Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G00324 Aquilegia oxysepala HOM05D004902 ORTHO05D006603 0.0e+00 1140.6 576 100.0
TAR362G0117 Trochodendron aralioides HOM05D004902 ORTHO05D006603 3.9e-286 987.6 570 86.7
Dinv40776 Davidia involucrata HOM05D004902 ORTHO05D006603 3.9e-278 961.1 561 85.7
QL08p009339 Quercus lobata HOM05D004902 ORTHO05D006603 1.7e-276 955.7 564 84.6
Prupe.4G217200 Prunus persica HOM05D004902 ORTHO05D006603 2.8e-276 954.9 570 84.6
MD03G1198000 Malus domestica HOM05D004902 ORTHO05D006603 8.2e-276 953.4 569 84.2
Ciclev10007818m.g Citrus clementina HOM05D004902 ORTHO05D006603 1.2e-274 949.5 573 83.8
Atru.chr2.3483 Acer truncatum HOM05D004902 ORTHO05D006603 2.0e-274 948.7 571 83.5
arahy.Tifrunner.gnm1.ann1.67NMHM Arachis hypogaea HOM05D004902 ORTHO05D006603 2.0e-274 948.7 573 83.1
Cfa020314 Carpinus fangiana HOM05D004902 ORTHO05D006603 7.7e-274 946.8 569 83.5
Ca_14752_v3 Cicer arietinum L. HOM05D004902 ORTHO05D006603 7.7e-274 946.8 581 82.4
TWI39G0824 Tripterygium wilfordii HOM05D004902 ORTHO05D006603 7.7e-274 946.8 569 83.8
TPR.G33794 Trifolium pratense HOM05D004902 ORTHO05D006603 1.0e-273 946.4 573 82.5
GSVIVG01037683001 Vitis vinifera HOM05D004902 ORTHO05D006603 1.0e-273 946.4 555 85.9
Hma1.2p1_0036F.1_g023440 Hydrangea macrophylla HOM05D004902 ORTHO05D006603 1.3e-273 946.0 556 84.9
Phvul.006G046400 Phaseolus vulgaris HOM05D004902 ORTHO05D006603 1.7e-273 945.7 573 83.4
Medtr3g052850 Medicago truncatula HOM05D004902 ORTHO05D006603 6.5e-273 943.7 573 81.8
RcHm_v2.0_Chr5g0040671 Rosa chinensis HOM05D004902 ORTHO05D006603 6.5e-273 943.7 566 83.7
CiPaw.11G191900 Carya illinoinensis HOM05D004902 ORTHO05D006603 1.9e-272 942.2 575 82.8
MELO3C013152.2 Cucumis melo HOM05D004902 ORTHO05D006603 7.2e-272 940.3 577 82.1
Glyma.18G093200 Glycine max HOM05D004902 ORTHO05D006603 7.2e-272 940.3 548 85.2
Gohir.A11G067600 Gossypium hirsutum HOM05D004902 ORTHO05D006603 9.4e-272 939.9 575 83.0
Psat5g177120 Pisum sativum HOM05D004902 ORTHO05D006603 9.4e-272 939.9 573 82.0
CSS0007833 Camellia sinensis var. sinensis HOM05D004902 ORTHO05D006603 1.2e-271 939.5 562 83.8
Manes.03G132000 Manihot esculenta HOM05D004902 ORTHO05D006603 2.7e-271 938.3 569 83.3
CSS0000094 Camellia sinensis var. sinensis HOM05D004902 ORTHO05D006603 3.6e-271 937.9 562 83.6
Glyma.18G108300 Glycine max HOM05D004902 ORTHO05D006603 3.6e-271 937.9 548 84.7
FAN18G4155 Fragaria x ananassa HOM05D004902 ORTHO05D006603 1.0e-270 936.4 579 82.6
Sed0009199 Sechium edule HOM05D004902 ORTHO05D006603 1.0e-270 936.4 566 83.0
Actinidia10742 Actinidia chinensis HOM05D004902 ORTHO05D006603 1.4e-270 936.0 580 81.9
arahy.Tifrunner.gnm1.ann1.E3581I Arachis hypogaea HOM05D004902 ORTHO05D006603 1.4e-270 936.0 589 80.3
Gohir.D11G071500 Gossypium hirsutum HOM05D004902 ORTHO05D006603 1.4e-270 936.0 575 82.4
SGA_v2.0_scaffold172G39008 Striga asiatica HOM05D004902 ORTHO05D006603 1.8e-270 935.6 553 85.2
Eucgr.F00742 Eucalyptus grandis HOM05D004902 ORTHO05D006603 2.3e-270 935.3 556 82.2
Gorai.007G076800 Gossypium raimondii HOM05D004902 ORTHO05D006603 2.3e-270 935.3 552 84.6
THA.LOC104811618 Tarenaya hassleriana HOM05D004902 ORTHO05D006603 2.0e-269 932.2 569 82.1
CANSAT11G1621 Cannabis sativa HOM05D004902 ORTHO05D006603 9.7e-269 929.9 561 84.0
CAN.G337.72 Capsicum annuum HOM05D004902 ORTHO05D006603 9.7e-269 929.9 554 83.9
Migut.M01740 Erythranthe guttata HOM05D004902 ORTHO05D006603 9.7e-269 929.9 552 83.7
Lj1A876G36 Lonicera japonica HOM05D004902 ORTHO05D006603 2.2e-268 928.7 568 82.4
Sopen07g033000 Solanum pennellii HOM05D004902 ORTHO05D006603 2.2e-268 928.7 589 80.1
ClCG09G010930 Citrullus lanatus HOM05D004902 ORTHO05D006603 2.8e-268 928.3 578 80.8
Sc02g0003710 Simmondsia chinensis HOM05D004902 ORTHO05D006603 2.8e-268 928.3 553 83.5
FAN13G3021 Fragaria x ananassa HOM05D004902 ORTHO05D006603 4.8e-268 927.5 593 80.4
Solyc07g064810.3 Solanum lycopersicum HOM05D004902 ORTHO05D006603 4.8e-268 927.5 589 80.1
Thhalv10024744m.g Eutrema salsugineum HOM05D004902 ORTHO05D006603 3.1e-267 924.9 569 80.5
PGSC0003DMG400022211 Solanum tuberosum HOM05D004902 ORTHO05D006603 4.1e-267 924.5 589 79.5
ATR0736G184 Amborella trichopoda HOM05D004902 ORTHO05D006603 7.0e-267 923.7 576 81.6
MSTRG.14441 Avicennia marina HOM05D004902 ORTHO05D006603 7.0e-267 923.7 552 83.0
Lj4g0024994 Lotus japonicus HOM05D004902 ORTHO05D006603 7.0e-267 923.7 548 83.9
Nn8g38868 Nelumbo nucifera HOM05D004902 ORTHO05D006603 7.0e-267 923.7 535 85.6
FAN04G1963 Fragaria x ananassa HOM05D004902 ORTHO05D006603 1.2e-266 922.9 579 81.9
CARHR234510 Cardamine hirsuta HOM05D004902 ORTHO05D006603 3.4e-266 921.4 569 80.5
BcaB06g27301 Brassica carinata HOM05D004902 ORTHO05D006603 4.5e-266 921.0 569 80.1
Lalb_Chr10g0107081 Lupinus albus HOM05D004902 ORTHO05D006603 4.5e-266 921.0 546 84.4
Aa31LG3G11010 Aethionema arabicum HOM05D004902 ORTHO05D006603 1.0e-265 919.8 569 80.8
Thecc.09G123200 Theobroma cacao HOM05D004902 ORTHO05D006603 1.7e-265 919.1 576 80.7
Duzib264G0382 Durio zibethinus HOM05D004902 ORTHO05D006603 2.9e-265 918.3 569 81.5
Carub.0007s1395 Capsella rubella HOM05D004902 ORTHO05D006603 3.8e-265 917.9 569 80.3
Sp7g24850 Schrenkiella parvula HOM05D004902 ORTHO05D006603 5.0e-265 917.5 569 79.8
Potri.001G267400 Populus trichocarpa HOM05D004902 ORTHO05D006603 6.5e-265 917.1 590 79.2
CDE02G3624 Ceratophyllum demersum HOM05D004902 ORTHO05D006603 8.5e-265 916.8 561 80.7
C04p45770 Brassica napus HOM05D004902 ORTHO05D006603 1.4e-264 916.0 569 79.8
HanXRQChr05g0159411 Helianthus annuus HOM05D004902 ORTHO05D006603 1.9e-264 915.6 583 79.2
BolC4t26162H Brassica oleracea HOM05D004902 ORTHO05D006603 5.5e-264 914.1 571 79.7
Potri.009G061700 Populus trichocarpa HOM05D004902 ORTHO05D006603 7.2e-264 913.7 589 78.4
AL7G25950 Arabidopsis lyrata HOM05D004902 ORTHO05D006603 9.4e-264 913.3 569 80.0
A04p12110 Brassica napus HOM05D004902 ORTHO05D006603 1.2e-263 912.9 571 79.7
MSTRG.12985 Avicennia marina HOM05D004902 ORTHO05D006603 2.1e-263 912.1 570 80.0
C01p23080 Brassica napus HOM05D004902 ORTHO05D006603 2.1e-263 912.1 572 79.5
PGR083G1168 Punica granatum HOM05D004902 ORTHO05D006603 2.7e-263 911.8 589 78.9
Hund26666 Selenicereus undatus HOM05D004902 ORTHO05D006603 2.7e-263 911.8 580 79.3
Oeu062577.2 Olea europaea HOM05D004902 ORTHO05D006603 3.6e-263 911.4 564 82.8
HanXRQChr08g0233501 Helianthus annuus HOM05D004902 ORTHO05D006603 6.1e-263 910.6 570 81.2
AT4G26900 Arabidopsis thaliana HOM05D004902 ORTHO05D006603 1.8e-262 909.1 569 79.3
ECA246G3742 Erigeron canadensis HOM05D004902 ORTHO05D006603 2.3e-262 908.7 556 82.2
Lsat_1_v5_gn_5_3021 Lactuca sativa HOM05D004902 ORTHO05D006603 5.2e-262 907.5 554 81.4
BolC1t02242H Brassica oleracea HOM05D004902 ORTHO05D006603 3.3e-261 904.8 571 79.3
COL.COLO4_19537 Corchorus olitorius HOM05D004902 ORTHO05D006603 1.8e-259 899.0 569 79.3
EL10Ac1g01638 Beta vulgaris HOM05D004902 ORTHO05D006603 1.6e-258 896.0 564 79.3
BcaNung03568 Brassica carinata HOM05D004902 ORTHO05D006603 2.0e-258 895.6 572 78.5
BraA04t16876Z Brassica rapa HOM05D004902 ORTHO05D006603 2.1e-255 885.6 599 76.3
Haze_09705 Corylus avellana HOM05D004902 ORTHO05D006603 1.0e-254 883.2 569 78.7
PSO832G3378 Papaver somniferum HOM05D004902 ORTHO05D006603 2.3e-254 882.1 554 81.8
AUR62026758 Chenopodium quinoa HOM05D004902 ORTHO05D006603 3.0e-254 881.7 578 76.6
PSO210G2842 Papaver somniferum HOM05D004902 ORTHO05D006603 3.3e-253 878.2 554 81.4
Rhsim06G0219700 Rhododendron simsii HOM05D004902 ORTHO05D006603 7.5e-253 877.1 585 76.2
Oeu013136.2 Olea europaea HOM05D004902 ORTHO05D006603 4.8e-252 874.4 607 76.1
FAN08G0007 Fragaria x ananassa HOM05D004902 ORTHO05D006603 1.1e-251 873.2 569 79.1
HPP92_013494 Vanilla planifolia HOM05D004902 ORTHO05D006603 4.1e-251 871.3 539 78.1
HPP92_026047 Vanilla planifolia HOM05D004902 ORTHO05D006603 8.5e-249 863.6 532 78.8
Os03g0256400 Oryza sativa ssp. japonica HOM05D004902 ORTHO05D006603 1.5e-245 852.8 542 77.7
Gorai.011G209600 Gossypium raimondii HOM05D004902 ORTHO05D006603 2.2e-244 849.0 568 77.1
FvH4_5g29730 Fragaria vesca HOM05D004902 ORTHO05D006603 2.8e-244 848.6 479 87.3
Gohir.D10G186800 Gossypium hirsutum HOM05D004902 ORTHO05D006603 1.6e-242 842.8 568 76.6
vmacro02220 Vaccinium macrocarpon HOM05D004902 ORTHO05D006603 1.6e-242 842.8 591 74.5
Ah.13g076200 Amaranthus hybridus HOM05D004902 ORTHO05D006603 2.8e-239 832.0 553 76.3
Peaxi162Scf00235g00424 Petunia axillaris HOM05D004902 ORTHO05D006603 4.4e-237 824.7 576 74.8
AagrBONN_evm.TU.Sc2ySwM_117.3547 Anthoceros agrestis HOM05D004902 ORTHO05D006603 6.3e-236 820.8 574 71.4
Sabra16G0163900 Salix brachista HOM05D004902 ORTHO05D006603 1.8e-235 819.3 641 68.6
CsaV3_7G021940 Cucumis sativus L. HOM05D004902 ORTHO05D006603 7.8e-234 813.9 500 81.8
DCAR_022578 Daucus carota HOM05D004902 ORTHO05D006603 1.2e-231 806.6 587 72.2
Gohir.A10G179900 Gossypium hirsutum HOM05D004902 ORTHO05D006603 3.6e-231 805.1 584 72.6
Mapoly0071s0086 Marchantia polymorpha HOM05D004902 ORTHO05D006603 2.3e-230 802.4 557 71.8
CBR_g4356 Chara braunii HOM05D004902 ORTHO05D006603 7.3e-224 780.8 560 69.3
Nitab4.5_0022774g0010 Nicotiana tabacum HOM05D004902 ORTHO05D006603 9.5e-224 780.4 463 83.6
Pp3c1_20280 Physcomitrium patens HOM05D004902 ORTHO05D006603 1.1e-222 776.9 560 70.2
SMO119G0352 Selaginella moellendorffii HOM05D004902 ORTHO05D006603 3.4e-221 771.9 530 71.5
Hma1.2p1_0036F.1_g023430 Hydrangea macrophylla HOM05D004902 ORTHO05D006603 1.1e-216 756.9 447 83.7
unitig_85.g27329 Utricularia gibba HOM05D004902 ORTHO05D006603 5.6e-208 728.0 552 69.2
AUR62013514 Chenopodium quinoa HOM05D004902 ORTHO05D006603 9.5e-208 727.2 565 67.3
Nitab4.5_0013139g0010 Nicotiana tabacum HOM05D004902 ORTHO05D006603 5.8e-189 664.8 405 83.0
MCO02G311 Micromonas commoda HOM05D004902 ORTHO05D006603 2.2e-188 662.9 541 62.7
CAN.G677.16 Capsicum annuum HOM05D004902 ORTHO05D006603 1.1e-187 660.6 527 67.7
MD11G1214000 Malus domestica HOM05D004902 ORTHO05D006603 1.7e-164 583.6 341 86.2
PRCOL_00006765 Prasinoderma coloniale HOM05D004902 ORTHO05D006603 3.6e-162 575.9 510 59.2
HanXRQChr08g0233821 Helianthus annuus HOM05D004902 ORTHO05D006603 6.3e-159 565.1 410 72.0
A01p18110 Brassica napus HOM05D004902 ORTHO05D006603 8.2e-159 564.7 554 57.6
Zm00001eb011150 Zea mays HOM05D004902 ORTHO05D006603 2.4e-158 563.1 356 80.3
Cfa025092 Carpinus fangiana HOM05D004902 ORTHO05D006603 2.2e-156 556.6 544 54.4
Cre11.g481500 Chlamydomonas reinhardtii HOM05D004902 ORTHO05D006603 1.5e-136 490.7 557 50.3
Cpa.g.sc12.277 Carica papaya HOM05D004902 ORTHO05D006603 5.2e-129 465.7 257 88.3
Cpa.g.c34168 Carica papaya HOM05D004902 ORTHO05D006603 7.8e-93 345.5 210 78.6
MD11G1213900 Malus domestica HOM05D004902 ORTHO05D006603 2.1e-90 337.4 188 84.0
Lsat_1_v5_gn_3_2301 Lactuca sativa HOM05D004902 ORTHO05D006603 4.9e-71 273.1 405 45.2
Glyma.08G323300 Glycine max HOM05D004902 ORTHO05D006603 2.1e-69 267.7 208 65.9
Zm00001eb081410 Zea mays HOM05D004902 ORTHO05D006603 2.6e-56 224.2 198 58.1
RcHm_v2.0_Chr4g0412471 Rosa chinensis HOM05D004902 ORTHO05D006603 3.2e-46 190.7 153 66.7
SEGI_16435 Sequoiadendron giganteum HOM05D004902 ORTHO05D006603 3.6e-45 187.2 116 79.3
VMungo0540G1125 Vigna mungo HOM05D004902 ORTHO05D006603 4.8e-42 176.8 141 69.5
SEGI_31768 Sequoiadendron giganteum HOM05D004902 ORTHO05D006603 3.2e-38 164.1 118 66.1
BraA01t01766Z Brassica rapa HOM05D004902 ORTHO05D006603 7.9e-37 159.5 102 77.5
Aqoxy84s005 Aquilegia oxysepala HOM05D004902 ORTHO05D038539 1.2e-29 135.6 312 31.4
Lsat_1_v5_gn_0_44000 Lactuca sativa HOM05D004902 ORTHO05D038539 8.8e-28 129.4 312 33.3
Glyma.08G319400 Glycine max HOM05D004902 ORTHO05D029739 1.8e-25 121.7 76 81.6
BcaNung03560 Brassica carinata HOM05D004902 ORTHO05D006603 3.0e-20 104.4 57 84.2
FvH4_6g25500 Fragaria vesca HOM05D000003 ORTHO05D000007 4.4e-19 100.5 58 82.8
Ah.01g018890 Amaranthus hybridus HOM05D004902 ORTHO05D006603 3.6e-13 80.9 121 46.3
TPR.G39977 Trifolium pratense HOM05D004902 ORTHO05D006603 6.1e-13 80.1 42 85.7
SEGI_35364 Sequoiadendron giganteum HOM05D004902 ORTHO05D025756 8.8e-12 76.3 45 71.1
Lsat_1_v5_gn_3_69341 Lactuca sativa HOM05D004902 ORTHO05D006603 2.6e-11 74.7 126 41.3
Lsat_1_v5_gn_4_11281 Lactuca sativa HOM05D004902 ORTHO05D006603 7.5e-11 73.2 107 44.9
BcaNung03565 Brassica carinata HOM05D004902 ORTHO05D006603 3.7e-10 70.9 70 57.1
TWI38G0888 Tripterygium wilfordii HOM05D004902 ORTHO05D029739 5.4e-09 67.0 52 71.2
HanXRQChr08g0233831 Helianthus annuus HOM05D004902 ORTHO05D006603 7.0e-09 66.6 42 76.2
RcHm_v2.0_Chr5g0040621 Rosa chinensis HOM05D004902 ORTHO05D006603 5.9e-08 63.5 37 83.8
GSVIVG01021644001 Vitis vinifera HOM05D004902 ORTHO05D024725 3.8e-07 60.8 36 69.4
Lsat_1_v5_gn_0_720 Lactuca sativa HOM05D004902 ORTHO05D029739 8.6e-07 59.7 55 58.2


User provided reference genes

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