Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G00965 Aquilegia oxysepala HOM05D005558 ORTHO05D006832 1.3e-125 453.0 216 100.0
PSO170G6225 Papaver somniferum HOM05D005558 ORTHO05D006832 1.9e-76 289.7 187 73.3
Nn6g31548 Nelumbo nucifera HOM05D005558 ORTHO05D006832 5.6e-76 288.1 189 73.0
PSO017G1036 Papaver somniferum HOM05D005558 ORTHO05D006832 5.6e-76 288.1 190 73.2
arahy.Tifrunner.gnm1.ann1.GVHP98 Arachis hypogaea HOM05D005558 ORTHO05D006832 1.0e-74 283.9 150 82.7
Cfa014170 Carpinus fangiana HOM05D005558 ORTHO05D006832 5.2e-74 281.6 191 71.7
Hma1.2p1_0914F.1_g236230 Hydrangea macrophylla HOM05D005558 ORTHO05D006832 6.8e-74 281.2 189 67.2
QL02p016334 Quercus lobata HOM05D005558 ORTHO05D006832 6.8e-74 281.2 187 71.7
EL10Ac7g17248 Beta vulgaris HOM05D005558 ORTHO05D006832 1.2e-73 280.4 154 78.6
Ca_18758_v3 Cicer arietinum L. HOM05D005558 ORTHO05D006832 1.2e-73 280.4 143 85.3
arahy.Tifrunner.gnm1.ann1.8D2970 Arachis hypogaea HOM05D005558 ORTHO05D006832 1.5e-73 280.0 189 69.3
TPR.G20977 Trifolium pratense HOM05D005558 ORTHO05D006832 2.0e-73 279.6 153 80.4
MSTRG.24533 Avicennia marina HOM05D005558 ORTHO05D006832 2.6e-73 279.3 147 83.7
COL.COLO4_12262 Corchorus olitorius HOM05D005558 ORTHO05D006832 3.4e-73 278.9 159 79.9
Medtr4g084120 Medicago truncatula HOM05D005558 ORTHO05D006832 3.4e-73 278.9 154 81.8
Prupe.5G000800 Prunus persica HOM05D005558 ORTHO05D006832 3.4e-73 278.9 158 80.4
Potri.002G001500 Populus trichocarpa HOM05D005558 ORTHO05D006832 4.4e-73 278.5 171 76.0
PGR083G0867 Punica granatum HOM05D005558 ORTHO05D006832 4.4e-73 278.5 192 69.3
Lsat_1_v5_gn_2_2740 Lactuca sativa HOM05D005558 ORTHO05D006832 7.5e-73 277.7 171 72.5
Sc17g0004140 Simmondsia chinensis HOM05D005558 ORTHO05D006832 7.5e-73 277.7 145 83.4
arahy.Tifrunner.gnm1.ann1.09GV4T Arachis hypogaea HOM05D005558 ORTHO05D006832 9.8e-73 277.3 145 82.8
arahy.Tifrunner.gnm1.ann1.H4MLSW Arachis hypogaea HOM05D005558 ORTHO05D006832 9.8e-73 277.3 145 82.8
CAN.G208.43 Capsicum annuum HOM05D005558 ORTHO05D006832 1.3e-72 276.9 155 76.8
Glyma.07G221200 Glycine max HOM05D005558 ORTHO05D006832 1.3e-72 276.9 156 76.9
Psat7g129880 Pisum sativum HOM05D005558 ORTHO05D006832 1.3e-72 276.9 153 79.7
Lalb_Chr05g0219661 Lupinus albus HOM05D005558 ORTHO05D006832 2.2e-72 276.2 147 82.3
CiPaw.08G079200 Carya illinoinensis HOM05D005558 ORTHO05D006832 2.9e-72 275.8 161 78.3
Thecc.08G097300 Theobroma cacao HOM05D005558 ORTHO05D006832 2.9e-72 275.8 158 79.1
CANSAT25G0089 Cannabis sativa HOM05D005558 ORTHO05D006832 3.7e-72 275.4 184 71.2
Gohir.A05G177400 Gossypium hirsutum HOM05D005558 ORTHO05D006832 4.9e-72 275.0 158 77.8
Gorai.009G185800 Gossypium raimondii HOM05D005558 ORTHO05D006832 4.9e-72 275.0 158 77.8
Phvul.002G097800 Phaseolus vulgaris HOM05D005558 ORTHO05D006832 4.9e-72 275.0 156 76.9
Ah.08g212310 Amaranthus hybridus HOM05D005558 ORTHO05D006832 6.4e-72 274.6 173 70.5
PGSC0003DMG400029397 Solanum tuberosum HOM05D005558 ORTHO05D006832 6.4e-72 274.6 146 79.5
TWI12G1391 Tripterygium wilfordii HOM05D005558 ORTHO05D006832 1.4e-71 273.5 185 71.9
Gohir.D05G180800 Gossypium hirsutum HOM05D005558 ORTHO05D006832 1.8e-71 273.1 158 77.2
Lj4g0004166 Lotus japonicus HOM05D005558 ORTHO05D006832 1.8e-71 273.1 151 78.8
CiPaw.07G129900 Carya illinoinensis HOM05D005558 ORTHO05D006832 2.4e-71 272.7 191 70.2
Migut.N03003 Erythranthe guttata HOM05D005558 ORTHO05D006832 2.4e-71 272.7 162 75.9
CSS0024776 Camellia sinensis var. sinensis HOM05D005558 ORTHO05D006832 3.2e-71 272.3 143 83.2
CsaV3_4G037850 Cucumis sativus L. HOM05D005558 ORTHO05D006832 3.2e-71 272.3 175 72.6
Duzib116G0928 Durio zibethinus HOM05D005558 ORTHO05D006832 3.2e-71 272.3 157 77.1
Nitab4.5_0003423g0040 Nicotiana tabacum HOM05D005558 ORTHO05D006832 3.2e-71 272.3 188 66.5
GSVIVG01013466001 Vitis vinifera HOM05D005558 ORTHO05D006832 3.2e-71 272.3 143 83.9
Sopen12g031670 Solanum pennellii HOM05D005558 ORTHO05D006832 4.1e-71 271.9 188 66.5
Manes.18G000600 Manihot esculenta HOM05D005558 ORTHO05D006832 5.4e-71 271.6 202 65.3
ClCG11G019260 Citrullus lanatus HOM05D005558 ORTHO05D006832 9.2e-71 270.8 176 70.5
Cc10_g00070 Coffea canephora HOM05D005558 ORTHO05D006832 9.2e-71 270.8 144 81.2
RcHm_v2.0_Chr7g0217691 Rosa chinensis HOM05D005558 ORTHO05D006832 9.2e-71 270.8 183 68.9
Hund05339 Selenicereus undatus HOM05D005558 ORTHO05D006832 9.2e-71 270.8 144 79.9
Solyc12g095770.2 Solanum lycopersicum HOM05D005558 ORTHO05D006832 9.2e-71 270.8 188 66.0
ATR0605G185 Amborella trichopoda HOM05D005558 ORTHO05D006832 1.6e-70 270.0 185 70.3
MD06G1057400 Malus domestica HOM05D005558 ORTHO05D006832 1.6e-70 270.0 143 83.9
THA.LOC104813721 Tarenaya hassleriana HOM05D005558 ORTHO05D006832 1.6e-70 270.0 186 70.4
BcaB03g12837 Brassica carinata HOM05D005558 ORTHO05D006832 2.7e-70 269.2 188 69.1
A08p29100 Brassica napus HOM05D005558 ORTHO05D006832 2.7e-70 269.2 177 72.3
BraA08t34846Z Brassica rapa HOM05D005558 ORTHO05D006832 2.7e-70 269.2 177 72.3
BcaC05g26014 Brassica carinata HOM05D005558 ORTHO05D006832 5.9e-70 268.1 191 67.0
Sp1g18730 Schrenkiella parvula HOM05D005558 ORTHO05D006832 5.9e-70 268.1 186 68.3
BolC8t49687H Brassica oleracea HOM05D005558 ORTHO05D006832 7.8e-70 267.7 195 67.2
BcaC07g39074 Brassica carinata HOM05D005558 ORTHO05D006832 1.0e-69 267.3 187 69.5
Carub.0001s2052 Capsella rubella HOM05D005558 ORTHO05D006832 1.3e-69 266.9 184 68.5
Lalb_Chr15g0083971 Lupinus albus HOM05D005558 ORTHO05D006832 1.3e-69 266.9 158 77.2
Glyma.15G161100 Glycine max HOM05D005558 ORTHO05D006832 1.7e-69 266.5 183 69.4
MD07G1016000 Malus domestica HOM05D005558 ORTHO05D006832 1.7e-69 266.5 143 83.2
BcaB07g32099 Brassica carinata HOM05D005558 ORTHO05D006832 2.3e-69 266.2 184 67.9
HPP92_021698 Vanilla planifolia HOM05D005558 ORTHO05D006832 2.3e-69 266.2 141 80.9
Zm00001eb234660 Zea mays HOM05D005558 ORTHO05D006832 3.0e-69 265.8 142 79.6
BraA06t24816Z Brassica rapa HOM05D005558 ORTHO05D006832 5.0e-69 265.0 158 75.9
FvH4_5g26780 Fragaria vesca HOM05D005558 ORTHO05D006832 5.0e-69 265.0 162 74.1
FAN04G1408 Fragaria x ananassa HOM05D005558 ORTHO05D006832 5.0e-69 265.0 194 63.9
FAN18G4437 Fragaria x ananassa HOM05D005558 ORTHO05D006832 5.0e-69 265.0 162 74.1
SGA_v2.0_scaffold19G08925 Striga asiatica HOM05D005558 ORTHO05D006832 5.0e-69 265.0 147 79.6
Rhsim06G0000500 Rhododendron simsii HOM05D005558 ORTHO05D006832 8.6e-69 264.2 232 58.2
A06p17130 Brassica napus HOM05D005558 ORTHO05D006832 1.1e-68 263.8 158 75.3
AL1G34110 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 1.5e-68 263.5 161 74.5
CARHR021510 Cardamine hirsuta HOM05D005558 ORTHO05D006832 1.5e-68 263.5 184 65.8
Thhalv10008709m.g Eutrema salsugineum HOM05D005558 ORTHO05D006832 2.5e-68 262.7 185 67.0
Peaxi162Scf00064g01430 Petunia axillaris HOM05D005558 ORTHO05D006832 2.5e-68 262.7 160 74.4
FAN08G1374 Fragaria x ananassa HOM05D005558 ORTHO05D006832 3.3e-68 262.3 200 63.0
Eucgr.F01955 Eucalyptus grandis HOM05D005558 ORTHO05D006832 2.8e-67 259.2 238 57.1
Os02g0187500 Oryza sativa ssp. japonica HOM05D005558 ORTHO05D006832 2.8e-67 259.2 142 79.6
AT1G21065 Arabidopsis thaliana HOM05D005558 ORTHO05D006832 1.4e-66 256.9 161 72.0
SMO259G0018 Selaginella moellendorffii HOM05D005558 ORTHO05D006832 1.8e-66 256.5 140 77.9
HPP92_017798 Vanilla planifolia HOM05D005558 ORTHO05D006832 1.2e-65 253.8 174 67.2
Mapoly0002s0034 Marchantia polymorpha HOM05D005558 ORTHO05D006832 1.5e-65 253.4 140 78.6
Zm00001eb387340 Zea mays HOM05D005558 ORTHO05D006832 2.0e-65 253.1 142 75.4
Pp3c1_31360 Physcomitrium patens HOM05D005558 ORTHO05D006832 6.4e-64 248.1 164 68.3
SEGI_40156 Sequoiadendron giganteum HOM05D005558 ORTHO05D006832 6.4e-64 248.1 140 76.4
Atru.chr13.17 Acer truncatum HOM05D005558 ORTHO05D006832 1.5e-60 236.9 162 71.6
Sabra02G0001000 Salix brachista HOM05D005558 ORTHO05D006832 4.3e-60 235.3 170 69.4
Nitab4.5_0001309g0160 Nicotiana tabacum HOM05D005558 ORTHO05D006832 1.2e-59 233.8 127 78.7
TAR381G1539 Trochodendron aralioides HOM05D005558 ORTHO05D006832 1.2e-59 233.8 122 85.2
ECA238G0376 Erigeron canadensis HOM05D005558 ORTHO05D006832 1.6e-59 233.4 126 80.2
HanXRQChr14g0427511 Helianthus annuus HOM05D005558 ORTHO05D006832 1.1e-58 230.7 136 78.7
Ciclev10002303m.g Citrus clementina HOM05D005558 ORTHO05D006832 5.2e-58 228.4 178 64.6
AUR62041000 Chenopodium quinoa HOM05D005558 ORTHO05D006832 6.8e-58 228.0 149 71.1
Actinidia15539 Actinidia chinensis HOM05D005558 ORTHO05D006832 1.5e-57 226.9 121 82.6
MELO3C017079.2 Cucumis melo HOM05D005558 ORTHO05D006832 1.7e-56 223.4 119 81.5
C08p20580 Brassica napus HOM05D005558 ORTHO05D006832 4.9e-56 221.9 173 64.7
Sed0017561 Sechium edule HOM05D005558 ORTHO05D006832 1.9e-55 219.9 121 80.2
BolC5t30678H Brassica oleracea HOM05D000370 ORTHO05D006832 5.4e-55 218.4 138 71.7
Lj4C814G4 Lonicera japonica HOM05D005558 ORTHO05D006832 2.7e-54 216.1 163 62.6
Cre17.g739300 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D006832 1.3e-53 213.8 140 67.1
Prupe.5G000700 Prunus persica HOM05D005558 ORTHO05D006832 1.5e-52 210.3 120 77.5
SGA_v2.0_scaffold25G11031 Striga asiatica HOM05D005558 ORTHO05D006832 1.5e-52 210.3 149 67.1
Dinv05517 Davidia involucrata HOM05D005558 ORTHO05D006832 8.9e-50 201.1 149 67.8
VMungo0251G0776 Vigna mungo HOM05D005558 ORTHO05D006832 2.6e-49 199.5 118 76.3
Phvul.009G240200 Phaseolus vulgaris HOM05D005558 ORTHO05D006832 3.8e-48 195.7 110 80.9
Os06g0638200 Oryza sativa ssp. japonica HOM05D005558 ORTHO05D006832 1.1e-47 194.1 99 82.8
SMO203G0115 Selaginella moellendorffii HOM05D005558 ORTHO05D006832 5.8e-41 171.8 140 55.7
TAR376G0283 Trochodendron aralioides HOM05D005558 ORTHO05D006832 1.4e-39 167.2 90 84.4
Haze_22894 Corylus avellana HOM05D005558 ORTHO05D006832 5.4e-39 165.2 191 48.2
vmacro21735 Vaccinium macrocarpon HOM05D005558 ORTHO05D006832 5.4e-39 165.2 87 86.2
Mapoly0065s0101 Marchantia polymorpha HOM05D005558 ORTHO05D006832 1.2e-38 164.1 140 55.7
SEGI_39286 Sequoiadendron giganteum HOM05D005558 ORTHO05D006832 1.6e-38 163.7 145 52.4
Pp3c2_25680 Physcomitrium patens HOM05D005558 ORTHO05D006832 4.6e-38 162.2 139 53.2
Peaxi162Scf00064g01422 Petunia axillaris HOM05D005558 ORTHO05D006832 1.0e-37 161.0 141 57.4
Oeu000735.2 Olea europaea HOM05D005558 ORTHO05D006832 1.1e-36 157.5 90 76.7
Cre01.g043100 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D006832 2.8e-35 152.9 158 48.7
Cfa023908 Carpinus fangiana HOM05D005558 ORTHO05D006832 9.9e-33 144.4 182 42.9
CDE04G3086 Ceratophyllum demersum HOM05D000433 ORTHO05D000443 1.1e-31 141.0 157 47.8
SalBow6G6347 Salvia bowleyana HOM05D005558 ORTHO05D006832 1.2e-30 137.5 146 47.9
CBR_g570 Chara braunii HOM05D005558 ORTHO05D006832 3.0e-29 132.9 85 69.4
MCO09G054 Micromonas commoda HOM05D005558 ORTHO05D006832 1.1e-26 124.4 133 46.6
AL8G17720 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 4.5e-25 119.0 72 79.2
C05p19780 Brassica napus HOM05D005558 ORTHO05D006832 9.9e-25 117.9 59 79.7
HPP92_021704 Vanilla planifolia HOM05D005558 ORTHO05D006832 6.4e-24 115.2 118 50.0
AL5G16180 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 5.5e-23 112.1 70 77.1
BcaC07g39073 Brassica carinata HOM05D005558 ORTHO05D006832 5.1e-21 105.5 53 81.1
Aa31LG7G5210 Aethionema arabicum HOM05D005558 ORTHO05D006832 4.5e-17 92.4 187 35.3
AagrBONN_evm.TU.Sc2ySwM_344.2923 Anthoceros agrestis HOM05D005558 ORTHO05D006832 7.9e-14 81.6 78 52.6
Cre09.g396850 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D034498 5.7e-12 75.5 156 32.1
PRCOL_00001425 Prasinoderma coloniale HOM05D005558 ORTHO05D006832 5.7e-12 75.5 145 32.4
Cpa.g.sc36.93 Carica papaya HOM05D005558 ORTHO05D006832 8.2e-11 71.6 31 96.8
Cpa.g.sc36.94 Carica papaya HOM05D005558 ORTHO05D006832 1.4e-10 70.9 118 40.7
MCO09G751 Micromonas commoda HOM05D005558 ORTHO05D034498 2.6e-09 66.6 143 30.8
DCAR_022964 Daucus carota HOM05D005558 ORTHO05D006832 3.8e-08 62.8 76 50.0
EL10Ac3g07438 Beta vulgaris HOM05D000371 ORTHO05D013217 1.4e-07 60.8 44 56.8
PRCOL_00001511 Prasinoderma coloniale HOM05D005558 ORTHO05D034498 4.6e-06 55.8 131 27.5


User provided reference genes

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