Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G00880 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 5.8e-64 247.3 116 100.0
TAR374G0876 Trochodendron aralioides HOM05D003744 ORTHO05D004327 8.8e-20 100.5 272 29.8
PSO384G3023 Papaver somniferum HOM05D003744 ORTHO05D004327 3.1e-17 92.0 60 75.0
Aqoxy1G00571 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 4.1e-17 91.7 55 76.4
Potri.005G093600 Populus trichocarpa HOM05D003744 ORTHO05D004327 4.1e-17 91.7 60 71.7
CiPaw.05G168300 Carya illinoinensis HOM05D003744 ORTHO05D004327 5.3e-17 91.3 55 76.4
Prupe.1G346400 Prunus persica HOM05D003744 ORTHO05D004327 5.3e-17 91.3 55 76.4
Nn2g14543 Nelumbo nucifera HOM05D003744 ORTHO05D004327 7.0e-17 90.9 55 74.5
MD16G1001300 Malus domestica HOM05D003744 ORTHO05D004327 9.1e-17 90.5 146 38.4
Prupe.4G276200 Prunus persica HOM05D003744 ORTHO05D004327 9.1e-17 90.5 55 76.4
QL03p042814 Quercus lobata HOM05D003744 ORTHO05D004327 9.1e-17 90.5 54 74.1
QL03p058539 Quercus lobata HOM05D003744 ORTHO05D004327 9.1e-17 90.5 54 74.1
QL08p053649 Quercus lobata HOM05D003744 ORTHO05D004327 9.1e-17 90.5 54 74.1
TWI53G1840 Tripterygium wilfordii HOM05D003744 ORTHO05D004327 9.1e-17 90.5 55 76.4
MD15G1355200 Malus domestica HOM05D003744 ORTHO05D004327 1.2e-16 90.1 55 74.5
Cfa008732 Carpinus fangiana HOM05D003744 ORTHO05D004327 1.6e-16 89.7 53 75.5
DCAR_029703 Daucus carota HOM05D003744 ORTHO05D004327 2.0e-16 89.4 55 72.7
Ca_07785_v3 Cicer arietinum L. HOM05D003744 ORTHO05D004327 2.7e-16 89.0 60 68.3
ECA233G3748 Erigeron canadensis HOM05D003744 ORTHO05D004327 2.7e-16 89.0 53 75.5
Lj8A264T57 Lonicera japonica HOM05D003744 ORTHO05D004327 2.7e-16 89.0 53 77.4
DCAR_026464 Daucus carota HOM05D003744 ORTHO05D004327 5.9e-16 87.8 52 73.1
HanXRQChr11g0332851 Helianthus annuus HOM05D003744 ORTHO05D004327 5.9e-16 87.8 53 73.6
GSVIVG01012037001 Vitis vinifera HOM05D003744 ORTHO05D004327 5.9e-16 87.8 60 70.0
Atru.chr11.479 Acer truncatum HOM05D003744 ORTHO05D004327 7.7e-16 87.4 52 75.0
Aa31LG9G10990 Aethionema arabicum HOM05D003744 ORTHO05D004327 7.7e-16 87.4 51 78.4
COL.COLO4_10100 Corchorus olitorius HOM05D003744 ORTHO05D004327 7.7e-16 87.4 72 61.1
Gohir.A12G134500 Gossypium hirsutum HOM05D003744 ORTHO05D004327 7.7e-16 87.4 55 70.9
Sed0012155 Sechium edule HOM05D003744 ORTHO05D004327 1.0e-15 87.0 55 76.4
FvH4_4g36840 Fragaria vesca HOM05D003744 ORTHO05D004327 1.3e-15 86.7 55 72.7
Ciclev10031746m.g Citrus clementina HOM05D003744 ORTHO05D004327 1.7e-15 86.3 52 75.0
PGSC0003DMG400024499 Solanum tuberosum HOM05D003744 ORTHO05D004327 1.7e-15 86.3 52 73.1
MELO3C024026.2 Cucumis melo HOM05D003744 ORTHO05D004327 2.2e-15 85.9 55 72.7
CsaV3_3G031430 Cucumis sativus L. HOM05D003744 ORTHO05D004327 2.2e-15 85.9 55 72.7
arahy.Tifrunner.gnm1.ann1.1L5CCL Arachis hypogaea HOM05D003744 ORTHO05D004327 2.9e-15 85.5 55 72.7
arahy.Tifrunner.gnm1.ann1.686LQU Arachis hypogaea HOM05D003744 ORTHO05D004327 2.9e-15 85.5 55 72.7
arahy.Tifrunner.gnm1.ann1.KM1SID Arachis hypogaea HOM05D003744 ORTHO05D004327 2.9e-15 85.5 55 72.7
Gohir.D12G138100 Gossypium hirsutum HOM05D003744 ORTHO05D004327 3.8e-15 85.1 52 69.2
Medtr7g073970 Medicago truncatula HOM05D003744 ORTHO05D004327 3.8e-15 85.1 60 65.0
RcHm_v2.0_Chr5g0044851 Rosa chinensis HOM05D003744 ORTHO05D004327 3.8e-15 85.1 55 70.9
RcHm_v2.0_Chr5g0044921 Rosa chinensis HOM05D003744 ORTHO05D004327 3.8e-15 85.1 55 70.9
Sed0024199 Sechium edule HOM05D003744 ORTHO05D004327 3.8e-15 85.1 60 70.0
ClCG10G011930 Citrullus lanatus HOM05D003744 ORTHO05D004327 5.0e-15 84.7 55 72.7
Lj1g0013770 Lotus japonicus HOM05D003744 ORTHO05D004327 5.0e-15 84.7 60 65.0
CAN.G781.16 Capsicum annuum HOM05D003744 ORTHO05D004327 6.5e-15 84.3 52 69.2
Gohir.A12G137600 Gossypium hirsutum HOM05D003744 ORTHO05D004327 6.5e-15 84.3 50 74.0
Gohir.A12G137650 Gossypium hirsutum HOM05D003744 ORTHO05D004327 6.5e-15 84.3 50 74.0
Gorai.008G149600 Gossypium raimondii HOM05D003744 ORTHO05D004327 6.5e-15 84.3 52 69.2
Manes.01G040712 Manihot esculenta HOM05D003744 ORTHO05D004327 6.5e-15 84.3 51 72.5
Sabra05G0077500 Salix brachista HOM05D003744 ORTHO05D004327 6.5e-15 84.3 55 72.7
arahy.Tifrunner.gnm1.ann1.DDPE54 Arachis hypogaea HOM05D003744 ORTHO05D004327 8.5e-15 84.0 55 70.9
arahy.Tifrunner.gnm1.ann1.G2KDP7 Arachis hypogaea HOM05D003744 ORTHO05D004327 8.5e-15 84.0 55 70.9
arahy.Tifrunner.gnm1.ann1.Z9T1G4 Arachis hypogaea HOM05D003744 ORTHO05D004327 8.5e-15 84.0 55 70.9
Thecc.02G176000 Theobroma cacao HOM05D003744 ORTHO05D004327 1.1e-14 83.6 52 69.2
TPR.G35100 Trifolium pratense HOM05D003744 ORTHO05D004327 1.5e-14 83.2 58 63.8
PGR044G0777 Punica granatum HOM05D003744 ORTHO05D004327 1.9e-14 82.8 50 74.0
TPR.G23229 Trifolium pratense HOM05D003744 ORTHO05D004327 1.9e-14 82.8 53 66.0
CANSAT78G0298 Cannabis sativa HOM05D003744 ORTHO05D004327 2.5e-14 82.4 55 69.1
Glyma.18G216400 Glycine max HOM05D003744 ORTHO05D004327 2.5e-14 82.4 55 67.3
Prupe.1G346500 Prunus persica HOM05D003744 ORTHO05D004327 2.5e-14 82.4 52 69.2
Duzib132G0180 Durio zibethinus HOM05D003744 ORTHO05D004327 3.2e-14 82.0 52 71.2
PSO170G1927 Papaver somniferum HOM05D003744 ORTHO05D004327 3.2e-14 82.0 68 58.8
VMungo1383G1042 Vigna mungo HOM05D003744 ORTHO05D004327 3.2e-14 82.0 55 65.5
Phvul.008G080300 Phaseolus vulgaris HOM05D003744 ORTHO05D004327 4.2e-14 81.6 55 67.3
MSTRG.11446 Avicennia marina HOM05D003744 ORTHO05D004327 5.5e-14 81.3 60 65.0
Lalb_Chr12g0205351 Lupinus albus HOM05D003744 ORTHO05D004327 7.2e-14 80.9 55 69.1
Os08g0322600 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 7.2e-14 80.9 60 65.0
Gorai.008G153000 Gossypium raimondii HOM05D003744 ORTHO05D004327 9.4e-14 80.5 53 69.8
Nitab4.5_0005862g0050 Nicotiana tabacum HOM05D003744 ORTHO05D004327 9.4e-14 80.5 47 76.6
Gohir.D12G141600 Gossypium hirsutum HOM05D003744 ORTHO05D004327 1.2e-13 80.1 53 69.8
RcHm_v2.0_Chr4g0446591 Rosa chinensis HOM05D003744 ORTHO05D004327 1.2e-13 80.1 55 67.3
Zm00001eb190740 Zea mays HOM05D003744 ORTHO05D004327 1.2e-13 80.1 60 65.0
Eucgr.G01369 Eucalyptus grandis HOM05D003744 ORTHO05D004327 1.6e-13 79.7 225 28.4
Os08g0389300 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 1.6e-13 79.7 60 63.3
CSS0044819 Camellia sinensis var. sinensis HOM05D003744 ORTHO05D004327 2.1e-13 79.3 55 72.7
Migut.I00018 Erythranthe guttata HOM05D003744 ORTHO05D004327 2.7e-13 79.0 55 70.9
Os08g0388900 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 2.7e-13 79.0 60 63.3
Thecc.02G161400 Theobroma cacao HOM05D003744 ORTHO05D004327 3.6e-13 78.6 55 67.3
Cc00_g30150 Coffea canephora HOM05D003744 ORTHO05D004327 4.7e-13 78.2 55 67.3
Eucgr.H03234 Eucalyptus grandis HOM05D003744 ORTHO05D004327 4.7e-13 78.2 55 65.5
Lsat_1_v5_gn_6_17921 Lactuca sativa HOM05D003744 ORTHO05D004327 4.7e-13 78.2 47 72.3
Sc23g0003470 Simmondsia chinensis HOM05D003744 ORTHO05D004327 4.7e-13 78.2 60 60.0
THA.LOC104814817 Tarenaya hassleriana HOM05D003744 ORTHO05D004327 4.7e-13 78.2 71 54.9
MD11G1112600 Malus domestica HOM05D003744 ORTHO05D004327 6.1e-13 77.8 55 67.3
HPP92_014779 Vanilla planifolia HOM05D003744 ORTHO05D004327 6.1e-13 77.8 61 59.0
Cc04_g15800 Coffea canephora HOM05D003744 ORTHO05D004327 8.0e-13 77.4 55 65.5
Cc04_g13930 Coffea canephora HOM05D003744 ORTHO05D004327 1.0e-12 77.0 55 67.3
BcaNung01074 Brassica carinata HOM05D003744 ORTHO05D004327 1.8e-12 76.3 51 62.7
A03p54630 Brassica napus HOM05D003744 ORTHO05D004327 1.8e-12 76.3 51 66.7
BcaC09g50959 Brassica carinata HOM05D003744 ORTHO05D004327 3.0e-12 75.5 51 62.7
C01p18750 Brassica napus HOM05D003744 ORTHO05D004327 3.0e-12 75.5 51 62.7
BolC1t01805H Brassica oleracea HOM05D003744 ORTHO05D004327 3.0e-12 75.5 51 62.7
BraA01t01437Z Brassica rapa HOM05D003744 ORTHO05D004327 3.0e-12 75.5 51 62.7
Thhalv10025345m.g Eutrema salsugineum HOM05D003744 ORTHO05D004327 3.0e-12 75.5 51 62.7
Aa31LG6G6900 Aethionema arabicum HOM05D003744 ORTHO05D004327 4.0e-12 75.1 51 66.7
Carub.0007s1748 Capsella rubella HOM05D003744 ORTHO05D004327 4.0e-12 75.1 51 64.7
AL7G29700 Arabidopsis lyrata HOM05D003744 ORTHO05D004327 5.2e-12 74.7 51 62.7
AT4G23660 Arabidopsis thaliana HOM05D003744 ORTHO05D004327 5.2e-12 74.7 51 62.7
A01p14960 Brassica napus HOM05D003744 ORTHO05D004327 6.8e-12 74.3 51 60.8
BcaNung03441 Brassica carinata HOM05D003744 ORTHO05D004327 8.8e-12 73.9 51 60.8
C07p52950 Brassica napus HOM05D003744 ORTHO05D004327 8.8e-12 73.9 51 60.8
BolC7t45794H Brassica oleracea HOM05D003744 ORTHO05D004327 1.2e-11 73.6 51 60.8
Sp7g21590 Schrenkiella parvula HOM05D003744 ORTHO05D004327 1.2e-11 73.6 51 60.8
Aqoxy5G02199 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 1.5e-11 73.2 61 57.4
Aqoxy94s001 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 1.5e-11 73.2 61 57.4
Aqoxy94s003 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 1.5e-11 73.2 61 57.4
BcaB03g12405 Brassica carinata HOM05D003744 ORTHO05D004327 1.5e-11 73.2 51 60.8
BcaNung03181 Brassica carinata HOM05D003744 ORTHO05D004327 1.5e-11 73.2 51 60.8
EL10Ac7g17368 Beta vulgaris HOM05D003744 ORTHO05D004327 3.4e-11 72.0 53 62.3
Dinv17603 Davidia involucrata HOM05D003744 ORTHO05D004327 7.5e-11 70.9 65 55.4
Lj1g0011441 Lotus japonicus HOM05D003744 ORTHO05D004327 9.8e-11 70.5 60 58.3
Pp3c17_13460 Physcomitrium patens HOM05D003744 ORTHO05D004327 9.8e-11 70.5 57 61.4
vmacro07295 Vaccinium macrocarpon HOM05D003744 ORTHO05D004327 1.7e-10 69.7 69 52.2
Hund23867 Selenicereus undatus HOM05D003744 ORTHO05D004327 3.7e-10 68.6 67 55.2
Haze_11743 Corylus avellana HOM05D003744 ORTHO05D004327 4.8e-10 68.2 39 74.4
Mapoly0100s0056 Marchantia polymorpha HOM05D003744 ORTHO05D004327 4.8e-10 68.2 59 54.2
Rhsim09G0044700 Rhododendron simsii HOM05D003744 ORTHO05D004327 4.8e-10 68.2 67 53.7
TWI53G1336 Tripterygium wilfordii HOM05D003744 ORTHO05D004327 4.8e-10 68.2 66 53.0
AagrBONN_evm.TU.Sc2ySwM_340.154 Anthoceros agrestis HOM05D003744 ORTHO05D004327 1.1e-09 67.0 57 52.6
TAR374G1448 Trochodendron aralioides HOM05D003744 ORTHO05D004327 1.1e-09 67.0 61 52.5
CBR_g5669 Chara braunii HOM05D003744 ORTHO05D004327 2.4e-09 65.9 71 47.9
FAN07G0518 Fragaria x ananassa HOM05D003744 ORTHO05D004327 2.4e-09 65.9 46 63.0
FAN12G4043 Fragaria x ananassa HOM05D003744 ORTHO05D004327 2.4e-09 65.9 46 63.0
FAN17G0528 Fragaria x ananassa HOM05D003744 ORTHO05D004327 2.4e-09 65.9 46 63.0
RhsimUnG0157000 Rhododendron simsii HOM05D003744 ORTHO05D004327 2.4e-09 65.9 67 52.2
RcHm_v2.0_Chr5g0044931 Rosa chinensis HOM05D003744 ORTHO05D004327 3.1e-09 65.5 53 54.7
SalBow1G2569 Salvia bowleyana HOM05D003744 ORTHO05D004327 3.1e-09 65.5 54 59.3
SalBow1G6149 Salvia bowleyana HOM05D003744 ORTHO05D004327 3.1e-09 65.5 54 59.3
SMO164G0212 Selaginella moellendorffii HOM05D003744 ORTHO05D004327 3.1e-09 65.5 72 47.2
Oeu024760.1 Olea europaea HOM05D003744 ORTHO05D004327 5.4e-09 64.7 54 53.7
SGA_v2.0_scaffold90G27943 Striga asiatica HOM05D003744 ORTHO05D004327 5.4e-09 64.7 39 71.8
BcaC01g00486 Brassica carinata HOM05D003744 ORTHO05D004327 7.0e-09 64.3 43 65.1
Cpa.g.sc5.29 Carica papaya HOM05D003744 ORTHO05D004327 7.0e-09 64.3 64 56.2
Migut.H00604 Erythranthe guttata HOM05D003744 ORTHO05D004327 7.0e-09 64.3 35 77.1
AUR62036656 Chenopodium quinoa HOM05D003744 ORTHO05D004327 9.1e-09 63.9 37 70.3
MD11G1112700 Malus domestica HOM05D003744 ORTHO05D004327 9.1e-09 63.9 75 45.3
Ah.15g093700 Amaranthus hybridus HOM05D003744 ORTHO05D004327 1.6e-08 63.2 67 46.3
Potri.005G093700 Populus trichocarpa HOM05D003744 ORTHO05D004327 1.6e-08 63.2 48 58.3
Migut.N01582 Erythranthe guttata HOM05D003744 ORTHO05D004327 2.0e-08 62.8 49 59.2
SHI31057 Sapria himalayana HOM05D000482 ORTHO05D000349 2.0e-08 62.8 64 42.2
CARHR231030 Cardamine hirsuta HOM05D003744 ORTHO05D004327 2.7e-08 62.4 60 53.3
Lalb_Chr12g0204291 Lupinus albus HOM05D003744 ORTHO05D004327 5.9e-08 61.2 52 57.7
QL08p053645 Quercus lobata HOM05D003744 ORTHO05D004327 5.9e-08 61.2 63 50.8
Sopen03g033400 Solanum pennellii HOM05D003744 ORTHO05D004327 5.9e-08 61.2 42 59.5
unitig_52.g17488 Utricularia gibba HOM05D003744 ORTHO05D004327 7.7e-08 60.8 62 53.2
Duzib132G0191 Durio zibethinus HOM05D003744 ORTHO05D004327 1.0e-07 60.5 65 44.6
Nitab4.5_0000852g0010 Nicotiana tabacum HOM05D003744 ORTHO05D004327 1.0e-07 60.5 52 51.9
Solyc03g114300.4 Solanum lycopersicum HOM05D003744 ORTHO05D004327 1.0e-07 60.5 42 59.5
ATR1100G008 Amborella trichopoda HOM05D003744 ORTHO05D004327 1.7e-07 59.7 42 57.1
TAR374G0013 Trochodendron aralioides HOM05D003744 ORTHO05D004327 1.7e-07 59.7 34 76.5
C03p80520 Brassica napus HOM05D003744 ORTHO05D004327 2.3e-07 59.3 43 62.8
CDE05G3331 Ceratophyllum demersum HOM05D003744 ORTHO05D004327 5.0e-07 58.2 63 46.0
BraA03t14530Z Brassica rapa HOM05D003744 ORTHO05D004327 6.6e-07 57.8 37 67.6
DCAR_026463 Daucus carota HOM05D003744 ORTHO05D004327 6.6e-07 57.8 44 59.1
Lj2g0000279 Lotus japonicus HOM05D003744 ORTHO05D004327 8.6e-07 57.4 60 48.3
TPR.G24330 Trifolium pratense HOM05D003744 ORTHO05D004327 1.5e-06 56.6 36 66.7
A08p21950 Brassica napus HOM05D003744 ORTHO05D004327 1.9e-06 56.2 37 62.2
Glyma.09G272651 Glycine max HOM05D003744 ORTHO05D004327 3.3e-06 55.5 49 49.0
Medtr3g111660 Medicago truncatula HOM05D003744 ORTHO05D004327 4.2e-06 55.1 64 43.8
BolC3t20296H Brassica oleracea HOM05D003744 ORTHO05D004327 5.5e-06 54.7 37 62.2


User provided reference genes

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