Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G00612 Aquilegia oxysepala HOM05D004868 ORTHO05D006030 6.7e-161 570.9 274 100.0
PSO170G6220 Papaver somniferum HOM05D004868 ORTHO05D006030 2.4e-134 482.6 263 85.9
PSO210G5882 Papaver somniferum HOM05D004868 ORTHO05D006030 2.4e-134 482.6 263 85.9
TWI12G1223 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 1.4e-129 466.8 270 82.2
Ah.06g192760 Amaranthus hybridus HOM05D004868 ORTHO05D006030 3.0e-129 465.7 273 81.3
Ah.04g160130 Amaranthus hybridus HOM05D004868 ORTHO05D006030 1.5e-128 463.4 273 81.7
Potri.005G046300 Populus trichocarpa HOM05D004868 ORTHO05D006030 2.0e-128 463.0 267 83.5
Rhsim05G0148800 Rhododendron simsii HOM05D004868 ORTHO05D006030 2.0e-128 463.0 267 83.5
TAR636G1948 Trochodendron aralioides HOM05D004868 ORTHO05D006030 7.4e-128 461.1 271 83.8
CSS0010529 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 1.7e-127 459.9 271 81.9
TWI36G0026 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 1.7e-127 459.9 267 81.6
Actinidia33836 Actinidia chinensis HOM05D004868 ORTHO05D006030 3.7e-127 458.8 264 83.3
EL10Ac4g09208 Beta vulgaris HOM05D004868 ORTHO05D006030 3.7e-127 458.8 273 81.0
QL03p000506 Quercus lobata HOM05D004868 ORTHO05D006030 3.7e-127 458.8 265 81.5
HanXRQChr05g0161431 Helianthus annuus HOM05D004868 ORTHO05D006030 6.3e-127 458.0 274 80.3
Hma1.2p1_0332F.1_g127880 Hydrangea macrophylla HOM05D004868 ORTHO05D006030 8.2e-127 457.6 267 81.6
Medtr4g025410 Medicago truncatula HOM05D004868 ORTHO05D006030 8.2e-127 457.6 271 79.3
ECA246G2619 Erigeron canadensis HOM05D004868 ORTHO05D006030 1.8e-126 456.4 267 80.5
Nitab4.5_0002840g0160 Nicotiana tabacum HOM05D004868 ORTHO05D006030 1.8e-126 456.4 274 79.9
QL03p000170 Quercus lobata HOM05D004868 ORTHO05D006030 2.4e-126 456.1 264 81.4
Ca_13816_v3 Cicer arietinum L. HOM05D004868 ORTHO05D006030 3.1e-126 455.7 271 79.3
Nitab4.5_0002361g0200 Nicotiana tabacum HOM05D004868 ORTHO05D006030 4.1e-126 455.3 274 79.6
Phvul.010G080900 Phaseolus vulgaris HOM05D004868 ORTHO05D006030 4.1e-126 455.3 273 79.9
Atru.chr2.656 Acer truncatum HOM05D004868 ORTHO05D006030 6.9e-126 454.5 267 80.1
AUR62005015 Chenopodium quinoa HOM05D004868 ORTHO05D006030 6.9e-126 454.5 274 79.9
CSS0039857 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 9.1e-126 454.1 267 81.6
CAN.G134.187 Capsicum annuum HOM05D004868 ORTHO05D006030 9.1e-126 454.1 267 80.1
Manes.09G157900 Manihot esculenta HOM05D004868 ORTHO05D006030 9.1e-126 454.1 270 79.3
TPR.G7590 Trifolium pratense HOM05D004868 ORTHO05D006030 9.1e-126 454.1 271 78.6
Potri.013G034000 Populus trichocarpa HOM05D004868 ORTHO05D006030 1.2e-125 453.8 267 83.5
Haze_04309 Corylus avellana HOM05D004868 ORTHO05D006030 1.5e-125 453.4 266 80.1
DCAR_022833 Daucus carota HOM05D004868 ORTHO05D006030 2.0e-125 453.0 266 80.5
Lalb_Chr13g0291821 Lupinus albus HOM05D004868 ORTHO05D006030 2.0e-125 453.0 273 79.5
CSS0000773 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 3.4e-125 452.2 273 80.2
CSS0028974 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 3.4e-125 452.2 267 81.6
Sabra05G0042300 Salix brachista HOM05D004868 ORTHO05D006030 3.4e-125 452.2 267 81.3
Solyc01g098040.3 Solanum lycopersicum HOM05D004868 ORTHO05D006030 4.5e-125 451.8 267 79.8
GSVIVG01021894001 Vitis vinifera HOM05D004868 ORTHO05D006030 4.5e-125 451.8 239 87.9
Cc02_g31280 Coffea canephora HOM05D004868 ORTHO05D006030 7.7e-125 451.1 265 80.4
Eucgr.H04401 Eucalyptus grandis HOM05D004868 ORTHO05D006030 7.7e-125 451.1 264 80.3
Gohir.A11G257000 Gossypium hirsutum HOM05D004868 ORTHO05D006030 7.7e-125 451.1 267 81.3
Oeu012475.1 Olea europaea HOM05D004868 ORTHO05D006030 7.7e-125 451.1 267 80.9
Sp3g03920 Schrenkiella parvula HOM05D004868 ORTHO05D006030 7.7e-125 451.1 271 78.6
Sopen01g041620 Solanum pennellii HOM05D004868 ORTHO05D006030 7.7e-125 451.1 267 79.8
MD04G1217100 Malus domestica HOM05D004868 ORTHO05D006030 1.0e-124 450.7 263 80.6
PGSC0003DMG400022466 Solanum tuberosum HOM05D004868 ORTHO05D006030 1.0e-124 450.7 267 79.4
Cfa006482 Carpinus fangiana HOM05D004868 ORTHO05D006030 1.3e-124 450.3 266 79.7
Thhalv10021106m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 1.3e-124 450.3 271 79.3
Lsat_1_v5_gn_9_40320 Lactuca sativa HOM05D004868 ORTHO05D006030 1.3e-124 450.3 271 78.2
PGR004G1913 Punica granatum HOM05D004868 ORTHO05D006030 1.3e-124 450.3 267 79.4
C03p41370 Brassica napus HOM05D004868 ORTHO05D006030 1.7e-124 449.9 272 78.7
Lj3g0018370 Lotus japonicus HOM05D004868 ORTHO05D006030 2.2e-124 449.5 273 78.8
SalBow2G0736 Salvia bowleyana HOM05D004868 ORTHO05D006030 2.2e-124 449.5 274 78.8
BolC3t16420H Brassica oleracea HOM05D004868 ORTHO05D006030 3.8e-124 448.7 272 78.3
Prupe.6G337200 Prunus persica HOM05D004868 ORTHO05D006030 3.8e-124 448.7 263 80.2
Aa31LG5G15350 Aethionema arabicum HOM05D004868 ORTHO05D006030 5.0e-124 448.4 271 78.6
BraA03t12574Z Brassica rapa HOM05D004868 ORTHO05D006030 5.0e-124 448.4 272 78.3
BcaC01g04334 Brassica carinata HOM05D004868 ORTHO05D006030 6.5e-124 448.0 272 78.3
Ciclev10001724m.g Citrus clementina HOM05D004868 ORTHO05D006030 6.5e-124 448.0 275 78.5
Migut.B00327 Erythranthe guttata HOM05D004868 ORTHO05D006030 6.5e-124 448.0 273 79.9
AT3G05100 Arabidopsis thaliana HOM05D004868 ORTHO05D006030 8.5e-124 447.6 271 78.6
HanXRQChr14g0447091 Helianthus annuus HOM05D004868 ORTHO05D006030 8.5e-124 447.6 275 78.5
A03p33990 Brassica napus HOM05D004868 ORTHO05D006030 1.1e-123 447.2 272 78.3
CANSAT54G1013 Cannabis sativa HOM05D004868 ORTHO05D006030 1.1e-123 447.2 267 79.8
Gorai.007G286600 Gossypium raimondii HOM05D004868 ORTHO05D006030 1.9e-123 446.4 267 80.1
AL3G15480 Arabidopsis lyrata HOM05D004868 ORTHO05D006030 2.5e-123 446.0 271 78.2
arahy.Tifrunner.gnm1.ann1.VSGL27 Arachis hypogaea HOM05D004868 ORTHO05D006030 2.5e-123 446.0 266 80.1
TPR.G39359 Trifolium pratense HOM05D004868 ORTHO05D006030 2.5e-123 446.0 271 77.9
MD12G1234100 Malus domestica HOM05D004868 ORTHO05D006030 3.2e-123 445.7 263 80.2
Gohir.D11G266800 Gossypium hirsutum HOM05D004868 ORTHO05D006030 4.2e-123 445.3 267 80.1
SGA_v2.0_scaffold146G36132 Striga asiatica HOM05D004868 ORTHO05D006030 4.2e-123 445.3 273 77.3
arahy.Tifrunner.gnm1.ann1.WET4Y7 Arachis hypogaea HOM05D004868 ORTHO05D006030 5.5e-123 444.9 266 80.1
Glyma.01G139000 Glycine max HOM05D004868 ORTHO05D006030 7.2e-123 444.5 260 80.8
CiPaw.07G009000 Carya illinoinensis HOM05D004868 ORTHO05D006030 9.4e-123 444.1 266 80.1
BcaB04g21374 Brassica carinata HOM05D004868 ORTHO05D006030 1.6e-122 443.4 269 77.7
RcHm_v2.0_Chr3g0452511 Rosa chinensis HOM05D004868 ORTHO05D006030 1.6e-122 443.4 266 78.6
Carub.0003s0434 Capsella rubella HOM05D004868 ORTHO05D006030 2.1e-122 443.0 269 77.3
Glyma.03G028300 Glycine max HOM05D004868 ORTHO05D006030 2.7e-122 442.6 263 79.5
Thecc.05G291500 Theobroma cacao HOM05D004868 ORTHO05D006030 2.7e-122 442.6 267 79.4
BcaNung04260 Brassica carinata HOM05D004868 ORTHO05D006030 3.6e-122 442.2 271 76.8
Duzib177G0825 Durio zibethinus HOM05D004868 ORTHO05D006030 3.6e-122 442.2 265 81.1
FAN02G0279 Fragaria x ananassa HOM05D004868 ORTHO05D006030 3.6e-122 442.2 266 78.9
Hund07000 Selenicereus undatus HOM05D004868 ORTHO05D006030 3.6e-122 442.2 296 73.3
MSTRG.13789 Avicennia marina HOM05D004868 ORTHO05D006030 4.7e-122 441.8 274 77.7
Peaxi162Scf00225g00143 Petunia axillaris HOM05D004868 ORTHO05D006030 6.1e-122 441.4 257 81.7
Lalb_Chr12g0208121 Lupinus albus HOM05D004868 ORTHO05D006030 7.9e-122 441.0 273 77.3
C05p62140 Brassica napus HOM05D004868 ORTHO05D006030 1.0e-121 440.7 273 77.7
BolC5t34872H Brassica oleracea HOM05D004868 ORTHO05D006030 1.0e-121 440.7 273 77.7
FAN09G4706 Fragaria x ananassa HOM05D004868 ORTHO05D006030 1.8e-121 439.9 266 78.6
Lj9A672G84 Lonicera japonica HOM05D004868 ORTHO05D006030 1.8e-121 439.9 239 84.9
A05p42480 Brassica napus HOM05D004868 ORTHO05D006030 2.3e-121 439.5 272 77.2
C07p40470 Brassica napus HOM05D004868 ORTHO05D006030 2.3e-121 439.5 271 76.4
BolC7t44582H Brassica oleracea HOM05D004868 ORTHO05D006030 2.3e-121 439.5 271 76.4
BraA05t23004Z Brassica rapa HOM05D004868 ORTHO05D006030 2.3e-121 439.5 272 77.2
FAN05G2179 Fragaria x ananassa HOM05D004868 ORTHO05D006030 2.3e-121 439.5 266 78.2
FAN05G5662 Fragaria x ananassa HOM05D004868 ORTHO05D006030 2.3e-121 439.5 266 78.2
FAN14G3773 Fragaria x ananassa HOM05D004868 ORTHO05D006030 2.3e-121 439.5 266 78.2
BraA06t26695Z Brassica rapa HOM05D004868 ORTHO05D006030 3.0e-121 439.1 272 76.5
FvH4_6g03940 Fragaria vesca HOM05D004868 ORTHO05D006030 8.8e-121 437.6 266 78.2
Sed0014615 Sechium edule HOM05D004868 ORTHO05D006030 8.8e-121 437.6 267 78.3
CiPaw.08G177900 Carya illinoinensis HOM05D004868 ORTHO05D006030 1.1e-120 437.2 268 77.6
MBI18_g14729_MAGBIO Magnolia biondii HOM05D004868 ORTHO05D006030 1.1e-120 437.2 271 77.5
Sp2g20350 Schrenkiella parvula HOM05D004868 ORTHO05D006030 1.1e-120 437.2 271 76.8
Thhalv10004543m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 3.3e-120 435.6 271 76.4
MSTRG.12666 Avicennia marina HOM05D004868 ORTHO05D006030 4.8e-119 431.8 274 76.3
COL.COLO4_13636 Corchorus olitorius HOM05D004868 ORTHO05D006030 8.2e-119 431.0 264 79.2
BcaNung04261 Brassica carinata HOM05D004868 ORTHO05D006030 1.4e-118 430.3 271 75.3
Aa31LG11G8840 Aethionema arabicum HOM05D004868 ORTHO05D006030 1.8e-118 429.9 271 76.0
CARHR185710 Cardamine hirsuta HOM05D004868 ORTHO05D006030 7.0e-118 427.9 271 74.9
MELO3C010076.2 Cucumis melo HOM05D004868 ORTHO05D006030 1.2e-117 427.2 259 78.0
Carub.0006s2543 Capsella rubella HOM05D004868 ORTHO05D006030 3.5e-117 425.6 268 75.7
CsaV3_1G044760 Cucumis sativus L. HOM05D004868 ORTHO05D006030 1.3e-116 423.7 259 77.2
VMungo0331G1201 Vigna mungo HOM05D004868 ORTHO05D006030 1.3e-116 423.7 268 76.5
ClCG03G010920 Citrullus lanatus HOM05D004868 ORTHO05D006030 5.0e-116 421.8 259 76.8
AUR62000953 Chenopodium quinoa HOM05D004868 ORTHO05D006030 6.5e-116 421.4 230 86.1
Sed0017257 Sechium edule HOM05D004868 ORTHO05D006030 6.5e-116 421.4 262 77.1
ATR0618G246 Amborella trichopoda HOM05D004868 ORTHO05D006030 1.2e-114 417.2 260 76.9
Psat7g231080 Pisum sativum HOM05D004868 ORTHO05D006030 1.4e-113 413.7 217 85.7
Nn4g26018 Nelumbo nucifera HOM05D004868 ORTHO05D006030 1.8e-113 413.3 221 85.5
Zm00001eb110980 Zea mays HOM05D004868 ORTHO05D006030 1.8e-113 413.3 277 70.8
Os07g0667400 Oryza sativa ssp. japonica HOM05D004868 ORTHO05D006030 3.0e-113 412.5 275 70.9
Sabra13G0033200 Salix brachista HOM05D004868 ORTHO05D006030 8.8e-113 411.0 234 84.2
unitig_8.g3689 Utricularia gibba HOM05D004868 ORTHO05D006030 1.7e-111 406.8 274 69.3
Cpa.g.sc117.39 Carica papaya HOM05D004868 ORTHO05D006030 2.2e-111 406.4 214 86.9
vmacro05392 Vaccinium macrocarpon HOM05D004868 ORTHO05D006030 3.7e-111 405.6 220 85.9
Dinv02605 Davidia involucrata HOM05D004868 ORTHO05D006030 1.4e-110 403.7 221 85.1
Lj7C479T1 Lonicera japonica HOM05D004868 ORTHO05D006030 2.4e-110 402.9 217 84.3
HPP92_016882 Vanilla planifolia HOM05D004868 ORTHO05D006030 3.6e-106 389.0 269 68.4
SEGI_16580 Sequoiadendron giganteum HOM05D004868 ORTHO05D006030 8.0e-106 387.9 278 69.1
HPP92_011336 Vanilla planifolia HOM05D004868 ORTHO05D006030 1.2e-104 384.0 266 67.7
Dinv02602 Davidia involucrata HOM05D004868 ORTHO05D006030 4.4e-104 382.1 208 85.6
SMO203G0024 Selaginella moellendorffii HOM05D004868 ORTHO05D006030 3.5e-101 372.5 272 64.3
SHI18309 Sapria himalayana HOM05D004868 ORTHO05D006030 3.8e-100 369.0 218 76.1
Oeu027042.1 Olea europaea HOM05D004868 ORTHO05D006030 5.2e-89 332.0 232 72.4
AagrBONN_evm.TU.Sc2ySwM_344.3690 Anthoceros agrestis HOM05D004868 ORTHO05D006030 6.8e-89 331.6 273 60.8
Pp3c9_1110 Physcomitrium patens HOM05D004868 ORTHO05D006030 1.8e-81 307.0 233 63.1
Dinv17742 Davidia involucrata HOM05D004868 ORTHO05D006030 7.0e-78 295.0 162 84.6
Cpa.g.c47757 Carica papaya HOM05D004868 ORTHO05D006030 8.6e-76 288.1 152 87.5
TAR365G1069 Trochodendron aralioides HOM05D004868 ORTHO05D006030 5.2e-73 278.9 168 81.5
CDE08G0242 Ceratophyllum demersum HOM05D004868 ORTHO05D006030 3.7e-71 272.7 187 71.1
BcaC05g29994 Brassica carinata HOM05D004868 ORTHO05D006030 2.4e-70 270.0 218 63.3
CARHR079420 Cardamine hirsuta HOM05D004868 ORTHO05D006030 1.9e-59 233.8 148 76.4
Nn3g21303 Nelumbo nucifera HOM05D004868 ORTHO05D006030 3.3e-59 233.0 152 74.3
A06p37760 Brassica napus HOM05D004868 ORTHO05D006030 1.4e-57 227.6 149 73.8
Sc09g0003690 Simmondsia chinensis HOM05D004868 ORTHO05D006030 4.0e-57 226.1 153 71.9
CDE02G4194 Ceratophyllum demersum HOM05D001090 ORTHO05D002687 2.2e-55 220.3 126 80.2
HPP92_028573 Vanilla planifolia HOM05D004868 ORTHO05D006030 6.6e-52 208.8 147 66.7
BcaB04g19280 Brassica carinata HOM05D004868 ORTHO05D006030 4.5e-32 142.9 145 55.2
BolC1t05715H Brassica oleracea HOM05D004868 ORTHO05D006030 1.1e-14 85.1 49 75.5
Lsat_1_v5_gn_5_121600 Lactuca sativa HOM05D004868 ORTHO05D027635 3.3e-11 73.6 92 47.8


User provided reference genes

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