Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G00549 Aquilegia oxysepala HOM05D004645 ORTHO05D005693 8.7e-149 530.8 380 100.0
TAR629G2315 Trochodendron aralioides HOM05D004645 ORTHO05D005693 1.6e-110 403.7 331 78.2
PSO782G2658 Papaver somniferum HOM05D004645 ORTHO05D005693 6.7e-109 398.3 331 77.6
PSO063G6220 Papaver somniferum HOM05D004645 ORTHO05D005693 3.7e-107 392.5 331 77.6
TAR633G2534 Trochodendron aralioides HOM05D004645 ORTHO05D005693 6.5e-104 381.7 241 79.7
GSVIVG01024286001 Vitis vinifera HOM05D004645 ORTHO05D005693 1.3e-96 357.5 249 73.9
Manes.09G130100 Manihot esculenta HOM05D004645 ORTHO05D005693 5.0e-96 355.5 332 66.3
Thecc.05G223300 Theobroma cacao HOM05D004645 ORTHO05D005693 6.5e-96 355.1 335 71.6
Dinv01810 Davidia involucrata HOM05D004645 ORTHO05D005693 1.1e-95 354.4 336 75.3
Actinidia33801 Actinidia chinensis HOM05D004645 ORTHO05D005693 4.7e-94 349.0 333 71.2
CiPaw.06G036400 Carya illinoinensis HOM05D004645 ORTHO05D005693 6.1e-94 348.6 332 69.3
Ciclev10031859m.g Citrus clementina HOM05D004645 ORTHO05D005693 6.1e-94 348.6 332 69.6
Gohir.D03G055700 Gossypium hirsutum HOM05D004645 ORTHO05D005693 8.0e-94 348.2 335 70.7
VMungo1127G1262 Vigna mungo HOM05D004645 ORTHO05D005693 8.0e-94 348.2 332 67.2
Gorai.003G058500 Gossypium raimondii HOM05D004645 ORTHO05D005693 1.0e-93 347.8 336 71.4
Gohir.A02G114700 Gossypium hirsutum HOM05D004645 ORTHO05D005693 1.4e-93 347.4 335 70.1
CSS0029852 Camellia sinensis var. sinensis HOM05D004645 ORTHO05D005693 3.9e-93 345.9 336 72.9
Duzib177G0889 Durio zibethinus HOM05D004645 ORTHO05D005693 3.9e-93 345.9 249 71.5
CiPaw.05G212200 Carya illinoinensis HOM05D004645 ORTHO05D005693 5.2e-93 345.5 332 64.5
Phvul.011G016900 Phaseolus vulgaris HOM05D004645 ORTHO05D005693 5.2e-93 345.5 334 67.4
Glyma.09G223000 Glycine max HOM05D004645 ORTHO05D005693 1.5e-92 344.0 332 66.6
Lj1g0014871 Lotus japonicus HOM05D004645 ORTHO05D005693 1.5e-92 344.0 332 65.1
Glyma.12G014000 Glycine max HOM05D004645 ORTHO05D005693 2.0e-92 343.6 332 65.7
Prupe.2G329500 Prunus persica HOM05D004645 ORTHO05D005693 3.3e-92 342.8 332 73.5
CANSAT21G0324 Cannabis sativa HOM05D004645 ORTHO05D005693 4.4e-92 342.4 332 68.7
Hma1.2p1_0419F.1_g149550 Hydrangea macrophylla HOM05D004645 ORTHO05D005693 5.7e-92 342.0 355 69.0
CSS0046309 Camellia sinensis var. sinensis HOM05D004645 ORTHO05D005693 1.7e-91 340.5 336 69.9
TWI60G0474 Tripterygium wilfordii HOM05D004645 ORTHO05D005693 2.8e-91 339.7 333 67.3
RcHm_v2.0_Chr1g0384691 Rosa chinensis HOM05D004645 ORTHO05D005693 6.3e-91 338.6 332 67.2
Gohir.A13G158000 Gossypium hirsutum HOM05D004645 ORTHO05D005693 1.4e-90 337.4 249 71.5
Hund09812 Selenicereus undatus HOM05D004645 ORTHO05D005693 1.8e-90 337.0 249 69.9
Atru.chr12.1851 Acer truncatum HOM05D004645 ORTHO05D005693 2.4e-90 336.7 333 69.1
FAN10G3994 Fragaria x ananassa HOM05D004645 ORTHO05D005693 4.1e-90 335.9 332 63.6
arahy.Tifrunner.gnm1.ann1.3IB4NC Arachis hypogaea HOM05D004645 ORTHO05D005693 5.3e-90 335.5 340 70.9
arahy.Tifrunner.gnm1.ann1.7F5N7U Arachis hypogaea HOM05D004645 ORTHO05D005693 5.3e-90 335.5 340 70.9
FvH4_7g34300 Fragaria vesca HOM05D004645 ORTHO05D005693 5.3e-90 335.5 332 68.7
Potri.019G042800 Populus trichocarpa HOM05D004645 ORTHO05D005693 9.1e-90 334.7 368 66.0
MD01G1239600 Malus domestica HOM05D004645 ORTHO05D005693 2.6e-89 333.2 332 63.6
Medtr0004s0240 Medicago truncatula HOM05D004645 ORTHO05D005693 5.9e-89 332.0 334 65.6
Potri.013G076800 Populus trichocarpa HOM05D004645 ORTHO05D005693 2.9e-88 329.7 332 57.5
Duzib128G1942 Durio zibethinus HOM05D004645 ORTHO05D005693 1.1e-87 327.8 335 69.3
Manes.08G160200 Manihot esculenta HOM05D004645 ORTHO05D005693 5.5e-87 325.5 332 60.8
FAN03G2055 Fragaria x ananassa HOM05D004645 ORTHO05D005693 8.0e-86 321.6 352 66.8
A10p21880 Brassica napus HOM05D004645 ORTHO05D005693 4.0e-85 319.3 332 62.3
BraA10t44247Z Brassica rapa HOM05D004645 ORTHO05D005693 4.0e-85 319.3 332 62.3
Gohir.D13G162500 Gossypium hirsutum HOM05D004645 ORTHO05D005693 4.0e-85 319.3 249 69.1
Lj5g0009502 Lotus japonicus HOM05D004645 ORTHO05D005693 6.7e-85 318.5 332 65.7
C09p59630 Brassica napus HOM05D004645 ORTHO05D005693 2.0e-84 317.0 332 60.8
BcaC04g18782 Brassica carinata HOM05D004645 ORTHO05D005693 3.3e-84 316.2 332 61.1
BolC9t58802H Brassica oleracea HOM05D004645 ORTHO05D005693 3.3e-84 316.2 332 60.8
Sp6g26710 Schrenkiella parvula HOM05D004645 ORTHO05D005693 3.3e-84 316.2 335 63.3
THA.LOC104820831 Tarenaya hassleriana HOM05D004645 ORTHO05D005693 5.7e-84 315.5 333 56.8
BcaB08g36765 Brassica carinata HOM05D004645 ORTHO05D005693 1.7e-83 313.9 332 61.7
Carub.0006s1574 Capsella rubella HOM05D004645 ORTHO05D005693 1.7e-83 313.9 332 61.1
AL6G28600 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 8.2e-83 311.6 332 60.8
AT5G17510 Arabidopsis thaliana HOM05D004645 ORTHO05D005693 1.1e-82 311.2 332 59.9
Solyc03g097300.4 Solanum lycopersicum HOM05D004645 ORTHO05D005693 5.3e-82 308.9 333 58.6
Sopen03g028070 Solanum pennellii HOM05D004645 ORTHO05D005693 5.3e-82 308.9 333 58.6
Nitab4.5_0009278g0030 Nicotiana tabacum HOM05D004645 ORTHO05D005693 9.1e-82 308.1 251 63.3
Lj3C883G6 Lonicera japonica HOM05D000507 ORTHO05D000416 1.6e-81 307.4 250 66.8
PGSC0003DMG400026490 Solanum tuberosum HOM05D004645 ORTHO05D005693 1.6e-81 307.4 333 59.5
CAN.G732.33 Capsicum annuum HOM05D004645 ORTHO05D005693 2.0e-81 307.0 251 62.9
Aa31LG11G12160 Aethionema arabicum HOM05D004645 ORTHO05D005693 4.5e-81 305.8 331 58.6
Lalb_Chr03g0037841 Lupinus albus HOM05D004645 ORTHO05D005693 7.7e-81 305.1 334 60.5
ECA238G1292 Erigeron canadensis HOM05D004645 ORTHO05D005693 1.0e-80 304.7 250 66.0
Peaxi162Scf00516g00425 Petunia axillaris HOM05D004645 ORTHO05D005693 1.0e-80 304.7 247 64.8
TWI32G1082 Tripterygium wilfordii HOM05D004645 ORTHO05D005693 1.0e-80 304.7 341 68.3
Cc02_g00050 Coffea canephora HOM05D004645 ORTHO05D005693 2.2e-80 303.5 331 59.2
Nitab4.5_0000021g0850 Nicotiana tabacum HOM05D004645 ORTHO05D005693 2.9e-80 303.1 251 62.5
PGR119G0624 Punica granatum HOM05D004645 ORTHO05D005693 5.0e-80 302.4 332 62.7
Sabra19G0053400 Salix brachista HOM05D004645 ORTHO05D005693 5.0e-80 302.4 288 58.0
HanXRQChr14g0434641 Helianthus annuus HOM05D004645 ORTHO05D005693 1.9e-79 300.4 332 53.6
Oeu028988.1 Olea europaea HOM05D004645 ORTHO05D005693 5.5e-79 298.9 333 55.0
CDE04G1041 Ceratophyllum demersum HOM05D004645 ORTHO05D005693 1.2e-78 297.7 334 52.7
HanXRQChr11g0333681 Helianthus annuus HOM05D004645 ORTHO05D005693 2.7e-78 296.6 335 54.0
Lalb_Chr19g0140101 Lupinus albus HOM05D004645 ORTHO05D005693 4.7e-78 295.8 242 64.0
Gorai.013G184600 Gossypium raimondii HOM05D004645 ORTHO05D005693 1.0e-77 294.7 249 65.1
THA.LOC104802906 Tarenaya hassleriana HOM05D004645 ORTHO05D005693 1.4e-77 294.3 335 51.9
ClCG09G013170 Citrullus lanatus HOM05D004645 ORTHO05D005693 1.8e-77 293.9 337 63.5
MSTRG.26920 Avicennia marina HOM05D004645 ORTHO05D005693 2.3e-77 293.5 332 52.4
Sed0013778 Sechium edule HOM05D004645 ORTHO05D005693 3.4e-76 289.7 336 63.7
COL.COLO4_15124 Corchorus olitorius HOM05D004645 ORTHO05D005693 9.8e-76 288.1 217 71.0
MELO3C014340.2 Cucumis melo HOM05D004645 ORTHO05D005693 2.8e-75 286.6 335 63.6
Migut.L00703 Erythranthe guttata HOM05D004645 ORTHO05D005693 6.3e-75 285.4 253 62.1
Oeu027899.1 Olea europaea HOM05D004645 ORTHO05D005693 2.4e-74 283.5 333 57.1
Os12g0465700 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 4.1e-74 282.7 245 61.6
Lsat_1_v5_gn_8_3080 Lactuca sativa HOM05D004645 ORTHO05D005693 5.4e-74 282.3 250 63.2
CARHR195680 Cardamine hirsuta HOM05D004645 ORTHO05D005693 2.0e-73 280.4 332 59.6
Thhalv10013879m.g Eutrema salsugineum HOM05D004645 ORTHO05D005693 1.0e-72 278.1 332 57.2
CsaV3_6G036830 Cucumis sativus L. HOM05D004645 ORTHO05D005693 2.3e-72 276.9 250 62.0
unitig_92.g28227 Utricularia gibba HOM05D004645 ORTHO05D005693 5.0e-72 275.8 242 61.2
QL09p020526 Quercus lobata HOM05D004645 ORTHO05D005693 1.5e-71 274.2 215 70.7
Haze_00365 Corylus avellana HOM05D004645 ORTHO05D005693 1.9e-71 273.9 216 69.0
TPR.G9835 Trifolium pratense HOM05D004645 ORTHO05D005693 7.2e-71 271.9 334 60.8
Ca_19601_v3 Cicer arietinum L. HOM05D004645 ORTHO05D005693 9.8e-68 261.5 219 66.2
AUR62028214 Chenopodium quinoa HOM05D004645 ORTHO05D005693 2.4e-66 256.9 249 57.8
Thhalv10020936m.g Eutrema salsugineum HOM05D004645 ORTHO05D005693 7.0e-66 255.4 355 57.5
HanXRQChr05g0156891 Helianthus annuus HOM05D004645 ORTHO05D005693 3.5e-65 253.1 246 58.5
ECA233G1188 Erigeron canadensis HOM05D004645 ORTHO05D005693 1.3e-64 251.1 242 57.0
SHI15009 Sapria himalayana HOM05D004645 ORTHO05D005693 1.3e-64 251.1 253 55.3
HPP92_006448 Vanilla planifolia HOM05D004645 ORTHO05D005693 6.6e-64 248.8 337 58.8
DCAR_010525 Daucus carota HOM05D004645 ORTHO05D005693 1.1e-63 248.1 231 61.0
EL10Ac3g05041 Beta vulgaris HOM05D004645 ORTHO05D005693 1.5e-63 247.7 400 48.5
Aa31LG5G13980 Aethionema arabicum HOM05D000507 ORTHO05D000416 2.8e-62 243.4 248 55.6
SGA_v2.0_scaffold18G08211 Striga asiatica HOM05D004645 ORTHO05D005693 1.0e-61 241.5 264 55.3
AUR62002096 Chenopodium quinoa HOM05D004645 ORTHO05D005693 6.8e-61 238.8 240 56.7
vmacro06368 Vaccinium macrocarpon HOM05D004645 ORTHO05D005693 3.4e-60 236.5 232 62.5
DCAR_014580 Daucus carota HOM05D004645 ORTHO05D005693 7.5e-60 235.3 248 54.0
ATR0582G008 Amborella trichopoda HOM05D004645 ORTHO05D005693 6.4e-59 232.3 249 55.0
Lj3g0007707 Lotus japonicus HOM05D004645 ORTHO05D005693 1.1e-58 231.5 207 62.3
AL3G13140 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 7.0e-58 228.8 339 47.8
Rhsim03G0224700 Rhododendron simsii HOM05D004645 ORTHO05D005693 2.7e-57 226.9 337 59.1
SEGI_39287 Sequoiadendron giganteum HOM05D004645 ORTHO05D005693 2.7e-57 226.9 262 50.4
BNapus_Darmor_BZH_scaffold_162p00170 Brassica napus HOM05D004645 ORTHO05D005693 1.3e-56 224.6 256 52.0
BolC1t05829H Brassica oleracea HOM05D004645 ORTHO05D005693 1.3e-56 224.6 256 52.0
Cfa016080 Carpinus fangiana HOM05D004645 ORTHO05D005693 6.6e-56 222.2 190 65.3
Sp3g02460 Schrenkiella parvula HOM05D004645 ORTHO05D005693 2.5e-55 220.3 249 50.6
Sc08g0005180 Simmondsia chinensis HOM05D004645 ORTHO05D005693 3.3e-55 219.9 219 63.0
Carub.0003s0260 Capsella rubella HOM05D004645 ORTHO05D005693 5.6e-55 219.2 259 48.3
A06p26400 Brassica napus HOM05D004645 ORTHO05D005693 9.5e-55 218.4 259 51.4
BNapus_Darmor_BZH_scaffold_78p00150 Brassica napus HOM05D004645 ORTHO05D005693 9.5e-55 218.4 259 51.4
BraA01t04578Z Brassica rapa HOM05D004645 ORTHO05D005693 2.1e-54 217.2 259 51.4
Ah.04g156130 Amaranthus hybridus HOM05D004645 ORTHO05D005693 6.2e-54 215.7 338 51.8
AT3G03460 Arabidopsis thaliana HOM05D004645 ORTHO05D005693 1.8e-53 214.2 261 49.8
BcaC09g47748 Brassica carinata HOM05D004645 ORTHO05D005693 1.2e-49 201.4 253 49.4
HPP92_027983 Vanilla planifolia HOM05D004645 ORTHO05D005693 5.6e-47 192.6 219 65.8
TAR636G0353 Trochodendron aralioides HOM05D004645 ORTHO05D005693 1.7e-40 171.0 132 69.7
FAN01G0394 Fragaria x ananassa HOM05D004645 ORTHO05D005693 3.8e-35 153.3 102 75.5
Psat7g154680 Pisum sativum HOM05D004645 ORTHO05D005693 1.4e-34 151.4 158 57.0
CARHR077490 Cardamine hirsuta HOM05D004645 ORTHO05D005693 3.9e-32 143.3 222 45.0
Mapoly0012s0180 Marchantia polymorpha HOM05D004645 ORTHO05D005693 5.8e-28 129.4 157 42.7
AagrBONN_evm.TU.Sc2ySwM_228.1766 Anthoceros agrestis HOM05D004645 ORTHO05D005693 3.8e-27 126.7 145 44.8
Pp3c11_2710 Physcomitrium patens HOM05D004645 ORTHO05D005693 6.4e-27 125.9 132 48.5
HPP92_028759 Vanilla planifolia HOM05D004645 ORTHO05D005693 7.8e-25 119.0 128 52.3
CBR_g4003 Chara braunii HOM05D004645 ORTHO05D005693 9.9e-20 102.1 148 36.5
Os04g0393100 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 2.2e-19 100.9 121 43.0
Actinidia04560 Actinidia chinensis HOM05D004645 ORTHO05D005693 4.2e-18 96.7 114 56.1
Os04g0393200 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 7.9e-17 92.4 126 40.5
Zm00001eb421230 Zea mays HOM05D004645 ORTHO05D005693 7.9e-17 92.4 130 36.9
Dinv17242 Davidia involucrata HOM05D004645 ORTHO05D005693 5.6e-15 86.3 123 71.5
Psat0s904g0040 Pisum sativum HOM05D004645 ORTHO05D005693 6.9e-13 79.3 116 46.6
FAN01G2860 Fragaria x ananassa HOM05D004645 ORTHO05D005693 1.2e-12 78.6 117 70.9
Haze_00364 Corylus avellana HOM05D004645 ORTHO05D005693 2.9e-11 73.9 118 79.7
Cpa.g.c34419 Carica papaya HOM05D004645 ORTHO05D005693 4.9e-11 73.2 123 71.5
Sabra13G0065800 Salix brachista HOM05D004645 ORTHO05D005693 9.3e-10 68.9 112 45.5
QL09p020516 Quercus lobata HOM05D004645 ORTHO05D005693 1.6e-09 68.2 33 81.8
AL3G45560 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 4.6e-09 66.6 48 56.2
ECA075G0001 Erigeron canadensis HOM05D004645 ORTHO05D005693 5.7e-07 59.7 34 79.4
HPP92_027982 Vanilla planifolia HOM05D004645 ORTHO05D005693 1.3e-06 58.5 99 45.5


User provided reference genes

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