Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G00552 Aquilegia oxysepala HOM05D006675 ORTHO05D008302 1.6e-100 369.4 180 100.0
QL12p001835 Quercus lobata HOM05D006675 ORTHO05D008302 8.7e-91 337.0 179 87.2
GSVIVG01013027001 Vitis vinifera HOM05D006675 ORTHO05D008302 1.9e-90 335.9 180 88.9
Ciclev10002637m.g Citrus clementina HOM05D006675 ORTHO05D008302 5.6e-90 334.3 180 88.9
Duzib205G0370 Durio zibethinus HOM05D006675 ORTHO05D008302 9.6e-90 333.6 180 87.2
Thecc.03G311400 Theobroma cacao HOM05D006675 ORTHO05D008302 2.1e-89 332.4 180 87.2
CiPaw.12G069400 Carya illinoinensis HOM05D006675 ORTHO05D008302 2.8e-89 332.0 180 86.1
COL.COLO4_16920 Corchorus olitorius HOM05D006675 ORTHO05D008302 6.2e-89 330.9 180 87.2
Nn1g09734 Nelumbo nucifera HOM05D006675 ORTHO05D008302 6.2e-89 330.9 180 87.2
CSS0012354 Camellia sinensis var. sinensis HOM05D006675 ORTHO05D008302 2.4e-88 328.9 180 88.3
CSS0042811 Camellia sinensis var. sinensis HOM05D006675 ORTHO05D008302 2.4e-88 328.9 180 88.3
Manes.01G194600 Manihot esculenta HOM05D006675 ORTHO05D008302 5.3e-88 327.8 180 86.1
TWI60G1033 Tripterygium wilfordii HOM05D006675 ORTHO05D008302 5.3e-88 327.8 180 84.4
MELO3C013816.2 Cucumis melo HOM05D006675 ORTHO05D008302 6.9e-88 327.4 180 85.0
Potri.001G135700 Populus trichocarpa HOM05D006675 ORTHO05D008302 6.9e-88 327.4 180 85.0
Sed0011153 Sechium edule HOM05D006675 ORTHO05D008302 6.9e-88 327.4 180 85.6
PSO170G4469 Papaver somniferum HOM05D006675 ORTHO05D008302 9.0e-88 327.0 180 87.2
HPP92_023365 Vanilla planifolia HOM05D006675 ORTHO05D008302 9.0e-88 327.0 180 85.0
Cfa009033 Carpinus fangiana HOM05D006675 ORTHO05D008302 1.2e-87 326.6 180 84.4
CsaV3_3G001280 Cucumis sativus L. HOM05D006675 ORTHO05D008302 1.2e-87 326.6 180 84.4
Atru.chr3.2397 Acer truncatum HOM05D006675 ORTHO05D008302 3.4e-87 325.1 180 86.7
Haze_12062 Corylus avellana HOM05D006675 ORTHO05D008302 3.4e-87 325.1 180 84.4
RcHm_v2.0_Chr7g0212211 Rosa chinensis HOM05D006675 ORTHO05D008302 4.5e-87 324.7 180 84.4
Lj2g0021996 Lotus japonicus HOM05D006675 ORTHO05D008302 7.6e-87 323.9 180 83.3
CAN.G773.29 Capsicum annuum HOM05D006675 ORTHO05D008302 1.3e-86 323.2 180 83.3
MSTRG.1795 Avicennia marina HOM05D006675 ORTHO05D008302 1.7e-86 322.8 180 81.7
Gohir.A03G000027 Gossypium hirsutum HOM05D006675 ORTHO05D008302 1.7e-86 322.8 180 84.4
CANSAT21G2314 Cannabis sativa HOM05D006675 ORTHO05D008302 2.2e-86 322.4 180 83.9
Sc10g0009260 Simmondsia chinensis HOM05D006675 ORTHO05D008302 2.2e-86 322.4 180 83.3
Duzib068G1343 Durio zibethinus HOM05D006675 ORTHO05D008302 2.9e-86 322.0 180 84.4
Gohir.D03G176700 Gossypium hirsutum HOM05D006675 ORTHO05D008302 2.9e-86 322.0 180 84.4
PGR042G1238 Punica granatum HOM05D006675 ORTHO05D008302 2.9e-86 322.0 180 84.4
Solyc08g076130.3 Solanum lycopersicum HOM05D006675 ORTHO05D008302 4.9e-86 321.2 180 82.8
Sopen08g024770 Solanum pennellii HOM05D006675 ORTHO05D008302 4.9e-86 321.2 180 82.8
VMungo1215G1847 Vigna mungo HOM05D006675 ORTHO05D008302 4.9e-86 321.2 180 83.3
PGSC0003DMG400003501 Solanum tuberosum HOM05D006675 ORTHO05D008302 8.4e-86 320.5 180 82.2
Migut.E01322 Erythranthe guttata HOM05D006675 ORTHO05D008302 1.1e-85 320.1 180 82.2
PSO017G0801 Papaver somniferum HOM05D006675 ORTHO05D008302 1.4e-85 319.7 180 86.7
PGSC0003DMG400009297 Solanum tuberosum HOM05D006675 ORTHO05D008302 2.4e-85 318.9 180 82.2
DCAR_024956 Daucus carota HOM05D006675 ORTHO05D008302 3.2e-85 318.5 180 82.2
Lalb_Chr16g0380971 Lupinus albus HOM05D006675 ORTHO05D008302 5.5e-85 317.8 180 81.7
Phvul.002G134300 Phaseolus vulgaris HOM05D006675 ORTHO05D008302 7.1e-85 317.4 180 82.2
BcaNung04023 Brassica carinata HOM05D006675 ORTHO05D008302 9.3e-85 317.0 180 81.7
THA.LOC104806177 Tarenaya hassleriana HOM05D006675 ORTHO05D008302 9.3e-85 317.0 180 81.7
ATR0796G253 Amborella trichopoda HOM05D006675 ORTHO05D008302 1.2e-84 316.6 180 82.8
AT4G19003 Arabidopsis thaliana HOM05D006675 ORTHO05D008302 1.2e-84 316.6 180 81.7
FvH4_5g23270 Fragaria vesca HOM05D006675 ORTHO05D008302 1.2e-84 316.6 180 82.2
FAN18G0120 Fragaria x ananassa HOM05D006675 ORTHO05D008302 1.2e-84 316.6 180 82.2
FAN18G2874 Fragaria x ananassa HOM05D006675 ORTHO05D008302 1.2e-84 316.6 180 82.2
Thhalv10026368m.g Eutrema salsugineum HOM05D006675 ORTHO05D008302 2.1e-84 315.8 180 81.1
Medtr5g028000 Medicago truncatula HOM05D006675 ORTHO05D008302 2.7e-84 315.5 180 81.7
BcaC09g51446 Brassica carinata HOM05D000169 ORTHO05D008302 3.5e-84 315.1 180 80.6
BolC1t01279H Brassica oleracea HOM05D000169 ORTHO05D000542 3.5e-84 315.1 180 80.6
Cc08_g03740 Coffea canephora HOM05D006675 ORTHO05D008302 4.6e-84 314.7 180 81.7
C01p13040 Brassica napus HOM05D000169 ORTHO05D000542 6.0e-84 314.3 180 80.6
BraA01t01049Z Brassica rapa HOM05D006675 ORTHO05D008302 6.0e-84 314.3 180 80.6
Sp7g17730 Schrenkiella parvula HOM05D006675 ORTHO05D008302 7.9e-84 313.9 180 80.6
AL7G35150 Arabidopsis lyrata HOM05D006675 ORTHO05D008302 1.0e-83 313.5 180 81.1
SalBow8G0964 Salvia bowleyana HOM05D006675 ORTHO05D008302 1.0e-83 313.5 180 78.9
THA.LOC104798450 Tarenaya hassleriana HOM05D006675 ORTHO05D008302 1.0e-83 313.5 180 81.7
Carub.0007s2216 Capsella rubella HOM05D006675 ORTHO05D008302 1.8e-83 312.8 180 80.6
CARHR225840 Cardamine hirsuta HOM05D006675 ORTHO05D008302 3.0e-83 312.0 180 80.0
Glyma.09G209600 Glycine max HOM05D006675 ORTHO05D008302 3.9e-83 311.6 180 81.1
Lj8A133G65 Lonicera japonica HOM05D006675 ORTHO05D008302 1.5e-82 309.7 199 75.4
MD11G1243800 Malus domestica HOM05D006675 ORTHO05D008302 4.3e-82 308.1 181 79.6
Glyma.01G011400 Glycine max HOM05D006675 ORTHO05D008302 7.4e-82 307.4 180 78.3
Prupe.4G182100 Prunus persica HOM05D006675 ORTHO05D008302 1.3e-81 306.6 181 79.6
HanXRQChr12g0362191 Helianthus annuus HOM05D006675 ORTHO05D008302 2.1e-81 305.8 180 78.9
Actinidia01330 Actinidia chinensis HOM05D006675 ORTHO05D008302 8.1e-81 303.9 165 86.7
Aa31LG6G1700 Aethionema arabicum HOM05D006675 ORTHO05D008302 1.1e-80 303.5 181 78.5
ECA233G1922 Erigeron canadensis HOM05D006675 ORTHO05D008302 2.4e-80 302.4 180 77.2
Zm00001eb157890 Zea mays HOM05D006675 ORTHO05D008302 1.2e-79 300.1 180 81.7
Rhsim06G0208000 Rhododendron simsii HOM05D006675 ORTHO05D008302 2.0e-79 299.3 206 72.8
HanXRQChr14g0430781 Helianthus annuus HOM05D006675 ORTHO05D008302 1.0e-78 297.0 187 75.4
Oeu017091.1 Olea europaea HOM05D006675 ORTHO05D008302 2.9e-78 295.4 160 86.2
BcaNung06620 Brassica carinata HOM05D006675 ORTHO05D008302 3.2e-77 292.0 203 68.5
CDE02G0997 Ceratophyllum demersum HOM05D006675 ORTHO05D008302 1.2e-76 290.0 180 78.9
Dinv06918 Davidia involucrata HOM05D006675 ORTHO05D008302 1.0e-75 287.0 159 86.8
SEGI_13659 Sequoiadendron giganteum HOM05D006675 ORTHO05D008302 1.3e-75 286.6 177 74.6
SGA_v2.0_scaffold8G04421 Striga asiatica HOM05D006675 ORTHO05D008302 6.7e-75 284.3 161 80.7
Peaxi162Scf00052g00336 Petunia axillaris HOM05D006675 ORTHO05D008302 1.1e-74 283.5 159 83.0
AUR62007364 Chenopodium quinoa HOM05D006675 ORTHO05D008302 3.3e-74 282.0 160 82.5
Eucgr.E01319 Eucalyptus grandis HOM05D006675 ORTHO05D008302 1.3e-73 280.0 174 75.9
unitig_61.g26418 Utricularia gibba HOM05D006675 ORTHO05D008302 6.3e-73 277.7 162 79.6
Eucgr.E01313 Eucalyptus grandis HOM05D006675 ORTHO05D008302 2.4e-72 275.8 175 74.3
Mapoly0004s0185 Marchantia polymorpha HOM05D006675 ORTHO05D008302 6.9e-72 274.2 177 70.6
Lsat_1_v5_gn_9_15400 Lactuca sativa HOM05D006675 ORTHO05D008302 2.6e-71 272.3 156 81.4
Nitab4.5_0002897g0050 Nicotiana tabacum HOM05D006675 ORTHO05D008302 5.9e-71 271.2 180 72.8
Ca_25161_v3 Cicer arietinum L. HOM05D006675 ORTHO05D000003 2.9e-70 268.9 160 77.5
ClCG06G010630 Citrullus lanatus HOM05D006675 ORTHO05D008302 5.5e-69 264.6 172 75.6
Thhalv10015765m.g Eutrema salsugineum HOM05D006675 ORTHO05D008302 7.2e-69 264.2 167 74.3
SMO364G0912 Selaginella moellendorffii HOM05D006675 ORTHO05D008302 2.7e-68 262.3 175 68.6
EL10Ac5g11997 Beta vulgaris HOM05D006675 ORTHO05D008302 7.9e-68 260.8 164 75.0
Pp3c15_1420 Physcomitrium patens HOM05D006675 ORTHO05D008302 5.7e-66 254.6 175 65.1
Dinv29017 Davidia involucrata HOM05D006675 ORTHO05D008302 1.3e-65 253.4 153 78.4
Gorai.003G186000 Gossypium raimondii HOM05D006675 ORTHO05D008302 1.6e-65 253.1 139 84.2
Sabra01G0105000 Salix brachista HOM05D006675 ORTHO05D008302 2.8e-65 252.3 218 61.0
TPR.G19460 Trifolium pratense HOM05D006675 ORTHO05D008302 4.1e-64 248.4 139 82.0
Nitab4.5_0002188g0010 Nicotiana tabacum HOM05D006675 ORTHO05D008302 1.1e-58 230.3 181 65.7
CBR_g10842 Chara braunii HOM05D006675 ORTHO05D008302 5.7e-58 228.0 171 60.2
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 1.2e-52 210.3 114 82.5
SGA_v2.0_scaffold8G04249 Striga asiatica HOM05D006675 ORTHO05D008302 3.9e-51 205.3 121 77.7
Cre02.g076400 Chlamydomonas reinhardtii HOM05D006675 ORTHO05D008302 1.4e-48 196.8 174 49.4
arahy.Tifrunner.gnm1.ann1.XR7VEH Arachis hypogaea HOM05D006675 ORTHO05D008302 3.5e-47 192.2 117 71.8
AagrBONN_evm.TU.Sc2ySwM_228.5837 Anthoceros agrestis HOM05D006675 ORTHO05D008302 1.7e-46 189.9 146 62.3
arahy.Tifrunner.gnm1.ann1.1JB7Z5 Arachis hypogaea HOM05D000001 ORTHO05D000003 6.7e-43 177.9 185 52.4
arahy.Tifrunner.gnm1.ann1.K4EES2 Arachis hypogaea HOM05D000001 ORTHO05D000003 6.7e-43 177.9 185 52.4
Os01g0658500 Oryza sativa ssp. japonica HOM05D006675 ORTHO05D008302 3.5e-39 165.6 93 80.6
Ah.12g055570 Amaranthus hybridus HOM05D000160 ORTHO05D008302 1.7e-38 163.3 115 71.3
PRCOL_00001914 Prasinoderma coloniale HOM05D006675 ORTHO05D008302 2.5e-37 159.5 174 45.4
MCO12G007 Micromonas commoda HOM05D006675 ORTHO05D008302 2.7e-36 156.0 174 40.8
vmacro00263 Vaccinium macrocarpon HOM05D006675 ORTHO05D008302 4.7e-36 155.2 96 78.1
Hma1.2p1_0803F.1_g220920 Hydrangea macrophylla HOM05D006675 ORTHO05D008302 5.7e-34 148.3 177 47.5
arahy.Tifrunner.gnm1.ann1.DBHH8D Arachis hypogaea HOM05D006675 ORTHO05D008302 2.8e-33 146.0 116 58.6
Psat2g139880 Pisum sativum HOM05D006675 ORTHO05D008302 2.8e-33 146.0 91 74.7
GSVIVG01009131001 Vitis vinifera HOM05D006675 ORTHO05D008302 9.5e-29 131.0 80 77.5
BcaB07g30589 Brassica carinata HOM05D006675 ORTHO05D008302 5.9e-23 111.7 99 57.6
CARHR288450 Cardamine hirsuta HOM05D006675 ORTHO05D008302 1.0e-22 110.9 71 66.2
Actinidia29284 Actinidia chinensis HOM05D006675 ORTHO05D008302 8.6e-22 107.8 65 78.5
BcaB06g29627 Brassica carinata HOM05D006675 ORTHO05D008302 4.7e-20 102.1 100 57.0
Hund14383 Selenicereus undatus HOM05D006675 ORTHO05D008302 1.2e-18 97.4 56 80.4
A01p11020 Brassica napus HOM05D006675 ORTHO05D008302 9.8e-18 94.4 56 82.1
Haze_08131 Corylus avellana HOM05D006675 ORTHO05D008302 3.2e-16 89.4 50 84.0
FAN13G1728 Fragaria x ananassa HOM05D006675 ORTHO05D008302 2.3e-14 83.2 46 80.4
Gohir.D12G043050 Gossypium hirsutum HOM05D006675 ORTHO05D008302 8.6e-06 54.7 38 65.8
Phvul.002G134150 Phaseolus vulgaris HOM05D006675 ORTHO05D008302 8.6e-06 54.7 33 72.7


User provided reference genes

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