarpon HOM05D002477 ORTHO05D001927 9.3e-12 75.9 227 31.7
Cpa.g.sc92.17 Carica papaya HOM05D002477 ORTHO05D001927 2.1e-11 74.7 193 28.0
CsaV3_7G002300 Cucumis sativus L. HOM05D002477 ORTHO05D001927 2.1e-11 74.7 85 41.2
Sed0002535 Sechium edule HOM05D002477 ORTHO05D001927 2.1e-11 74.7 73 47.9
Rhsim04G0100400 Rhododendron simsii HOM05D002477 ORTHO05D001927 2.7e-11 74.3 414 23.9
Prupe.3G192500 Prunus persica HOM05D002477 ORTHO05D001927 4.6e-11 73.6 394 24.4
CARHR209510 Cardamine hirsuta HOM05D010575 ORTHO05D001927 6.0e-11 73.2 66 56.1
CiPaw.03G284600 Carya illinoinensis HOM05D002477 ORTHO05D001927 6.0e-11 73.2 154 31.8
Zm00001eb210290 Zea mays HOM05D012665 ORTHO05D015176 6.0e-11 73.2 100 44.0
Lsat_1_v5_gn_9_103221 Lactuca sativa HOM05D002477 ORTHO05D001927 7.9e-11 72.8 93 38.7
Lsat_1_v5_gn_9_27420 Lactuca sativa HOM05D002477 ORTHO05D001927 1.0e-10 72.4 70 47.1
Actinidia38563 Actinidia chinensis HOM05D002477 ORTHO05D001927 1.3e-10 72.0 76 47.4
Aa31sc156G30 Aethionema arabicum HOM05D002477 ORTHO05D001927 1.3e-10 72.0 447 25.3
MELO3C024174.2 Cucumis melo HOM05D002477 ORTHO05D001927 1.3e-10 72.0 85 41.2
Os11g0482500 Oryza sativa ssp. japonica HOM05D012665 ORTHO05D015176 1.3e-10 72.0 80 45.0
Eucgr.K01371 Eucalyptus grandis HOM05D002477 ORTHO05D001927 1.8e-10 71.6 406 25.1
MD09G1134000 Malus domestica HOM05D002477 ORTHO05D001927 2.3e-10 71.2 74 44.6
ClCG02G003110 Citrullus lanatus HOM05D002477 ORTHO05D001927 3.0e-10 70.9 86 40.7
COL.COLO4_19698 Corchorus olitorius HOM05D002477 ORTHO05D001927 3.0e-10 70.9 112 35.7
ECA247G2430 Erigeron canadensis HOM05D002477 ORTHO05D001927 3.0e-10 70.9 70 45.7
Sp5g00980 Schrenkiella parvula HOM05D010575 ORTHO05D001927 3.0e-10 70.9 62 53.2
CSS0049780 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 3.9e-10 70.5 420 24.5
CAN.G585.14 Capsicum annuum HOM05D002477 ORTHO05D001927 3.9e-10 70.5 123 34.1
CDE02G3597 Ceratophyllum demersum HOM05D002477 ORTHO05D001927 3.9e-10 70.5 106 39.6
BraA06t26839Z Brassica rapa HOM05D001083 ORTHO05D001637 5.1e-10 70.1 64 51.6
Ciclev10004349m.g Citrus clementina HOM05D002477 ORTHO05D001927 5.1e-10 70.1 404 23.0
A06p39250 Brassica napus HOM05D001083 ORTHO05D001637 6.7e-10 69.7 64 51.6
BolC9t53397H Brassica oleracea HOM05D010575 ORTHO05D001927 8.7e-10 69.3 70 48.6
COL.COLO4_28664 Corchorus olitorius HOM05D002477 ORTHO05D001927 8.7e-10 69.3 197 29.9
FvH4_6g51680 Fragaria vesca HOM05D002477 ORTHO05D001927 8.7e-10 69.3 78 44.9
FAN14G3449 Fragaria x ananassa HOM05D002477 ORTHO05D001927 8.7e-10 69.3 78 44.9
DCAR_009054 Daucus carota HOM05D002477 ORTHO05D001927 1.1e-09 68.9 435 22.5
HanXRQChr11g0329911 Helianthus annuus HOM05D002477 ORTHO05D001927 1.1e-09 68.9 79 41.8
HanXRQChr15g0491211 Helianthus annuus HOM05D002477 ORTHO05D001927 1.1e-09 68.9 85 42.4
Nitab4.5_0007468g0010 Nicotiana tabacum HOM05D002477 ORTHO05D001927 1.1e-09 68.9 119 36.1
PGR044G1376 Punica granatum HOM05D002477 ORTHO05D001927 1.1e-09 68.9 88 39.8
TWI36G1687 Tripterygium wilfordii HOM05D002477 ORTHO05D001927 1.1e-09 68.9 391 25.6
Atru.chr6.3448 Acer truncatum HOM05D002477 ORTHO05D001927 1.5e-09 68.6 92 40.2
Peaxi162Scf00111g00528 Petunia axillaris HOM05D002477 ORTHO05D001927 1.5e-09 68.6 64 50.0
A09p04380 Brassica napus HOM05D010575 ORTHO05D001927 1.9e-09 68.2 70 47.1
BraA09t36075Z Brassica rapa HOM05D010575 ORTHO05D001927 1.9e-09 68.2 70 47.1
CANSAT80G2456 Cannabis sativa HOM05D002477 ORTHO05D001927 2.5e-09 67.8 124 35.5
FAN14G4953 Fragaria x ananassa HOM05D002477 ORTHO05D001927 2.5e-09 67.8 71 46.5
Nitab4.5_0001022g0060 Nicotiana tabacum HOM05D002477 ORTHO05D001927 2.5e-09 67.8 119 36.1
Potri.006G054401 Populus trichocarpa HOM05D002477 ORTHO05D001927 2.5e-09 67.8 73 49.3
QL02p026723 Quercus lobata HOM05D002477 ORTHO05D001927 2.5e-09 67.8 393 23.4
RcHm_v2.0_Chr2g0155231 Rosa chinensis HOM05D002477 ORTHO05D001927 2.5e-09 67.8 78 42.3
AL6G13330 Arabidopsis lyrata HOM05D010575 ORTHO05D001927 3.3e-09 67.4 112 38.4
Thhalv10004420m.g Eutrema salsugineum HOM05D010575 ORTHO05D001927 3.3e-09 67.4 281 28.1
Glyma.13G197800 Glycine max HOM05D002477 ORTHO05D001927 3.3e-09 67.4 67 46.3
BcaC06g30810 Brassica carinata HOM05D001083 ORTHO05D001637 4.3e-09 67.0 126 33.3
Carub.0006s0269 Capsella rubella HOM05D010575 ORTHO05D001927 4.3e-09 67.0 402 24.6
FvH4_6g40210 Fragaria vesca HOM05D002477 ORTHO05D001927 4.3e-09 67.0 67 44.8
FAN05G2298 Fragaria x ananassa HOM05D002477 ORTHO05D001927 4.3e-09 67.0 65 46.2
FAN09G2397 Fragaria x ananassa HOM05D002477 ORTHO05D001927 4.3e-09 67.0 65 46.2
Psat5g110680 Pisum sativum HOM05D002477 ORTHO05D001927 4.3e-09 67.0 71 45.1
Potri.002G005600 Populus trichocarpa HOM05D002477 ORTHO05D001927 4.3e-09 67.0 502 23.7
Sp2g18670 Schrenkiella parvula HOM05D010575 ORTHO05D001927 4.3e-09 67.0 400 24.0
C07p39090 Brassica napus HOM05D001083 ORTHO05D001637 5.6e-09 66.6 126 33.3
Lalb_Chr04g0259381 Lupinus albus HOM05D002477 ORTHO05D001927 5.6e-09 66.6 62 53.2
BolC7t44427H Brassica oleracea HOM05D001083 ORTHO05D001637 7.4e-09 66.2 126 33.3
ECA246G4940 Erigeron canadensis HOM05D002477 ORTHO05D001927 7.4e-09 66.2 61 47.5
Glyma.15G236400 Glycine max HOM05D002477 ORTHO05D001927 7.4e-09 66.2 90 38.9
Haze_17377 Corylus avellana HOM05D000475 ORTHO05D000343 9.6e-09 65.9 61 47.5
C03p01300 Brassica napus HOM05D010575 ORTHO05D001927 1.3e-08 65.5 86 46.5
BolC3t12689H Brassica oleracea HOM05D010575 ORTHO05D001927 1.3e-08 65.5 86 46.5
Ca_16324_v3 Cicer arietinum L. HOM05D002477 ORTHO05D001927 1.3e-08 65.5 74 44.6
Manes.09G026400 Manihot esculenta HOM05D002477 ORTHO05D001927 1.3e-08 65.5 277 25.3
SGA_v2.0_scaffold7G04035 Striga asiatica HOM05D001894 ORTHO05D001752 1.3e-08 65.5 121 29.8
VMungo1127G0424 Vigna mungo HOM05D002477 ORTHO05D001927 1.3e-08 65.5 74 44.6
DCAR_010045 Daucus carota HOM05D002477 ORTHO05D001927 1.6e-08 65.1 80 43.8
Nn3g19128 Nelumbo nucifera HOM05D002477 ORTHO05D001927 1.6e-08 65.1 399 24.3
Sopen07g029480 Solanum pennellii HOM05D002477 ORTHO05D001927 1.6e-08 65.1 132 32.6
TPR.G23127 Trifolium pratense HOM05D002477 ORTHO05D001927 1.6e-08 65.1 65 50.8
HPP92_005495 Vanilla planifolia HOM05D002477 ORTHO05D001927 1.6e-08 65.1 76 44.7
BcaB01g05861 Brassica carinata HOM05D010575 ORTHO05D001927 2.1e-08 64.7 86 46.5
AUR62024404 Chenopodium quinoa HOM05D002477 ORTHO05D001927 2.1e-08 64.7 65 52.3
Gohir.A11G146700 Gossypium hirsutum HOM05D002477 ORTHO05D001927 2.1e-08 64.7 112 33.0
Gohir.D11G153400 Gossypium hirsutum HOM05D002477 ORTHO05D001927 2.1e-08 64.7 112 33.0
Sabra06G0038500 Salix brachista HOM05D002477 ORTHO05D000502 2.1e-08 64.7 73 46.6
Cfa016855 Carpinus fangiana HOM05D002477 ORTHO05D001927 2.8e-08 64.3 72 44.4
AUR62025998 Chenopodium quinoa HOM05D002477 ORTHO05D001927 2.8e-08 64.3 71 47.9
Cc06_g16670 Coffea canephora HOM05D002477 ORTHO05D001927 2.8e-08 64.3 99 36.4
Gorai.007G163600 Gossypium raimondii HOM05D002477 ORTHO05D001927 2.8e-08 64.3 112 33.0
Potri.016G053300 Populus trichocarpa HOM05D002477 ORTHO05D001927 2.8e-08 64.3 170 32.4
QL93p2012_0015 Quercus lobata HOM05D002477 ORTHO05D001927 2.8e-08 64.3 128 31.2
QL93p2012_0041 Quercus lobata HOM05D002477 ORTHO05D001927 2.8e-08 64.3 128 31.2
SGA_v2.0_scaffold135G34972 Striga asiatica HOM05D002477 ORTHO05D001927 2.8e-08 64.3 76 42.1
Aqoxy3G04102 Aquilegia oxysepala HOM05D002477 ORTHO05D001927 3.7e-08 63.9 442 23.8
arahy.Tifrunner.gnm1.ann1.PI38UG Arachis hypogaea HOM05D002477 ORTHO05D001927 3.7e-08 63.9 424 24.1
Migut.D01681 Erythranthe guttata HOM05D002477 ORTHO05D001927 3.7e-08 63.9 83 42.2
AT4G12670 Arabidopsis thaliana HOM05D021191 ORTHO05D001927 4.8e-08 63.5 71 43.7
CiPaw.09G035000 Carya illinoinensis HOM05D002477 ORTHO05D001927 6.2e-08 63.2 414 25.1
RcHm_v2.0_Chr3g0481261 Rosa chinensis HOM05D002477 ORTHO05D001927 6.2e-08 63.2 67 47.8
TWI38G0076 Tripterygium wilfordii HOM05D002477 ORTHO05D001927 6.2e-08 63.2 480 24.8
arahy.Tifrunner.gnm1.ann1.NH26IS Arachis hypogaea HOM05D002477 ORTHO05D001927 8.1e-08 62.8 426 23.5
Duzib106G0995 Durio zibethinus HOM05D002477 ORTHO05D001927 8.1e-08 62.8 120 33.3
SalBow7G2975 Salvia bowleyana HOM05D002477 ORTHO05D001927 8.1e-08 62.8 79 38.0
Lsat_1_v5_gn_8_80200 Lactuca sativa HOM05D000424 ORTHO05D000355 1.1e-07 62.4 76 40.8
PGR042G2775 Punica granatum HOM05D002477 ORTHO05D001927 1.1e-07 62.4 80 41.2
CARHR209520 Cardamine hirsuta HOM05D010575 ORTHO05D001927 1.4e-07 62.0 69 46.4
HanXRQChr05g0132191 Helianthus annuus HOM05D002477 ORTHO05D001927 1.4e-07 62.0 76 40.8
Manes.18G010900 Manihot esculenta HOM05D002477 ORTHO05D001927 1.8e-07 61.6 78 37.2
BcaB02g06607 Brassica carinata HOM05D002477 ORTHO05D001927 2.4e-07 61.2 62 46.8
BcaB04g19570 Brassica carinata HOM05D010575 ORTHO05D001927 2.4e-07 61.2 404 25.0
BraA10t45353Z Brassica rapa HOM05D000240 ORTHO05D002608 2.4e-07 61.2 58 50.0
CANSAT80G0265 Cannabis sativa HOM05D002477 ORTHO05D001927 2.4e-07 61.2 125 29.6
DCAR_020474 Daucus carota HOM05D002477 ORTHO05D001927 2.4e-07 61.2 405 23.7
Solyc07g056120.3 Solanum lycopersicum HOM05D002477 ORTHO05D001927 2.4e-07 61.2 404 23.0
Haze_19906 Corylus avellana HOM05D002477 ORTHO05D001927 3.1e-07 60.8 121 33.1
Dinv21332 Davidia involucrata HOM05D002477 ORTHO05D001927 3.1e-07 60.8 445 23.6
PSO675G6033 Papaver somniferum HOM05D002477 ORTHO05D001927 3.1e-07 60.8 69 49.3
Sabra16G0056600 Salix brachista HOM05D002477 ORTHO05D001927 3.1e-07 60.8 403 22.1
unitig_62.g23101 Utricularia gibba HOM05D002477 ORTHO05D001927 3.1e-07 60.8 134 26.9
EL10Ac3g07024 Beta vulgaris HOM05D002477 ORTHO05D001927 4.0e-07 60.5 71 42.3
Duzib211G0533 Durio zibethinus HOM05D002477 ORTHO05D001927 4.0e-07 60.5 408 22.5
AL9U12160 Arabidopsis lyrata HOM05D021191 ORTHO05D001927 5.3e-07 60.1 65 43.1
BcaC04g23783 Brassica carinata HOM05D010575 ORTHO05D001927 5.3e-07 60.1 410 26.1
CSS0018822 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 5.3e-07 60.1 121 32.2
CSS0044202 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 5.3e-07 60.1 121 32.2
Carub.0001s0106 Capsella rubella HOM05D002477 ORTHO05D001927 5.3e-07 60.1 58 46.6
PGSC0003DMG400031096 Solanum tuberosum HOM05D002477 ORTHO05D001927 5.3e-07 60.1 407 21.9
Migut.M00522 Erythranthe guttata HOM05D002477 ORTHO05D001927 6.9e-07 59.7 78 41.0
Prupe.7G066400 Prunus persica HOM05D002477 ORTHO05D001927 6.9e-07 59.7 73 45.2
Mapoly0084s0085 Marchantia polymorpha HOM05D002477 ORTHO05D001927 9.0e-07 59.3 64 43.8
Atru.chr1.1043 Acer truncatum HOM05D002477 ORTHO05D001927 1.2e-06 58.9 126 29.4
Actinidia17246 Actinidia chinensis HOM05D002477 ORTHO05D001927 1.2e-06 58.9 241 26.6
C09p04690 Brassica napus HOM05D010575 ORTHO05D001927 1.2e-06 58.9 410 25.6
CiPaw.10G129800 Carya illinoinensis HOM05D002477 ORTHO05D001927 1.2e-06 58.9 94 36.2
Lj5g0008192 Lotus japonicus HOM05D002477 ORTHO05D001927 1.2e-06 58.9 130 29.2
Lj5g0016725 Lotus japonicus HOM05D002477 ORTHO05D001927 1.2e-06 58.9 130 29.2
Medtr3g082160 Medicago truncatula HOM05D002477 ORTHO05D001927 1.2e-06 58.9 75 40.0
Sp7g08980 Schrenkiella parvula HOM05D021191 ORTHO05D001927 1.2e-06 58.9 65 43.1
Solyc10g080300.1 Solanum lycopersicum HOM05D002477 ORTHO05D001927 1.2e-06 58.9 68 47.1
GSVIVG01033321001 Vitis vinifera HOM05D002477 ORTHO05D001927 1.2e-06 58.9 68 44.1
MSTRG.9604 Avicennia marina HOM05D002477 ORTHO05D001927 1.5e-06 58.5 156 28.8
CARHR001320 Cardamine hirsuta HOM05D002477 ORTHO05D001927 1.5e-06 58.5 84 38.1
Lj6g0015125 Lotus japonicus HOM05D002477 ORTHO05D001927 1.5e-06 58.5 74 37.8
Peaxi162Scf00398g00011 Petunia axillaris HOM05D002477 ORTHO05D001927 1.5e-06 58.5 79 38.0
Ah.04g151870 Amaranthus hybridus HOM05D002477 ORTHO05D001927 2.0e-06 58.2 94 42.6
AL1G11350 Arabidopsis lyrata HOM05D010575 ORTHO05D001927 2.0e-06 58.2 60 45.0
BcaC05g25588 Brassica carinata HOM05D002477 ORTHO05D001927 2.6e-06 57.8 62 41.9
A06p12200 Brassica napus HOM05D002477 ORTHO05D001927 2.6e-06 57.8 62 41.9
C05p14440 Brassica napus HOM05D002477 ORTHO05D001927 2.6e-06 57.8 62 41.9
BolC5t30170H Brassica oleracea HOM05D002477 ORTHO05D001927 2.6e-06 57.8 62 41.9
BraA06t24388Z Brassica rapa HOM05D002477 ORTHO05D001927 2.6e-06 57.8 62 41.9
CAN.G128.17 Capsicum annuum HOM05D002477 ORTHO05D001927 2.6e-06 57.8 92 37.0
Nitab4.5_0005559g0030 Nicotiana tabacum HOM05D002477 ORTHO05D001927 2.6e-06 57.8 97 36.1
Sabra02G0004000 Salix brachista HOM05D002477 ORTHO05D001927 2.6e-06 57.8 514 25.1
Pp3c12_8190 Physcomitrium patens HOM05D003468 ORTHO05D002806 3.4e-06 57.4 66 48.5
PGR004G2549 Punica granatum HOM05D002477 ORTHO05D001927 3.4e-06 57.4 68 41.2
Psat6g126680 Pisum sativum HOM05D002477 ORTHO05D001927 4.5e-06 57.0 90 38.9
Thecc.05G161200 Theobroma cacao HOM05D002477 ORTHO05D001927 4.5e-06 57.0 86 41.9
SalBow5G2191 Salvia bowleyana HOM05D002477 ORTHO05D001927 7.6e-06 56.2 155 30.3
Sopen10g030860 Solanum pennellii HOM05D002477 ORTHO05D001927 7.6e-06 56.2 73 42.5
CANSAT64G2375 Cannabis sativa HOM05D002477 ORTHO05D001927 9.9e-06 55.8 422 23.9
CARHR218000 Cardamine hirsuta HOM05D021191 ORTHO05D001927 9.9e-06 55.8 65 41.5
PGSC0003DMG400023718 Solanum tuberosum HOM05D002477 ORTHO05D001927 9.9e-06 55.8 73 42.5


User provided reference genes

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