Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G00792 Aquilegia oxysepala HOM05D005806 ORTHO05D007119 5.1e-263 910.6 486 100.0
Nn4g25745 Nelumbo nucifera HOM05D005806 ORTHO05D007119 2.0e-121 440.3 530 53.4
TAR365G0831 Trochodendron aralioides HOM05D005806 ORTHO05D007119 4.4e-121 439.1 522 54.4
ClCG05G006280 Citrullus lanatus HOM05D005806 ORTHO05D007119 1.3e-120 437.6 507 53.6
CSS0028282 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 3.1e-119 433.0 511 54.2
TAR365G0056 Trochodendron aralioides HOM05D005806 ORTHO05D007119 3.1e-119 433.0 519 53.8
Thecc.04G290100 Theobroma cacao HOM05D005806 ORTHO05D007119 1.2e-115 421.0 514 53.5
TWI09G1342 Tripterygium wilfordii HOM05D005806 ORTHO05D007119 1.4e-114 417.5 518 52.1
Atru.chr4.2914 Acer truncatum HOM05D005806 ORTHO05D007119 1.2e-113 414.5 517 52.4
Duzib212G0552 Durio zibethinus HOM05D005806 ORTHO05D007119 1.2e-113 414.5 517 52.0
DCAR_002485 Daucus carota HOM05D005806 ORTHO05D007119 3.4e-113 412.9 503 52.3
Duzib151G0580 Durio zibethinus HOM05D005806 ORTHO05D007119 9.8e-113 411.4 526 51.5
Gorai.011G193400 Gossypium raimondii HOM05D005806 ORTHO05D007119 8.3e-112 408.3 538 50.6
Hund20516 Selenicereus undatus HOM05D005806 ORTHO05D007119 2.4e-111 406.8 517 51.8
AUR62018055 Chenopodium quinoa HOM05D005806 ORTHO05D007119 7.0e-111 405.2 516 52.1
EL10Ac3g06659 Beta vulgaris HOM05D005806 ORTHO05D007119 2.7e-110 403.3 485 53.8
Dinv44345 Davidia involucrata HOM05D005806 ORTHO05D007119 1.0e-109 401.4 447 53.9
FAN12G2548 Fragaria x ananassa HOM05D005806 ORTHO05D007119 1.0e-109 401.4 511 51.9
Carub.0003s1647 Capsella rubella HOM05D005806 ORTHO05D007119 5.0e-109 399.1 535 50.7
Lsat_1_v5_gn_6_78121 Lactuca sativa HOM05D005806 ORTHO05D007119 5.0e-109 399.1 533 50.7
FvH4_4g18770 Fragaria vesca HOM05D005806 ORTHO05D007119 6.6e-109 398.7 511 51.7
FAN12G3921 Fragaria x ananassa HOM05D005806 ORTHO05D007119 6.6e-109 398.7 511 51.7
Lj3A825T23 Lonicera japonica HOM05D005806 ORTHO05D007119 2.5e-108 396.7 540 50.4
HanXRQChr03g0084151 Helianthus annuus HOM05D005806 ORTHO05D007119 3.3e-108 396.4 558 48.9
Nn3g21558 Nelumbo nucifera HOM05D005806 ORTHO05D007119 3.3e-108 396.4 537 50.7
AT3G16760 Arabidopsis thaliana HOM05D005806 ORTHO05D007119 1.2e-107 394.4 513 50.7
Ah.13g074780 Amaranthus hybridus HOM05D005806 ORTHO05D007119 1.0e-106 391.3 529 50.3
CARHR092010 Cardamine hirsuta HOM05D005806 ORTHO05D007119 1.0e-106 391.3 525 50.7
GSVIVG01035100001 Vitis vinifera HOM05D005806 ORTHO05D007119 2.3e-106 390.2 500 50.2
Ciclev10004804m.g Citrus clementina HOM05D005806 ORTHO05D007119 4.0e-106 389.4 533 50.1
arahy.Tifrunner.gnm1.ann1.TZ6N57 Arachis hypogaea HOM05D005806 ORTHO05D007119 5.2e-106 389.0 462 51.5
PSO832G4515 Papaver somniferum HOM05D005806 ORTHO05D007119 6.8e-106 388.7 425 55.1
Solyc01g066050.3 Solanum lycopersicum HOM05D005806 ORTHO05D007119 1.5e-105 387.5 549 47.5
PGSC0003DMG400016813 Solanum tuberosum HOM05D005806 ORTHO05D007119 1.5e-105 387.5 516 49.2
COL.COLO4_13808 Corchorus olitorius HOM05D005806 ORTHO05D007119 2.0e-105 387.1 537 47.3
Manes.15G010100 Manihot esculenta HOM05D005806 ORTHO05D007119 2.6e-105 386.7 526 47.7
TWI73G0620 Tripterygium wilfordii HOM05D005806 ORTHO05D007119 9.8e-105 384.8 467 51.8
PSO210G6439 Papaver somniferum HOM05D005806 ORTHO05D007119 1.3e-104 384.4 425 54.6
MD16G1163000 Malus domestica HOM05D005806 ORTHO05D007119 1.7e-104 384.0 512 50.8
Sp3g15010 Schrenkiella parvula HOM05D005806 ORTHO05D007119 2.9e-104 383.3 541 48.4
Sopen01g027600 Solanum pennellii HOM05D005806 ORTHO05D007119 4.9e-104 382.5 549 47.2
FAN07G1609 Fragaria x ananassa HOM05D005806 ORTHO05D007119 6.4e-104 382.1 511 50.3
Thhalv10020624m.g Eutrema salsugineum HOM05D005806 ORTHO05D007119 2.4e-103 380.2 523 48.9
Cpa.g.sc50.151 Carica papaya HOM05D005806 ORTHO05D007119 3.2e-103 379.8 517 48.7
Sed0007282 Sechium edule HOM05D005806 ORTHO05D007119 5.4e-103 379.0 509 47.5
Manes.03G199200 Manihot esculenta HOM05D005806 ORTHO05D007119 1.3e-101 374.4 534 47.4
Nitab4.5_0012392g0010 Nicotiana tabacum HOM05D005806 ORTHO05D007119 1.7e-101 374.0 486 52.7
Nitab4.5_0002215g0010 Nicotiana tabacum HOM05D005806 ORTHO05D007119 3.9e-101 372.9 532 49.6
Cfa015433 Carpinus fangiana HOM05D005806 ORTHO05D007119 6.6e-101 372.1 533 48.0
FAN17G0801 Fragaria x ananassa HOM05D005806 ORTHO05D007119 6.6e-101 372.1 511 50.1
Sc13g0003160 Simmondsia chinensis HOM05D005806 ORTHO05D007119 8.6e-101 371.7 458 51.3
QL06p010760 Quercus lobata HOM05D005806 ORTHO05D007119 1.5e-100 370.9 533 49.2
Glyma.07G244900 Glycine max HOM05D005806 ORTHO05D007119 1.9e-100 370.5 442 52.7
Haze_01151 Corylus avellana HOM05D005806 ORTHO05D007119 2.5e-100 370.2 485 50.5
CSS0038808 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 1.6e-99 367.5 493 49.7
CSS0004144 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 3.6e-99 366.3 493 49.9
Aa31LG8G3830 Aethionema arabicum HOM05D005806 ORTHO05D007119 4.7e-99 365.9 529 46.5
vmacro23238 Vaccinium macrocarpon HOM05D005806 ORTHO05D007119 2.3e-98 363.6 567 45.5
SGA_v2.0_scaffold91G28032 Striga asiatica HOM05D005806 ORTHO05D007119 1.5e-97 360.9 525 50.3
MBI18_g21793_MAGBIO Magnolia biondii HOM05D005806 ORTHO05D007119 2.0e-97 360.5 508 47.0
Eucgr.B01574 Eucalyptus grandis HOM05D005806 ORTHO05D007119 2.6e-97 360.1 538 48.7
Cc03_g01460 Coffea canephora HOM05D005806 ORTHO05D007119 9.8e-97 358.2 543 47.9
Gohir.D10G172900 Gossypium hirsutum HOM05D005806 ORTHO05D007119 9.8e-97 358.2 538 46.1
VMungo1215G2854 Vigna mungo HOM05D005806 ORTHO05D007119 9.8e-97 358.2 442 49.3
C01p47550 Brassica napus HOM05D005806 ORTHO05D007119 1.9e-95 354.0 522 49.0
BolC1t04724H Brassica oleracea HOM05D005806 ORTHO05D007119 2.4e-95 353.6 520 49.2
MELO3C006687.2 Cucumis melo HOM05D005806 ORTHO05D007119 2.0e-94 350.5 504 46.2
Prupe.1G130400 Prunus persica HOM05D005806 ORTHO05D007119 3.5e-94 349.7 520 46.7
Sabra10G0005700 Salix brachista HOM05D005806 ORTHO05D007119 1.0e-93 348.2 515 48.3
Potri.010G007000 Populus trichocarpa HOM05D005806 ORTHO05D007119 3.9e-93 346.3 515 48.2
CiPaw.01G145000 Carya illinoinensis HOM05D005806 ORTHO05D007119 5.0e-93 345.9 482 47.5
Peaxi162Scf00065g01121 Petunia axillaris HOM05D005806 ORTHO05D007119 5.0e-93 345.9 533 46.5
TAR633G1904 Trochodendron aralioides HOM05D005806 ORTHO05D007119 6.6e-93 345.5 291 63.9
Ca_21476_v3 Cicer arietinum L. HOM05D005806 ORTHO05D007119 1.1e-92 344.7 506 49.4
Migut.N00070 Erythranthe guttata HOM05D005806 ORTHO05D007119 1.1e-92 344.7 513 49.5
HPP92_002231 Vanilla planifolia HOM05D005806 ORTHO05D007119 1.1e-92 344.7 470 47.9
RcHm_v2.0_Chr4g0423561 Rosa chinensis HOM05D005806 ORTHO05D007119 1.5e-92 344.4 517 48.5
Oeu054004.1 Olea europaea HOM05D005806 ORTHO05D007119 1.9e-92 344.0 503 47.3
CANSAT78G0145 Cannabis sativa HOM05D005806 ORTHO05D007119 3.3e-92 343.2 497 46.3
Medtr4g120360 Medicago truncatula HOM05D005806 ORTHO05D007119 9.5e-92 341.7 510 49.4
ECA240G3979 Erigeron canadensis HOM05D005806 ORTHO05D007119 1.2e-91 341.3 423 53.0
Glyma.17G028900 Glycine max HOM05D005806 ORTHO05D007119 8.1e-91 338.6 446 50.0
CAN.G14.19 Capsicum annuum HOM05D005806 ORTHO05D007119 1.4e-90 337.8 511 45.6
THA.LOC104802587 Tarenaya hassleriana HOM05D005806 ORTHO05D007119 5.2e-90 335.9 538 47.0
PGR031G2493 Punica granatum HOM05D005806 ORTHO05D007119 7.5e-89 332.0 485 47.8
Oeu006424.1 Olea europaea HOM05D005806 ORTHO05D007119 1.3e-88 331.3 525 45.7
Lj4g0013254 Lotus japonicus HOM05D005806 ORTHO05D007119 6.4e-88 328.9 439 50.1
CsaV3_3G014910 Cucumis sativus L. HOM05D005806 ORTHO05D007119 1.1e-87 328.2 469 47.5
Actinidia40301 Actinidia chinensis HOM05D005806 ORTHO05D007119 3.2e-87 326.6 466 48.1
CDE12G0749 Ceratophyllum demersum HOM05D005806 ORTHO05D007119 3.2e-87 326.6 537 44.7
BraA01t03813Z Brassica rapa HOM05D005806 ORTHO05D007119 9.2e-87 325.1 510 47.6
BcaC09g48634 Brassica carinata HOM05D005806 ORTHO05D007119 2.1e-86 323.9 516 47.1
Gohir.A10G166900 Gossypium hirsutum HOM05D005806 ORTHO05D007119 6.0e-86 322.4 481 45.3
A01p37530 Brassica napus HOM05D005806 ORTHO05D007119 3.3e-84 316.6 513 46.4
SalBow5G0238 Salvia bowleyana HOM05D005806 ORTHO05D007119 1.2e-83 314.7 589 41.6
Psat4g025560 Pisum sativum HOM05D005806 ORTHO05D007119 3.6e-83 313.2 446 47.5
MSTRG.10119 Avicennia marina HOM05D005806 ORTHO05D007119 4.7e-83 312.8 485 46.0
Os03g0340700 Oryza sativa ssp. japonica HOM05D005806 ORTHO05D007119 6.8e-82 308.9 529 43.3
SEGI_25850 Sequoiadendron giganteum HOM05D005806 ORTHO05D007119 1.9e-79 300.8 596 41.4
AUR62015254 Chenopodium quinoa HOM05D005806 ORTHO05D007119 1.0e-77 295.0 280 60.0
TAR362G1179 Trochodendron aralioides HOM05D005806 ORTHO05D007119 1.0e-77 295.0 312 55.1
Phvul.003G107800 Phaseolus vulgaris HOM05D005806 ORTHO05D007119 9.6e-76 288.5 448 43.8
arahy.Tifrunner.gnm1.ann1.T7VR84 Arachis hypogaea HOM05D005806 ORTHO05D007119 1.2e-73 281.6 293 53.6
Lalb_Chr07g0182271 Lupinus albus HOM05D005806 ORTHO05D007119 2.6e-73 280.4 495 43.2
CDE01G0725 Ceratophyllum demersum HOM05D005806 ORTHO05D007119 1.0e-69 268.5 492 38.2
MD13G1163500 Malus domestica HOM05D005806 ORTHO05D007119 5.3e-66 256.1 289 54.3
Dinv29717 Davidia involucrata HOM05D005806 ORTHO05D007119 9.9e-65 251.9 287 51.6
Zm00001eb016320 Zea mays HOM05D005806 ORTHO05D007119 2.4e-63 247.3 529 38.0
Rhsim04G0227400 Rhododendron simsii HOM05D005806 ORTHO05D007119 4.6e-62 243.0 348 45.4
HanXRQChr13g0413981 Helianthus annuus HOM05D005806 ORTHO05D007119 2.4e-58 230.7 152 75.0
Lalb_Chr13g0298181 Lupinus albus HOM05D005806 ORTHO05D007119 2.3e-53 214.2 233 54.1
AL3G29680 Arabidopsis lyrata HOM05D005806 ORTHO05D007119 9.7e-44 182.2 313 45.0
SMO334G0099 Selaginella moellendorffii HOM05D005806 ORTHO05D007119 1.1e-42 178.7 417 36.2
unitig_699.g19987 Utricularia gibba HOM05D005806 ORTHO05D007119 1.0e-40 172.2 520 34.4
TAR633G1627 Trochodendron aralioides HOM05D005806 ORTHO05D007119 8.5e-40 169.1 186 61.3
HPP92_002153 Vanilla planifolia HOM05D005806 ORTHO05D007119 1.3e-35 155.2 96 77.1
Pp3c12_16600 Physcomitrium patens HOM05D005806 ORTHO05D007119 1.7e-35 154.8 397 34.8
Dinv29718 Davidia involucrata HOM05D000037 ORTHO05D000150 5.9e-33 146.4 137 63.5
Mapoly0005s0119 Marchantia polymorpha HOM05D005806 ORTHO05D007119 1.1e-31 142.1 544 30.3
AagrBONN_evm.TU.Sc2ySwM_228.3483 Anthoceros agrestis HOM05D005806 ORTHO05D007119 8.8e-29 132.5 199 42.2
TAR362G0821 Trochodendron aralioides HOM05D005806 ORTHO05D007119 8.8e-29 132.5 168 53.6
AUR62015253 Chenopodium quinoa HOM05D005806 ORTHO05D007119 2.6e-28 131.0 166 52.4
CSS0010946 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 1.3e-24 118.6 72 77.8
CBR_g4056 Chara braunii HOM05D005806 ORTHO05D007119 2.2e-24 117.9 184 40.2
SGA_v2.0_scaffold119G32699 Striga asiatica HOM05D005806 ORTHO05D007119 2.5e-23 114.4 231 40.7
CSS0023833 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 2.1e-22 111.3 72 75.0
Pp3c4_12130 Physcomitrium patens HOM05D005806 ORTHO05D007119 1.6e-17 95.1 352 31.0
FAN15G2853 Fragaria x ananassa HOM05D005806 ORTHO05D007119 1.6e-14 85.1 59 67.8
FvH4_5g32480 Fragaria vesca HOM05D005806 ORTHO05D007119 3.6e-14 84.0 115 52.2
CBR_g31779 Chara braunii HOM05D000019 ORTHO05D000002 1.3e-11 75.5 93 36.6
CBR_g39021 Chara braunii HOM05D000003 ORTHO05D000004 2.4e-10 71.2 90 33.3
Nn2g15616 Nelumbo nucifera HOM05D005806 ORTHO05D007119 4.1e-10 70.5 44 70.5
TPR.G23301 Trifolium pratense HOM05D003946 ORTHO05D004485 2.2e-08 64.7 130 30.8
Medtr7g059150 Medicago truncatula HOM05D003946 ORTHO05D004485 8.5e-08 62.8 126 30.2
Psat3g143400 Pisum sativum HOM05D003946 ORTHO05D004485 8.5e-08 62.8 126 31.0
FAN21G2611 Fragaria x ananassa HOM05D003946 ORTHO05D004485 1.5e-07 62.0 183 27.9
CDE02G3171 Ceratophyllum demersum HOM05D003946 ORTHO05D004485 1.9e-07 61.6 191 25.7
Lj5A239G80 Lonicera japonica HOM05D001310 ORTHO05D001283 4.2e-07 60.5 137 29.9
ATR0564G362 Amborella trichopoda HOM05D001310 ORTHO05D001283 5.5e-07 60.1 125 33.6
CDE04G0594 Ceratophyllum demersum HOM05D003946 ORTHO05D004485 5.5e-07 60.1 180 26.7
Nitab4.5_0004556g0020 Nicotiana tabacum HOM05D001310 ORTHO05D001283 7.2e-07 59.7 122 32.8
Psat5g270480 Pisum sativum HOM05D003946 ORTHO05D004485 7.2e-07 59.7 128 27.3
Solyc10g047300.2 Solanum lycopersicum HOM05D001310 ORTHO05D001283 9.4e-07 59.3 131 31.3
Lalb_Chr19g0139711 Lupinus albus HOM05D002345 ORTHO05D002391 1.2e-06 58.9 128 33.6
Sopen10g017560 Solanum pennellii HOM05D001310 ORTHO05D001283 1.2e-06 58.9 131 30.5
Nitab4.5_0003401g0010 Nicotiana tabacum HOM05D001310 ORTHO05D001283 2.7e-06 57.8 122 31.1
Sc18g0006830 Simmondsia chinensis HOM05D001310 ORTHO05D001283 2.7e-06 57.8 133 30.8
Medtr4g076240 Medicago truncatula HOM05D002345 ORTHO05D002391 3.6e-06 57.4 101 34.7
Cc01_g06230 Coffea canephora HOM05D002345 ORTHO05D002391 4.7e-06 57.0 144 29.9
CANSAT54G0547 Cannabis sativa HOM05D002345 ORTHO05D002391 6.1e-06 56.6 101 33.7
QL01p003745 Quercus lobata HOM05D002345 ORTHO05D002391 6.1e-06 56.6 149 30.2
Sabra09G0036800 Salix brachista HOM05D002345 ORTHO05D002391 8.0e-06 56.2 113 31.9


User provided reference genes

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