Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G00949 Aquilegia oxysepala HOM05D004638 ORTHO05D005443 4.1e-172 608.2 367 100.0
TAR623G0129 Trochodendron aralioides HOM05D004638 ORTHO05D005443 2.0e-81 307.0 372 53.5
Gohir.D09G231600 Gossypium hirsutum HOM05D004638 ORTHO05D005443 9.4e-76 288.1 370 50.5
Gorai.006G254300 Gossypium raimondii HOM05D004638 ORTHO05D005443 9.4e-76 288.1 370 50.5
Gohir.A09G230500 Gossypium hirsutum HOM05D004638 ORTHO05D005443 3.6e-75 286.2 370 50.3
Duzib212G0972 Durio zibethinus HOM05D004638 ORTHO05D005443 5.2e-74 282.3 373 49.6
CiPaw.01G176300 Carya illinoinensis HOM05D004638 ORTHO05D005443 1.2e-73 281.2 372 50.8
Duzib052G1194 Durio zibethinus HOM05D004638 ORTHO05D005443 2.6e-73 280.0 373 49.6
Cfa014805 Carpinus fangiana HOM05D004638 ORTHO05D005443 4.4e-73 279.3 377 50.4
TWI53G1292 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 2.8e-72 276.6 371 50.9
FvH4_2g18960 Fragaria vesca HOM05D004638 ORTHO05D005443 6.3e-72 275.4 365 51.0
Thecc.04G268000 Theobroma cacao HOM05D004638 ORTHO05D005443 1.1e-71 274.6 370 48.6
Haze_15400 Corylus avellana HOM05D004638 ORTHO05D005443 1.4e-71 274.2 376 53.2
Haze_15402 Corylus avellana HOM05D004638 ORTHO05D005443 1.4e-71 274.2 376 53.2
FAN17G1367 Fragaria x ananassa HOM05D004638 ORTHO05D005443 1.4e-71 274.2 368 50.8
FAN24G1523 Fragaria x ananassa HOM05D004638 ORTHO05D005443 1.4e-71 274.2 365 51.2
Atru.chr4.1922 Acer truncatum HOM05D004638 ORTHO05D005443 3.1e-71 273.1 358 52.0
MD16G1229100 Malus domestica HOM05D004638 ORTHO05D005443 3.1e-71 273.1 378 50.0
ClCG06G018050 Citrullus lanatus HOM05D004638 ORTHO05D005443 5.4e-71 272.3 372 49.2
QL06p021792 Quercus lobata HOM05D004638 ORTHO05D005443 5.4e-71 272.3 377 50.1
FvH4_4g05060 Fragaria vesca HOM05D004638 ORTHO05D005443 1.2e-70 271.2 368 51.9
FAN12G0885 Fragaria x ananassa HOM05D004638 ORTHO05D005443 1.2e-70 271.2 368 51.9
FAN22G0870 Fragaria x ananassa HOM05D004638 ORTHO05D005443 2.0e-70 270.4 376 48.9
COL.COLO4_15993 Corchorus olitorius HOM05D004638 ORTHO05D005443 1.0e-69 268.1 372 48.7
FAN15G0747 Fragaria x ananassa HOM05D004638 ORTHO05D005443 1.0e-69 268.1 354 52.3
RcHm_v2.0_Chr4g0395981 Rosa chinensis HOM05D004638 ORTHO05D005443 1.0e-69 268.1 369 51.8
Ciclev10025979m.g Citrus clementina HOM05D004638 ORTHO05D005443 3.8e-69 266.2 371 47.7
Sed0011634 Sechium edule HOM05D004638 ORTHO05D005443 5.0e-69 265.8 377 52.0
Prupe.1G051000 Prunus persica HOM05D004638 ORTHO05D005443 8.6e-69 265.0 382 51.0
Aa31LG11G6060 Aethionema arabicum HOM05D004638 ORTHO05D005443 1.9e-68 263.8 371 48.2
Manes.15G046900 Manihot esculenta HOM05D004638 ORTHO05D005443 2.5e-68 263.5 373 50.4
MELO3C026193.2 Cucumis melo HOM05D004638 ORTHO05D005443 1.2e-67 261.2 373 47.2
CsaV3_1G000420 Cucumis sativus L. HOM05D004638 ORTHO05D005443 2.1e-67 260.4 373 46.9
Thhalv10013953m.g Eutrema salsugineum HOM05D004638 ORTHO05D005443 2.8e-67 260.0 372 49.5
GSVIVG01027946001 Vitis vinifera HOM05D004638 ORTHO05D005443 8.0e-67 258.5 369 49.9
C03p02590 Brassica napus HOM05D004638 ORTHO05D005443 1.0e-66 258.1 373 47.5
PGR142G1578 Punica granatum HOM05D004638 ORTHO05D005443 1.0e-66 258.1 374 47.3
ClCG06G007330 Citrullus lanatus HOM05D004638 ORTHO05D005443 1.4e-66 257.7 364 50.5
Glyma.19G074500 Glycine max HOM05D004638 ORTHO05D005443 3.0e-66 256.5 357 50.1
Potri.010G064100 Populus trichocarpa HOM05D004638 ORTHO05D005443 6.8e-66 255.4 370 49.5
Carub.0006s0414 Capsella rubella HOM05D004638 ORTHO05D005443 1.5e-65 254.2 378 45.8
BcaB01g05944 Brassica carinata HOM05D004638 ORTHO05D005443 2.0e-65 253.8 371 48.0
ATR0051G063 Amborella trichopoda HOM05D004638 ORTHO05D005443 2.6e-65 253.4 362 50.0
Phvul.003G100800 Phaseolus vulgaris HOM05D004638 ORTHO05D005443 4.4e-65 252.7 352 50.3
Sp6g37620 Schrenkiella parvula HOM05D004638 ORTHO05D005443 4.4e-65 252.7 372 47.8
AL6G15050 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 7.5e-65 251.9 378 46.3
THA.LOC104800549 Tarenaya hassleriana HOM05D004638 ORTHO05D005443 7.5e-65 251.9 375 48.0
Eucgr.H01383 Eucalyptus grandis HOM05D004638 ORTHO05D005443 1.3e-64 251.1 372 45.7
Haze_11486 Corylus avellana HOM05D004638 ORTHO05D005443 6.3e-64 248.8 377 47.5
BcaB05g21727 Brassica carinata HOM05D004638 ORTHO05D005443 8.3e-64 248.4 369 46.9
BraA02t04837Z Brassica rapa HOM05D004638 ORTHO05D005443 8.3e-64 248.4 352 50.0
C02p02210 Brassica napus HOM05D004638 ORTHO05D005443 2.4e-63 246.9 354 48.9
BcaB01g05717 Brassica carinata HOM05D004638 ORTHO05D005443 4.1e-63 246.1 365 46.8
BolC3t12811H Brassica oleracea HOM05D004638 ORTHO05D005443 4.1e-63 246.1 370 47.0
A03p02250 Brassica napus HOM05D004638 ORTHO05D005443 1.6e-62 244.2 370 46.5
BraA03t09589Z Brassica rapa HOM05D004638 ORTHO05D005443 1.6e-62 244.2 370 46.5
MELO3C023050.2 Cucumis melo HOM05D004638 ORTHO05D005443 1.6e-62 244.2 374 47.9
Lj2C17T3 Lonicera japonica HOM05D004638 ORTHO05D005443 1.6e-62 244.2 334 51.8
BcaC03g13151 Brassica carinata HOM05D004638 ORTHO05D005443 2.0e-62 243.8 354 49.2
BolC2t06190H Brassica oleracea HOM05D004638 ORTHO05D005443 2.0e-62 243.8 354 49.2
Atru.chr2.74 Acer truncatum HOM05D004638 ORTHO05D005443 3.5e-62 243.0 335 49.6
TWI73G0168 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 3.5e-62 243.0 384 46.1
VMungo1215G0894 Vigna mungo HOM05D004638 ORTHO05D005443 3.5e-62 243.0 345 49.9
CsaV3_2G012340 Cucumis sativus L. HOM05D004638 ORTHO05D005443 5.9e-62 242.3 374 47.6
Hma1.2p1_0751F.1_g212710 Hydrangea macrophylla HOM05D004638 ORTHO05D005443 2.3e-61 240.4 376 46.3
CDE06G2325 Ceratophyllum demersum HOM05D004638 ORTHO05D005443 5.0e-61 239.2 343 46.6
Dinv31214 Davidia involucrata HOM05D001005 ORTHO05D000836 5.0e-61 239.2 373 49.6
Medtr5g012820 Medicago truncatula HOM05D004638 ORTHO05D005443 5.0e-61 239.2 386 46.6
Lalb_Chr11g0063191 Lupinus albus HOM05D004638 ORTHO05D005443 6.6e-61 238.8 375 46.7
DCAR_007662 Daucus carota HOM05D004638 ORTHO05D005443 8.6e-61 238.4 370 45.7
CARHR208030 Cardamine hirsuta HOM05D004638 ORTHO05D005443 9.5e-60 235.0 373 44.8
Psat2g177000 Pisum sativum HOM05D004638 ORTHO05D005443 1.6e-59 234.2 378 45.2
Cpa.g.c29962.1 Carica papaya HOM05D004638 ORTHO05D005443 2.3e-58 230.3 370 44.9
AT5G05210 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 6.8e-58 228.8 400 43.0
CANSAT01G0932 Cannabis sativa HOM05D004638 ORTHO05D005443 8.9e-58 228.4 373 47.2
CANSAT01G3035 Cannabis sativa HOM05D004638 ORTHO05D005443 8.9e-58 228.4 373 47.2
Ah.16g102130 Amaranthus hybridus HOM05D004638 ORTHO05D005443 1.2e-57 228.0 374 43.3
HPP92_027401 Vanilla planifolia HOM05D004638 ORTHO05D005443 1.5e-57 227.6 391 43.7
Glyma.05G075900 Glycine max HOM05D004638 ORTHO05D005443 2.0e-57 227.3 373 48.0
CiPaw.02G105500 Carya illinoinensis HOM05D004638 ORTHO05D005443 3.4e-57 226.5 373 46.6
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 1.3e-56 224.6 387 42.9
Sabra10G0042900 Salix brachista HOM05D004638 ORTHO05D005443 2.9e-56 223.4 375 46.1
SGA_v2.0_scaffold21G09643 Striga asiatica HOM05D004638 ORTHO05D005443 2.9e-56 223.4 364 45.3
TPR.G7963 Trifolium pratense HOM05D004638 ORTHO05D005443 4.9e-56 222.6 350 47.4
Potri.008G173300 Populus trichocarpa HOM05D004638 ORTHO05D005443 1.4e-55 221.1 372 45.7
CDE07G1349 Ceratophyllum demersum HOM05D002308 ORTHO05D005297 3.5e-54 216.5 311 44.4
SalBow5G3921 Salvia bowleyana HOM05D004638 ORTHO05D005443 2.3e-53 213.8 352 43.5
TPR.G18128 Trifolium pratense HOM05D004638 ORTHO05D005443 1.5e-52 211.1 406 40.9
Ca_03509_v3 Cicer arietinum L. HOM05D004638 ORTHO05D005443 1.9e-52 210.7 362 44.2
MD13G1224300 Malus domestica HOM05D004638 ORTHO05D005443 7.3e-52 208.8 271 51.3
arahy.Tifrunner.gnm1.ann1.L9DXTM Arachis hypogaea HOM05D004638 ORTHO05D005443 9.5e-52 208.4 377 44.3
Lalb_Chr08g0244981 Lupinus albus HOM05D004638 ORTHO05D005443 9.5e-52 208.4 374 44.9
Migut.L01893 Erythranthe guttata HOM05D004638 ORTHO05D005443 6.2e-51 205.7 351 45.3
Oeu017919.1 Olea europaea HOM05D004638 ORTHO05D005443 8.0e-51 205.3 390 40.8
SGA_v2.0_scaffold41G15829 Striga asiatica HOM05D004638 ORTHO05D005443 1.1e-50 204.9 358 44.7
Lsat_1_v5_gn_9_30280 Lactuca sativa HOM05D004638 ORTHO05D005443 1.4e-50 204.5 351 46.4
PGSC0003DMG400013656 Solanum tuberosum HOM05D004638 ORTHO05D005443 6.8e-50 202.2 322 46.9
EL10Ac2g04652 Beta vulgaris HOM05D004638 ORTHO05D005443 1.5e-49 201.1 348 45.1
ECA246G4403 Erigeron canadensis HOM05D004638 ORTHO05D005443 2.6e-49 200.3 354 42.9
Solyc02g082130.2 Solanum lycopersicum HOM05D004638 ORTHO05D005443 7.5e-49 198.7 321 45.5
Sopen02g026790 Solanum pennellii HOM05D004638 ORTHO05D005443 4.9e-48 196.1 321 45.8
MSTRG.13923 Avicennia marina HOM05D004638 ORTHO05D005443 8.3e-48 195.3 354 41.5
MSTRG.26536 Avicennia marina HOM05D004638 ORTHO05D005443 8.3e-48 195.3 354 41.5
HanXRQChr11g0320631 Helianthus annuus HOM05D004638 ORTHO05D005443 1.9e-47 194.1 359 45.7
Nitab4.5_0001815g0110 Nicotiana tabacum HOM05D004638 ORTHO05D005443 1.6e-46 191.0 358 40.2
Peaxi162Scf00048g00171 Petunia axillaris HOM05D004638 ORTHO05D005443 2.7e-46 190.3 347 42.1
HanXRQChr14g0438771 Helianthus annuus HOM05D004638 ORTHO05D005443 7.8e-46 188.7 358 44.7
Nitab4.5_0000614g0010 Nicotiana tabacum HOM05D004638 ORTHO05D005443 5.0e-45 186.0 358 40.2
COL.COLO4_32263 Corchorus olitorius HOM05D004638 ORTHO05D005443 1.2e-43 181.4 369 40.4
Sc06g0001700 Simmondsia chinensis HOM05D004638 ORTHO05D005443 6.2e-43 179.1 368 39.9
CAN.G809.17 Capsicum annuum HOM05D004638 ORTHO05D005443 2.3e-42 177.2 362 40.1
Lj4g0009002 Lotus japonicus HOM05D004638 ORTHO05D005443 8.9e-42 175.3 375 39.2
Mapoly0122s0042 Marchantia polymorpha HOM05D004638 ORTHO05D005443 8.9e-42 175.3 370 37.8
Zm00001eb248040 Zea mays HOM05D004638 ORTHO05D005443 1.3e-40 171.4 346 40.8
Nn4g24624 Nelumbo nucifera HOM05D004638 ORTHO05D005443 4.1e-39 166.4 234 48.3
SEGI_31736 Sequoiadendron giganteum HOM05D004638 ORTHO05D005443 3.5e-38 163.3 384 36.5
CSS0022021 Camellia sinensis var. sinensis HOM05D004638 ORTHO05D005443 1.7e-37 161.0 285 46.7
Carub.0004s0850 Capsella rubella HOM05D004638 ORTHO05D005443 5.6e-36 156.0 310 39.4
Actinidia22435 Actinidia chinensis HOM05D004638 ORTHO05D005443 6.2e-35 152.5 130 63.8
AL4G22550 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 6.4e-32 142.5 288 38.5
Cc04_g09510 Coffea canephora HOM05D004638 ORTHO05D005443 8.4e-32 142.1 364 35.4
Os05g0372200 Oryza sativa ssp. japonica HOM05D004638 ORTHO05D005443 3.5e-30 136.7 342 40.4
Pp3c8_4010 Physcomitrium patens HOM05D004638 ORTHO05D005443 5.1e-29 132.9 372 34.7
SMO119G0466 Selaginella moellendorffii HOM05D004638 ORTHO05D005443 1.1e-26 125.2 325 35.7
Actinidia06751 Actinidia chinensis HOM05D004638 ORTHO05D005443 1.8e-26 124.4 293 39.9
AT2G27750 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 4.0e-26 123.2 178 45.5
arahy.Tifrunner.gnm1.ann1.XHZZ6B Arachis hypogaea HOM05D004638 ORTHO05D005443 1.5e-25 121.3 315 37.5
Medtr2g079000 Medicago truncatula HOM05D004638 ORTHO05D005443 2.6e-25 120.6 321 33.3
AUR62014564 Chenopodium quinoa HOM05D004638 ORTHO05D005443 1.3e-24 118.2 369 30.9
Atru.chr4.1888 Acer truncatum HOM05D004638 ORTHO05D005443 3.2e-23 113.6 138 50.7
AagrBONN_evm.TU.Sc2ySwM_368.887 Anthoceros agrestis HOM05D004638 ORTHO05D005443 1.6e-22 111.3 341 32.0
AUR62039396 Chenopodium quinoa HOM05D004638 ORTHO05D005443 3.9e-21 106.7 100 57.0
Lj3g0004611 Lotus japonicus HOM05D004638 ORTHO05D005443 2.4e-18 97.4 247 37.7
Oeu016931.1 Olea europaea HOM05D004638 ORTHO05D005443 2.4e-18 97.4 261 34.9
HanXRQChr11g0320651 Helianthus annuus HOM05D004638 ORTHO05D005443 4.5e-17 93.2 189 42.3
unitig_22.g5967 Utricularia gibba HOM05D004638 ORTHO05D005443 1.7e-16 91.3 92 50.0
CBR_g30748 Chara braunii HOM05D003542 ORTHO05D004799 4.2e-15 86.7 438 27.6
arahy.Tifrunner.gnm1.ann1.EFW0VL Arachis hypogaea HOM05D004638 ORTHO05D005443 9.3e-15 85.5 138 46.4
Manes.12G121700 Manihot esculenta HOM05D004638 ORTHO05D005443 6.0e-14 82.8 203 42.9
Actinidia16422 Actinidia chinensis HOM05D004638 ORTHO05D005443 2.5e-12 77.4 132 40.2
MCO04G484 Micromonas commoda HOM05D004638 ORTHO05D005443 2.4e-10 70.9 361 28.3
unitig_22.g5966 Utricularia gibba HOM05D004638 ORTHO05D005443 1.2e-09 68.6 139 36.7
AUR62039395 Chenopodium quinoa HOM05D004638 ORTHO05D005443 1.9e-07 61.2 102 40.2
Lsat_1_v5_gn_9_30260 Lactuca sativa HOM05D004638 ORTHO05D005443 9.3e-07 58.9 51 58.8
Medtr2g079040 Medicago truncatula HOM05D004638 ORTHO05D005443 9.3e-07 58.9 50 58.0
Nitab4.5_0000047g0220 Nicotiana tabacum HOM05D004638 ORTHO05D005443 9.3e-07 58.9 84 39.3


User provided reference genes

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