Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G00598 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 2.9e-60 235.0 111 100.0
Nn3g21235 Nelumbo nucifera HOM05D004069 ORTHO05D004699 1.2e-47 193.0 107 81.3
Nn4g26079 Nelumbo nucifera HOM05D004069 ORTHO05D004699 4.7e-47 191.0 107 80.4
TAR362G0867 Trochodendron aralioides HOM05D004069 ORTHO05D004699 8.1e-47 190.3 107 82.2
Actinidia32378 Actinidia chinensis HOM05D004069 ORTHO05D004699 1.3e-44 183.0 109 77.1
PSO832G3814 Papaver somniferum HOM05D004069 ORTHO05D004699 6.4e-44 180.6 104 78.8
DCAR_002434 Daucus carota HOM05D004069 ORTHO05D004699 8.4e-44 180.3 103 77.7
PSO210G4490 Papaver somniferum HOM05D004069 ORTHO05D004699 1.1e-43 179.9 104 77.9
Actinidia00062 Actinidia chinensis HOM05D004069 ORTHO05D004699 4.2e-43 177.9 108 75.9
Sc11g0003950 Simmondsia chinensis HOM05D004069 ORTHO05D004699 7.1e-43 177.2 104 76.0
ATR0208G034 Amborella trichopoda HOM05D004069 ORTHO05D004699 9.3e-43 176.8 111 75.7
Sed0000717 Sechium edule HOM05D004069 ORTHO05D004699 9.3e-43 176.8 107 77.6
Aqoxy2G03156 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 1.2e-42 176.4 103 75.7
HanXRQChr13g0410171 Helianthus annuus HOM05D004069 ORTHO05D004699 1.2e-42 176.4 103 74.8
Os03g0295500 Oryza sativa ssp. japonica HOM05D004069 ORTHO05D004699 1.6e-42 176.0 111 73.0
vmacro08226 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 1.6e-42 176.0 104 76.0
HanXRQChr03g0079731 Helianthus annuus HOM05D004069 ORTHO05D004699 2.7e-42 175.3 103 76.7
GSVIVG01017834001 Vitis vinifera HOM05D004069 ORTHO05D004699 2.7e-42 175.3 103 76.7
Hma1.2p1_1671F.1_g296710 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 3.5e-42 174.9 102 76.5
Eucgr.H03663 Eucalyptus grandis HOM05D004069 ORTHO05D004699 4.6e-42 174.5 100 79.0
Hma1.2p1_0078F.1_g040910 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 6.0e-42 174.1 102 76.5
Cc03_g02560 Coffea canephora HOM05D004069 ORTHO05D004699 7.8e-42 173.7 100 78.0
CsaV3_1G037430 Cucumis sativus L. HOM05D004069 ORTHO05D004699 7.8e-42 173.7 107 76.6
Nitab4.5_0001714g0140 Nicotiana tabacum HOM05D004069 ORTHO05D004699 7.8e-42 173.7 104 75.0
Nitab4.5_0009882g0010 Nicotiana tabacum HOM05D004069 ORTHO05D004699 7.8e-42 173.7 104 75.0
Zm00001eb396890 Zea mays HOM05D004069 ORTHO05D004699 1.0e-41 173.3 111 73.0
CSS0012120 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 1.7e-41 172.6 104 74.0
Manes.15G019000 Manihot esculenta HOM05D004069 ORTHO05D004699 1.7e-41 172.6 107 74.8
Sed0022789 Sechium edule HOM05D004069 ORTHO05D004699 2.3e-41 172.2 107 74.8
TWI09G1514 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 2.3e-41 172.2 103 74.8
Psat4g149640 Pisum sativum HOM05D004069 ORTHO05D004699 3.9e-41 171.4 106 73.6
PGSC0003DMG400022739 Solanum tuberosum HOM05D004069 ORTHO05D004699 3.9e-41 171.4 105 72.4
Actinidia23443 Actinidia chinensis HOM05D004069 ORTHO05D004699 5.1e-41 171.0 104 74.0
TWI73G0788 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 5.1e-41 171.0 103 74.8
vmacro15276 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 5.1e-41 171.0 107 74.8
Sabra10G0013600 Salix brachista HOM05D004069 ORTHO05D004699 6.6e-41 170.6 104 75.0
Sc19g0004820 Simmondsia chinensis HOM05D004069 ORTHO05D004699 6.6e-41 170.6 107 73.8
CANSAT54G0205 Cannabis sativa HOM05D004069 ORTHO05D004699 8.7e-41 170.2 103 74.8
TPR.G36608 Trifolium pratense HOM05D004069 ORTHO05D004699 1.1e-40 169.9 106 73.6
Potri.008G196600 Populus trichocarpa HOM05D004069 ORTHO05D004699 1.5e-40 169.5 104 74.0
Solyc08g080240.3 Solanum lycopersicum HOM05D004069 ORTHO05D004699 1.5e-40 169.5 104 72.1
Sopen08g028590 Solanum pennellii HOM05D004069 ORTHO05D004699 1.5e-40 169.5 104 72.1
Cfa015517 Carpinus fangiana HOM05D004069 ORTHO05D004699 1.9e-40 169.1 103 73.8
ECA240G0933 Erigeron canadensis HOM05D004069 ORTHO05D004699 1.9e-40 169.1 100 74.0
CiPaw.01G155300 Carya illinoinensis HOM05D004069 ORTHO05D004699 2.5e-40 168.7 107 72.9
CDE09G1375 Ceratophyllum demersum HOM05D004069 ORTHO05D004699 2.5e-40 168.7 104 73.1
AUR62022250 Chenopodium quinoa HOM05D004069 ORTHO05D004699 2.5e-40 168.7 98 75.5
Potri.010G026000 Populus trichocarpa HOM05D004069 ORTHO05D004699 2.5e-40 168.7 104 74.0
Prupe.1G144300 Prunus persica HOM05D004069 ORTHO05D004699 2.5e-40 168.7 107 73.8
Cpa.g.sc16.88 Carica papaya HOM05D004069 ORTHO05D004699 3.3e-40 168.3 107 73.8
Lsat_1_v5_gn_5_49720 Lactuca sativa HOM05D004069 ORTHO05D004699 3.3e-40 168.3 100 73.0
Manes.03G189600 Manihot esculenta HOM05D004069 ORTHO05D004699 3.3e-40 168.3 107 73.8
PGR031G1560 Punica granatum HOM05D004069 ORTHO05D004699 3.3e-40 168.3 103 73.8
QL06p006731 Quercus lobata HOM05D004069 ORTHO05D004699 3.3e-40 168.3 105 72.4
Sabra08G0163600 Salix brachista HOM05D004069 ORTHO05D004699 3.3e-40 168.3 104 73.1
EL10Ac9g21174 Beta vulgaris HOM05D004069 ORTHO05D004699 4.3e-40 167.9 95 77.9
Peaxi162Scf00620g00918 Petunia axillaris HOM05D004069 ORTHO05D004699 4.3e-40 167.9 104 72.1
Hund24899 Selenicereus undatus HOM05D004069 ORTHO05D004699 5.6e-40 167.5 107 73.8
Rhsim02G0014600 Rhododendron simsii HOM05D004069 ORTHO05D004699 7.3e-40 167.2 104 73.1
Ah.01g005950 Amaranthus hybridus HOM05D004069 ORTHO05D004699 9.6e-40 166.8 98 75.5
CAN.G981.42 Capsicum annuum HOM05D004069 ORTHO05D004699 9.6e-40 166.8 101 72.3
Glyma.01G145000 Glycine max HOM05D004069 ORTHO05D004699 9.6e-40 166.8 106 74.5
Medtr8g035900 Medicago truncatula HOM05D004069 ORTHO05D004699 9.6e-40 166.8 102 73.5
Actinidia40204 Actinidia chinensis HOM05D004069 ORTHO05D004699 1.3e-39 166.4 104 72.1
MD10G1048000 Malus domestica HOM05D004069 ORTHO05D004699 1.3e-39 166.4 107 72.0
THA.LOC104818836 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 1.3e-39 166.4 107 72.9
Zm00001eb013640 Zea mays HOM05D004069 ORTHO05D004699 1.3e-39 166.4 117 69.2
Atru.chr4.2722 Acer truncatum HOM05D004069 ORTHO05D004699 1.6e-39 166.0 107 72.0
Eucgr.B01248 Eucalyptus grandis HOM05D004069 ORTHO05D004699 1.6e-39 166.0 106 71.7
Lj3g0025312 Lotus japonicus HOM05D004069 ORTHO05D004699 1.6e-39 166.0 106 73.6
Oeu007709.1 Olea europaea HOM05D004069 ORTHO05D004699 1.6e-39 166.0 104 68.3
RcHm_v2.0_Chr4g0420511 Rosa chinensis HOM05D004069 ORTHO05D004699 2.1e-39 165.6 107 72.0
VMungo0331G0279 Vigna mungo HOM05D004069 ORTHO05D004699 2.1e-39 165.6 106 74.5
arahy.Tifrunner.gnm1.ann1.J8E67M Arachis hypogaea HOM05D004069 ORTHO05D004699 2.8e-39 165.2 106 72.6
CiPaw.02G087900 Carya illinoinensis HOM05D004069 ORTHO05D004699 2.8e-39 165.2 107 72.0
FAN07G2596 Fragaria x ananassa HOM05D004069 ORTHO05D004699 2.8e-39 165.2 107 71.0
FAN22G1255 Fragaria x ananassa HOM05D004069 ORTHO05D004699 2.8e-39 165.2 107 71.0
Carub.0003s0574 Capsella rubella HOM05D004069 ORTHO05D004699 3.6e-39 164.9 106 70.8
TAR633G1540 Trochodendron aralioides HOM05D004069 ORTHO05D004699 3.6e-39 164.9 90 82.2
AL6G30150 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 4.8e-39 164.5 105 71.4
AT5G18800 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 4.8e-39 164.5 105 71.4
arahy.Tifrunner.gnm1.ann1.EYX6XU Arachis hypogaea HOM05D004069 ORTHO05D004699 4.8e-39 164.5 106 72.6
BcaB01g05275 Brassica carinata HOM05D004069 ORTHO05D004699 4.8e-39 164.5 105 71.4
BcaC03g13618 Brassica carinata HOM05D004069 ORTHO05D004699 4.8e-39 164.5 105 71.4
A03p09140 Brassica napus HOM05D004069 ORTHO05D004699 4.8e-39 164.5 105 71.4
A10p20810 Brassica napus HOM05D004069 ORTHO05D004699 4.8e-39 164.5 105 71.4
C03p10670 Brassica napus HOM05D004069 ORTHO05D004699 4.8e-39 164.5 105 71.4
BolC2t06916H Brassica oleracea HOM05D004069 ORTHO05D004699 4.8e-39 164.5 105 71.4
BolC3t13543H Brassica oleracea HOM05D004069 ORTHO05D004699 4.8e-39 164.5 105 71.4
BraA03t10237Z Brassica rapa HOM05D004069 ORTHO05D004699 4.8e-39 164.5 105 71.4
BraA10t44146Z Brassica rapa HOM05D004069 ORTHO05D004699 4.8e-39 164.5 105 71.4
Carub.0006s1710 Capsella rubella HOM05D004069 ORTHO05D004699 4.8e-39 164.5 105 71.4
Glyma.03G021800 Glycine max HOM05D004069 ORTHO05D004699 4.8e-39 164.5 106 73.6
FvH4_4g16930 Fragaria vesca HOM05D004069 ORTHO05D004699 6.2e-39 164.1 107 70.1
FAN12G1790 Fragaria x ananassa HOM05D004069 ORTHO05D004699 6.2e-39 164.1 107 70.1
FAN12G4073 Fragaria x ananassa HOM05D004069 ORTHO05D004699 6.2e-39 164.1 107 70.1
FAN17G0096 Fragaria x ananassa HOM05D004069 ORTHO05D004699 6.2e-39 164.1 107 71.0
MD05G1041600 Malus domestica HOM05D004069 ORTHO05D004699 6.2e-39 164.1 107 72.0
Eucgr.B01240 Eucalyptus grandis HOM05D004069 ORTHO05D004699 8.1e-39 163.7 106 70.8
MD13G1175600 Malus domestica HOM05D004069 ORTHO05D004699 8.1e-39 163.7 107 71.0
PGR031G3162 Punica granatum HOM05D004069 ORTHO05D004699 8.1e-39 163.7 103 71.8
AT3G06310 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 1.1e-38 163.3 106 69.8
BcaB01g04889 Brassica carinata HOM05D004069 ORTHO05D004699 1.1e-38 163.3 103 71.8
C09p57690 Brassica napus HOM05D004069 ORTHO05D004699 1.1e-38 163.3 105 70.5
PGR004G0388 Punica granatum HOM05D004069 ORTHO05D004699 1.1e-38 163.3 100 74.0
AL3G17240 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 1.4e-38 162.9 106 69.8
BcaB08g36643 Brassica carinata HOM05D004069 ORTHO05D004699 1.4e-38 162.9 105 70.5
CARHR194200 Cardamine hirsuta HOM05D004069 ORTHO05D004699 1.4e-38 162.9 105 70.5
Thhalv10015085m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 1.4e-38 162.9 105 70.5
Sp6g25590 Schrenkiella parvula HOM05D004069 ORTHO05D004699 1.4e-38 162.9 105 70.5
BcaC04g18646 Brassica carinata HOM05D004069 ORTHO05D004699 1.8e-38 162.5 105 70.5
BolC9t58640H Brassica oleracea HOM05D004069 ORTHO05D004699 1.8e-38 162.5 105 70.5
BraA02t05469Z Brassica rapa HOM05D004069 ORTHO05D004699 1.8e-38 162.5 105 70.5
Thhalv10021810m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 1.8e-38 162.5 106 69.8
Sp3g05220 Schrenkiella parvula HOM05D004069 ORTHO05D004699 1.8e-38 162.5 106 68.9
HPP92_001127 Vanilla planifolia HOM05D004069 ORTHO05D004699 1.8e-38 162.5 108 69.4
CARHR080830 Cardamine hirsuta HOM05D004069 ORTHO05D004699 2.4e-38 162.2 107 68.2
unitig_37.g12295 Utricularia gibba HOM05D004069 ORTHO05D004699 2.4e-38 162.2 104 68.3
Hund07638 Selenicereus undatus HOM05D004069 ORTHO05D004699 3.1e-38 161.8 100 72.0
VMungo0331G0995 Vigna mungo HOM05D004069 ORTHO05D004699 9.0e-38 160.2 106 71.7
unitig_46.g18583 Utricularia gibba HOM05D004069 ORTHO05D004699 1.2e-37 159.8 100 71.0
MSTRG.9205 Avicennia marina HOM05D004069 ORTHO05D004699 2.0e-37 159.1 96 72.9
Ciclev10006197m.g Citrus clementina HOM05D004069 ORTHO05D004699 2.0e-37 159.1 103 68.0
Hma1.2p1_0643F.1_g194630 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 2.0e-37 159.1 94 76.6
Lalb_Chr07g0189611 Lupinus albus HOM05D004069 ORTHO05D004699 2.0e-37 159.1 105 65.7
Aa31LG11G10890 Aethionema arabicum HOM05D004069 ORTHO05D004699 2.6e-37 158.7 105 67.6
SEGI_25177 Sequoiadendron giganteum HOM05D004069 ORTHO05D004699 2.6e-37 158.7 108 65.7
MD16G1177400 Malus domestica HOM05D004069 ORTHO05D004699 3.4e-37 158.3 107 69.2
Migut.F02022 Erythranthe guttata HOM05D004069 ORTHO05D004699 5.8e-37 157.5 96 68.8
Lalb_Chr13g0291661 Lupinus albus HOM05D004069 ORTHO05D004699 7.6e-37 157.1 109 67.0
Phvul.010G048500 Phaseolus vulgaris HOM05D004069 ORTHO05D004699 7.6e-37 157.1 106 69.8
Gorai.011G184000 Gossypium raimondii HOM05D004069 ORTHO05D004699 1.3e-36 156.4 107 66.4
THA.LOC104827125 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 1.7e-36 156.0 107 69.2
Gohir.D10G164800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 2.2e-36 155.6 101 69.3
A02p05100 Brassica napus HOM05D000415 ORTHO05D002707 2.9e-36 155.2 100 71.0
C02p10150 Brassica napus HOM05D000415 ORTHO05D002707 2.9e-36 155.2 100 71.0
Thecc.04G274500 Theobroma cacao HOM05D004069 ORTHO05D004699 3.8e-36 154.8 105 65.7
Duzib212G0467 Durio zibethinus HOM05D004069 ORTHO05D004699 1.4e-35 152.9 103 65.0
Gohir.A09G232800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 1.4e-35 152.9 103 66.0
Gohir.A10G103600 Gossypium hirsutum HOM05D004069 ORTHO05D004699 1.9e-35 152.5 101 68.3
Gohir.D09G233900 Gossypium hirsutum HOM05D004069 ORTHO05D004699 2.4e-35 152.1 101 67.3
Gorai.006G256800 Gossypium raimondii HOM05D004069 ORTHO05D004699 3.2e-35 151.8 101 66.3
HanXRQChr03g0080011 Helianthus annuus HOM05D004069 ORTHO05D004699 4.2e-35 151.4 86 74.4
Duzib151G0641 Durio zibethinus HOM05D004069 ORTHO05D004699 9.3e-35 150.2 103 64.1
Rhsim04G0214300 Rhododendron simsii HOM05D004069 ORTHO05D004699 1.6e-34 149.4 168 47.6
Duzib052G0156 Durio zibethinus HOM05D004069 ORTHO05D004699 2.3e-33 145.6 103 62.1
Pp3c3_33480 Physcomitrium patens HOM05D004069 ORTHO05D004699 4.5e-29 131.3 94 62.8
Dinv44442 Davidia involucrata HOM05D004069 ORTHO05D004699 5.8e-29 131.0 71 77.5
Pp3c10_17050 Physcomitrium patens HOM05D004069 ORTHO05D004699 5.8e-29 131.0 104 58.7
Lsat_1_v5_gn_5_51221 Lactuca sativa HOM05D004069 ORTHO05D004699 2.2e-28 129.0 72 75.0
Pp3c4_6220 Physcomitrium patens HOM05D004069 ORTHO05D004699 2.2e-28 129.0 98 59.2
CDE02G1037 Ceratophyllum demersum HOM05D003181 ORTHO05D003689 8.4e-28 127.1 78 71.8
Mapoly0119s0025 Marchantia polymorpha HOM05D004069 ORTHO05D004699 1.4e-27 126.3 94 57.4
Haze_01035 Corylus avellana HOM05D004069 ORTHO05D004699 3.2e-27 125.2 85 70.6
CBR_g31386 Chara braunii HOM05D004069 ORTHO05D004699 1.6e-26 122.9 99 56.6
Dinv38340 Davidia involucrata HOM05D004069 ORTHO05D004699 3.0e-25 118.6 108 53.7
THA.LOC104802732 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 1.5e-24 116.3 79 64.6
SMO146G0136 Selaginella moellendorffii HOM05D004069 ORTHO05D004699 4.8e-23 111.3 97 46.4
CSS0016731 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 5.3e-22 107.8 72 70.8
PGSC0003DMG400012496 Solanum tuberosum HOM05D004069 ORTHO05D004699 4.5e-21 104.8 71 66.2
ClCG03G006350 Citrullus lanatus HOM05D004069 ORTHO05D004699 2.9e-20 102.1 70 71.4
Oeu055049.1 Olea europaea HOM05D005940 ORTHO05D007027 1.1e-19 100.1 68 67.6
MCO10G196 Micromonas commoda HOM05D004069 ORTHO05D004699 4.2e-19 98.2 91 48.4
HanXRQChr05g0152631 Helianthus annuus HOM05D001685 ORTHO05D007488 1.2e-18 96.7 76 64.5
MELO3C035505.2 Cucumis melo HOM05D004069 ORTHO05D004699 1.6e-18 96.3 66 72.7
AUR62031965 Chenopodium quinoa HOM05D004069 ORTHO05D004699 7.9e-18 94.0 57 75.4
MBI18_g15803_MAGBIO Magnolia biondii HOM05D004069 ORTHO05D004699 1.8e-17 92.8 45 86.7
Ca_23836_v3 Cicer arietinum L. HOM05D004069 ORTHO05D004699 5.1e-17 91.3 66 69.7
CANSAT54G1967 Cannabis sativa HOM05D004069 ORTHO05D004699 3.3e-16 88.6 59 71.2
Solyc08g007805.1 Solanum lycopersicum HOM05D004069 ORTHO05D004699 7.4e-16 87.4 54 70.4
PRCOL_00002240 Prasinoderma coloniale HOM05D004069 ORTHO05D004699 1.1e-14 83.6 90 38.9
Lsat_1_v5_gn_5_162901 Lactuca sativa HOM05D004069 ORTHO05D004699 2.4e-14 82.4 59 62.7
Ah.01g017180 Amaranthus hybridus HOM05D004069 ORTHO05D004699 9.0e-14 80.5 52 61.5
Ah.01g017190 Amaranthus hybridus HOM05D004069 ORTHO05D004699 1.2e-13 80.1 53 69.8
SGA_v2.0_scaffold122G33247 Striga asiatica HOM05D002362 ORTHO05D002465 3.4e-13 78.6 50 70.0
VMungo0720G1128 Vigna mungo HOM05D004069 ORTHO05D004699 6.5e-12 74.3 64 56.2
VMungo0251G3681 Vigna mungo HOM05D039118 ORTHO05D004699 4.6e-10 68.2 45 64.4


User provided reference genes

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