Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G00387 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 3.5e-74 281.6 144 100.0
Aqoxy3G02494 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 8.3e-68 260.4 145 95.2
CsaV3_1G001710 Cucumis sativus L. HOM05D004802 ORTHO05D005591 3.7e-60 235.0 144 83.3
Potri.014G111100 Populus trichocarpa HOM05D004802 ORTHO05D005591 3.5e-58 228.4 144 81.9
Aqoxy3G01788 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 5.9e-58 227.6 146 80.8
ECA232G0284 Erigeron canadensis HOM05D004802 ORTHO05D005591 3.8e-57 224.9 144 79.2
MBI19_g12136_MAGBIO Magnolia biondii HOM05D004802 ORTHO05D005591 3.8e-57 224.9 144 81.9
RcHm_v2.0_Chr7g0179521 Rosa chinensis HOM05D004802 ORTHO05D005591 3.8e-57 224.9 144 81.2
PGR083G1798 Punica granatum HOM05D004802 ORTHO05D005591 5.0e-57 224.6 144 81.9
Sed0010100 Sechium edule HOM05D004802 ORTHO05D005591 5.0e-57 224.6 144 78.5
Lsat_1_v5_gn_5_17000 Lactuca sativa HOM05D004802 ORTHO05D005591 8.6e-57 223.8 144 79.2
HanXRQChr05g0155531 Helianthus annuus HOM05D004802 ORTHO05D005591 1.5e-56 223.0 144 80.6
Prupe.5G177600 Prunus persica HOM05D004802 ORTHO05D005591 1.5e-56 223.0 146 82.9
Migut.D01783 Erythranthe guttata HOM05D004802 ORTHO05D005591 1.9e-56 222.6 144 79.2
SGA_v2.0_scaffold114G31844 Striga asiatica HOM05D004802 ORTHO05D005591 2.5e-56 222.2 144 80.6
Cpa.g.sc110.33 Carica papaya HOM05D004802 ORTHO05D005591 3.3e-56 221.9 144 79.2
MD14G1184900 Malus domestica HOM05D004802 ORTHO05D005591 3.3e-56 221.9 142 80.3
Cfa019082 Carpinus fangiana HOM05D004802 ORTHO05D005591 4.3e-56 221.5 144 79.9
CSS0033619 Camellia sinensis var. sinensis HOM05D004802 ORTHO05D005591 5.6e-56 221.1 144 78.5
MSTRG.23103 Avicennia marina HOM05D004802 ORTHO05D005591 7.3e-56 220.7 144 78.5
Glyma.04G171700 Glycine max HOM05D004802 ORTHO05D005591 7.3e-56 220.7 144 79.2
TAR362G1012 Trochodendron aralioides HOM05D004802 ORTHO05D005591 7.3e-56 220.7 144 79.2
Eucgr.B00348 Eucalyptus grandis HOM05D004802 ORTHO05D005591 9.5e-56 220.3 146 80.8
DCAR_016496 Daucus carota HOM05D004802 ORTHO05D005591 2.1e-55 219.2 144 77.8
Glyma.06G192200 Glycine max HOM05D004802 ORTHO05D005591 6.1e-55 217.6 144 79.9
GSVIVG01007807001 Vitis vinifera HOM05D004802 ORTHO05D005591 6.1e-55 217.6 144 78.5
DCAR_021562 Daucus carota HOM05D004802 ORTHO05D005591 8.0e-55 217.2 144 77.8
MBI18_g21823_MAGBIO Magnolia biondii HOM05D004802 ORTHO05D005591 1.0e-54 216.9 144 78.5
Manes.12G158200 Manihot esculenta HOM05D004802 ORTHO05D005591 1.0e-54 216.9 144 78.5
Lalb_Chr23g0265291 Lupinus albus HOM05D004802 ORTHO05D005591 1.4e-54 216.5 150 76.0
Nitab4.5_0000499g0020 Nicotiana tabacum HOM05D004802 ORTHO05D005591 4.0e-54 214.9 144 77.8
ATR0796G060 Amborella trichopoda HOM05D004802 ORTHO05D005591 5.2e-54 214.5 144 76.4
Hma1.2p1_0483F.1_g162710 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 5.2e-54 214.5 144 76.4
LjContig00081g0027263 Lotus japonicus HOM05D004802 ORTHO05D005591 6.8e-54 214.2 144 78.5
PSO170G0191 Papaver somniferum HOM05D004802 ORTHO05D005591 6.8e-54 214.2 148 75.7
Sc12g0005500 Simmondsia chinensis HOM05D004802 ORTHO05D005591 6.8e-54 214.2 144 74.3
Dinv41117 Davidia involucrata HOM05D001600 ORTHO05D001502 8.9e-54 213.8 131 82.4
CDE01G0824 Ceratophyllum demersum HOM05D004802 ORTHO05D005591 1.2e-53 213.4 145 77.9
Psat2g170440 Pisum sativum HOM05D004802 ORTHO05D005591 1.2e-53 213.4 144 76.4
QL03p066954 Quercus lobata HOM05D004802 ORTHO05D005591 1.2e-53 213.4 143 77.6
BolC5t29353H Brassica oleracea HOM05D000129 ORTHO05D005591 1.5e-53 213.0 145 76.6
vmacro16596 Vaccinium macrocarpon HOM05D004802 ORTHO05D005591 2.0e-53 212.6 144 75.0
TPR.G20968 Trifolium pratense HOM05D004802 ORTHO05D005591 3.4e-53 211.8 145 77.9
TPR.G6374 Trifolium pratense HOM05D004802 ORTHO05D005591 3.4e-53 211.8 145 77.9
CANSAT80G2080 Cannabis sativa HOM05D004802 ORTHO05D005591 4.4e-53 211.5 144 75.7
PSO782G1633 Papaver somniferum HOM05D004802 ORTHO05D005591 4.4e-53 211.5 148 76.4
Sp1g06517 Schrenkiella parvula HOM05D004802 ORTHO05D005591 5.8e-53 211.1 144 73.6
BraA06t23701Z Brassica rapa HOM05D004802 ORTHO05D005591 7.5e-53 210.7 145 75.9
AL1G18110 Arabidopsis lyrata HOM05D004802 ORTHO05D005591 1.7e-52 209.5 144 72.9
BcaC07g41973 Brassica carinata HOM05D004802 ORTHO05D005591 2.2e-52 209.1 148 75.0
A09p66160 Brassica napus HOM05D004802 ORTHO05D005591 2.2e-52 209.1 144 73.6
C08p50320 Brassica napus HOM05D004802 ORTHO05D005591 2.2e-52 209.1 148 75.0
BolC8t52561H Brassica oleracea HOM05D004802 ORTHO05D005591 2.2e-52 209.1 148 75.0
BraA09t41954Z Brassica rapa HOM05D004802 ORTHO05D005591 2.2e-52 209.1 144 73.6
arahy.Tifrunner.gnm1.ann1.J5PS4T Arachis hypogaea HOM05D004802 ORTHO05D005591 2.9e-52 208.8 146 75.3
HPP92_014441 Vanilla planifolia HOM05D004802 ORTHO05D005591 2.9e-52 208.8 139 77.7
Actinidia34948 Actinidia chinensis HOM05D004802 ORTHO05D005591 3.7e-52 208.4 132 78.0
Oeu026523.1 Olea europaea HOM05D004802 ORTHO05D005591 3.7e-52 208.4 145 78.6
VMungo1309G2385 Vigna mungo HOM05D004802 ORTHO05D005591 3.7e-52 208.4 144 76.4
Solyc03g114050.3 Solanum lycopersicum HOM05D004802 ORTHO05D005591 4.9e-52 208.0 144 77.8
Sopen03g033100 Solanum pennellii HOM05D004802 ORTHO05D005591 4.9e-52 208.0 144 77.8
arahy.Tifrunner.gnm1.ann1.H02ACK Arachis hypogaea HOM05D004802 ORTHO05D005591 6.4e-52 207.6 146 75.3
FvH4_5g16620 Fragaria vesca HOM05D004802 ORTHO05D005591 6.4e-52 207.6 144 75.7
HanXRQChr05g0163301 Helianthus annuus HOM05D004802 ORTHO05D005591 6.4e-52 207.6 147 78.9
HanXRQChr05g0163571 Helianthus annuus HOM05D004802 ORTHO05D005591 6.4e-52 207.6 147 78.9
unitig_27.g24928 Utricularia gibba HOM05D004802 ORTHO05D005591 6.4e-52 207.6 144 77.1
THA.LOC104818227 Tarenaya hassleriana HOM05D004802 ORTHO05D005591 8.3e-52 207.2 146 76.0
Cc00_g03600 Coffea canephora HOM05D004802 ORTHO05D005591 1.1e-51 206.8 147 74.1
Rhsim12G0162600 Rhododendron simsii HOM05D004802 ORTHO05D005591 1.1e-51 206.8 144 73.6
Phvul.009G188900 Phaseolus vulgaris HOM05D004802 ORTHO05D005591 1.4e-51 206.5 144 76.4
AT1G07830 Arabidopsis thaliana HOM05D004802 ORTHO05D005591 1.8e-51 206.1 145 73.8
CARHR007640 Cardamine hirsuta HOM05D004802 ORTHO05D005591 1.8e-51 206.1 144 71.5
FAN18G4009 Fragaria x ananassa HOM05D004802 ORTHO05D005591 1.8e-51 206.1 144 75.0
FAN13G0264 Fragaria x ananassa HOM05D004802 ORTHO05D005591 2.4e-51 205.7 144 75.7
EL10Ac7g17734 Beta vulgaris HOM05D004802 ORTHO05D005591 3.2e-51 205.3 144 76.4
Peaxi162Scf00689g00332 Petunia axillaris HOM05D004802 ORTHO05D005591 3.2e-51 205.3 144 77.8
TWI32G0003 Tripterygium wilfordii HOM05D004802 ORTHO05D005591 3.2e-51 205.3 144 76.4
C05p05910 Brassica napus HOM05D005594 ORTHO05D006403 4.1e-51 204.9 140 76.4
FAN08G2523 Fragaria x ananassa HOM05D004802 ORTHO05D005591 4.1e-51 204.9 142 75.4
Manes.15G185900 Manihot esculenta HOM05D004802 ORTHO05D005591 5.4e-51 204.5 144 75.7
Carub.0005s0629 Capsella rubella HOM05D004802 ORTHO05D005591 7.0e-51 204.1 145 73.1
Medtr5g015850 Medicago truncatula HOM05D004802 ORTHO05D005591 9.2e-51 203.8 144 75.7
Sc16g0001640 Simmondsia chinensis HOM05D004802 ORTHO05D005591 1.2e-50 203.4 145 73.1
Actinidia19087 Actinidia chinensis HOM05D004802 ORTHO05D005591 2.0e-50 202.6 132 78.8
Ca_06425_v3 Cicer arietinum L. HOM05D000308 ORTHO05D000194 2.0e-50 202.6 111 88.3
ECA246G1319 Erigeron canadensis HOM05D004802 ORTHO05D005591 2.0e-50 202.6 165 67.3
THA.LOC104821462 Tarenaya hassleriana HOM05D004802 ORTHO05D005591 2.0e-50 202.6 140 77.1
TWI75G1644 Tripterygium wilfordii HOM05D004802 ORTHO05D005591 3.5e-50 201.8 144 76.4
BcaB02g06722 Brassica carinata HOM05D004802 ORTHO05D005591 4.6e-50 201.4 147 70.7
AUR62025410 Chenopodium quinoa HOM05D004802 ORTHO05D005591 4.6e-50 201.4 144 74.3
MD06G1178500 Malus domestica HOM05D004802 ORTHO05D005591 4.6e-50 201.4 111 90.1
Hund18328 Selenicereus undatus HOM05D004802 ORTHO05D005591 4.6e-50 201.4 140 75.7
AUR62008830 Chenopodium quinoa HOM05D004802 ORTHO05D005591 1.0e-49 200.3 144 73.6
Cpa.g.sc170.28 Carica papaya HOM05D004802 ORTHO05D005591 1.3e-49 199.9 133 75.9
PGSC0003DMG400024483 Solanum tuberosum HOM05D004802 ORTHO05D005591 1.3e-49 199.9 144 74.3
MELO3C017111.2 Cucumis melo HOM05D004802 ORTHO05D005591 1.7e-49 199.5 220 54.5
Atru.chr9.2421 Acer truncatum HOM05D004802 ORTHO05D005591 2.3e-49 199.1 153 71.2
Ah.08g213760 Amaranthus hybridus HOM05D004802 ORTHO05D005591 3.0e-49 198.7 144 72.9
SalBow2G1273 Salvia bowleyana HOM05D004802 ORTHO05D005591 3.9e-49 198.4 144 72.9
Potri.002G185800 Populus trichocarpa HOM05D004802 ORTHO05D005591 8.6e-49 197.2 145 71.7
SEGI_23384 Sequoiadendron giganteum HOM05D004802 ORTHO05D005591 1.1e-48 196.8 144 72.2
BcaC07g42500 Brassica carinata HOM05D004802 ORTHO05D005591 1.5e-48 196.4 147 71.4
COL.COLO4_24762 Corchorus olitorius HOM05D004802 ORTHO05D005591 1.5e-48 196.4 145 75.9
Aa31LG3G15940 Aethionema arabicum HOM05D004802 ORTHO05D005591 1.9e-48 196.1 146 69.9
Thhalv10009035m.g Eutrema salsugineum HOM05D004802 ORTHO05D005591 2.5e-48 195.7 145 71.0
Nitab4.5_0001422g0100 Nicotiana tabacum HOM05D004802 ORTHO05D005591 7.3e-48 194.1 116 83.6
Thecc.03G006700 Theobroma cacao HOM05D004802 ORTHO05D005591 7.3e-48 194.1 145 75.2
Ciclev10022742m.g Citrus clementina HOM05D004802 ORTHO05D005591 1.2e-47 193.4 145 72.4
Duzib068G0850 Durio zibethinus HOM05D004802 ORTHO05D005591 1.2e-47 193.4 148 73.0
arahy.Tifrunner.gnm1.ann1.RYE93B Arachis hypogaea HOM05D004802 ORTHO05D005591 1.6e-47 193.0 170 64.1
Peaxi162Scf00017g02344 Petunia axillaris HOM05D004802 ORTHO05D005591 2.1e-47 192.6 145 72.4
Zm00001eb378540 Zea mays HOM05D004802 ORTHO05D005591 2.1e-47 192.6 126 77.8
Gohir.A12G276300 Gossypium hirsutum HOM05D004802 ORTHO05D005591 1.1e-46 190.3 110 87.3
Gorai.008G297400 Gossypium raimondii HOM05D004802 ORTHO05D005591 1.1e-46 190.3 110 87.3
Hma1.2p1_2640F.1_g325880 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 1.1e-46 190.3 116 85.3
Thhalv10014955m.g Eutrema salsugineum HOM05D004802 ORTHO05D005591 1.8e-46 189.5 146 69.2
Gohir.D12G276900 Gossypium hirsutum HOM05D004802 ORTHO05D005591 4.0e-46 188.3 110 86.4
Rhsim08G0169000 Rhododendron simsii HOM05D004802 ORTHO05D005591 4.4e-45 184.9 175 58.3
FAN04G1836 Fragaria x ananassa HOM05D004802 ORTHO05D005591 2.2e-44 182.6 111 82.0
Dinv25814 Davidia involucrata HOM05D004802 ORTHO05D005591 3.7e-44 181.8 140 70.0
Os06g0128500 Oryza sativa ssp. japonica HOM05D004802 ORTHO05D005591 8.3e-44 180.6 141 68.1
Nitab4.5_0008768g0020 Nicotiana tabacum HOM05D004802 ORTHO05D005591 1.3e-41 173.3 205 52.2
QL10p013461 Quercus lobata HOM05D004802 ORTHO05D005591 4.3e-40 168.3 91 91.2
RcHm_v2.0_Chr3g0484411 Rosa chinensis HOM05D004802 ORTHO05D005591 9.5e-40 167.2 90 90.0
Haze_07452 Corylus avellana HOM05D004802 ORTHO05D005591 1.2e-39 166.8 110 77.3
ClCG06G016810 Citrullus lanatus HOM05D004802 ORTHO05D005591 1.6e-39 166.4 92 90.2
CiPaw.11G030400 Carya illinoinensis HOM05D004802 ORTHO05D005591 2.8e-39 165.6 108 79.6
QL03p067058 Quercus lobata HOM05D004802 ORTHO05D005591 1.5e-37 159.8 88 88.6
Cc00_g07690 Coffea canephora HOM05D004802 ORTHO05D005591 1.9e-35 152.9 109 71.6
Nn2g12605 Nelumbo nucifera HOM05D004802 ORTHO05D005591 4.6e-34 148.3 98 77.6
Cc00_g30360 Coffea canephora HOM05D004802 ORTHO05D005591 1.2e-29 133.7 112 64.3
Pp3c17_20320 Physcomitrium patens HOM05D004802 ORTHO05D005591 1.2e-29 133.7 120 56.7
Nitab4.5_0000003g0430 Nicotiana tabacum HOM05D004802 ORTHO05D005591 3.4e-29 132.1 146 56.2
Mapoly0009s0030 Marchantia polymorpha HOM05D004802 ORTHO05D005591 3.8e-28 128.6 108 60.2
RcHm_v2.0_Chr3g0484341 Rosa chinensis HOM05D004802 ORTHO05D005591 3.9e-25 118.6 63 92.1
CBR_g30055 Chara braunii HOM05D004802 ORTHO05D005591 4.3e-24 115.2 109 58.7
Hma1.2p1_0107F.1_g051480 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 5.2e-22 108.2 60 88.3
AagrBONN_evm.TU.Sc2ySwM_368.3252 Anthoceros agrestis HOM05D004802 ORTHO05D005591 2.4e-19 99.4 73 64.4
SMO228G0088 Selaginella moellendorffii HOM05D004802 ORTHO05D005591 3.2e-19 99.0 86 55.8
SHI01132 Sapria himalayana HOM05D004802 ORTHO05D005591 2.7e-18 95.9 89 59.6
A06p04970 Brassica napus HOM05D004802 ORTHO05D005591 9.0e-14 80.9 113 45.1
MCO15G004 Micromonas commoda HOM05D004802 ORTHO05D005591 1.5e-13 80.1 123 42.3
Pp3c14_16960 Physcomitrium patens HOM05D004802 ORTHO05D005591 3.4e-13 79.0 63 61.9
Haze_26898 Corylus avellana HOM05D004802 ORTHO05D005591 4.9e-12 75.1 101 41.6
RcHm_v2.0_Chr2g0130991 Rosa chinensis HOM05D004802 ORTHO05D005591 3.5e-10 68.9 68 58.8
A09p37440 Brassica napus HOM05D004802 ORTHO05D005591 1.8e-09 66.6 48 70.8
CSS0004783 Camellia sinensis var. sinensis HOM05D004802 ORTHO05D005591 8.7e-09 64.3 59 55.9
Haze_07453 Corylus avellana HOM05D004802 ORTHO05D005591 5.6e-08 61.6 35 82.9
Cfa024847 Carpinus fangiana HOM05D004802 ORTHO05D005591 1.1e-06 57.4 83 41.0
PRCOL_00002926 Prasinoderma coloniale HOM05D004802 ORTHO05D005591 1.1e-06 57.4 103 38.8
BcaC02g11004 Brassica carinata HOM05D004802 ORTHO05D005591 5.3e-06 55.1 43 67.4
C04p22280 Brassica napus HOM05D004802 ORTHO05D020149 5.3e-06 55.1 43 67.4


User provided reference genes

Program Settings