Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G00265 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 1.3e-61 239.6 120 100.0
TAR365G0320 Trochodendron aralioides HOM05D003940 ORTHO05D004461 2.2e-26 122.5 120 58.3
TAR636G1753 Trochodendron aralioides HOM05D003940 ORTHO05D004461 5.0e-26 121.3 120 56.7
TAR362G0514 Trochodendron aralioides HOM05D003940 ORTHO05D004461 6.1e-24 114.4 120 55.8
PSO210G0601 Papaver somniferum HOM05D003940 ORTHO05D004461 2.2e-21 105.9 115 53.9
Nn1g00062 Nelumbo nucifera HOM05D003940 ORTHO05D004461 6.3e-21 104.4 128 50.0
Nn1g02702 Nelumbo nucifera HOM05D003940 ORTHO05D004461 6.3e-21 104.4 128 50.0
TAR602G0001 Trochodendron aralioides HOM05D003940 ORTHO05D004461 8.3e-21 104.0 122 50.0
GSVIVG01027728001 Vitis vinifera HOM05D000515 ORTHO05D003188 8.5e-18 94.0 106 50.0
CSS0017531 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 9.4e-17 90.5 100 54.0
Dinv44656 Davidia involucrata HOM05D003940 ORTHO05D004461 1.6e-16 89.7 116 50.9
MBI18_g43342_MAGBIO Magnolia biondii HOM05D003940 ORTHO05D004461 4.7e-16 88.2 107 44.9
Manes.15G038200 Manihot esculenta HOM05D003940 ORTHO05D004461 4.0e-15 85.1 95 52.6
Hma1.2p1_0986F.1_g244370 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 5.2e-15 84.7 96 49.0
Cpa.g.sc44.90 Carica papaya HOM05D003940 ORTHO05D004461 8.8e-15 84.0 106 46.2
Duzib212G0271 Durio zibethinus HOM05D003940 ORTHO05D004461 8.8e-15 84.0 101 49.5
Hma1.2p1_0310F.1_g120730 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 8.8e-15 84.0 103 48.5
Solyc06g053700.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 1.5e-14 83.2 110 48.2
Sopen06g018810 Solanum pennellii HOM05D003940 ORTHO05D004461 1.5e-14 83.2 110 48.2
PGR031G1035 Punica granatum HOM05D003940 ORTHO05D004461 2.0e-14 82.8 97 48.5
PGSC0003DMG400017255 Solanum tuberosum HOM05D003940 ORTHO05D004461 2.0e-14 82.8 108 46.3
Actinidia04462 Actinidia chinensis HOM05D003940 ORTHO05D004461 2.6e-14 82.4 96 50.0
A10p02740 Brassica napus HOM05D003940 ORTHO05D004461 2.6e-14 82.4 93 49.5
BraA10t42542Z Brassica rapa HOM05D003940 ORTHO05D004461 2.6e-14 82.4 93 49.5
Nitab4.5_0000342g0180 Nicotiana tabacum HOM05D003940 ORTHO05D004461 2.6e-14 82.4 115 47.0
Solyc09g089650.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 2.6e-14 82.4 107 43.9
COL.COLO4_15828 Corchorus olitorius HOM05D003940 ORTHO05D004461 3.4e-14 82.0 116 44.8
Nitab4.5_0007234g0020 Nicotiana tabacum HOM05D003940 ORTHO05D004461 3.4e-14 82.0 111 46.8
Sopen09g032590 Solanum pennellii HOM05D003940 ORTHO05D004461 4.4e-14 81.6 107 43.9
CSS0034657 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 5.7e-14 81.3 96 49.0
Thecc.04G250000 Theobroma cacao HOM05D003940 ORTHO05D004461 5.7e-14 81.3 116 43.1
Duzib151G0370 Durio zibethinus HOM05D003940 ORTHO05D004461 7.5e-14 80.9 118 43.2
Aa31LG8G9650 Aethionema arabicum HOM05D003940 ORTHO05D004461 9.8e-14 80.5 117 47.0
Aqoxy2G03616 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 9.8e-14 80.5 115 43.5
Sed0016632 Sechium edule HOM05D003940 ORTHO05D004461 9.8e-14 80.5 119 43.7
AL3G37790 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 1.3e-13 80.1 106 45.3
C05p02510 Brassica napus HOM05D003940 ORTHO05D004461 1.3e-13 80.1 93 48.4
CiPaw.01G188000 Carya illinoinensis HOM05D003940 ORTHO05D004461 1.3e-13 80.1 117 44.4
Nn3g19606 Nelumbo nucifera HOM05D003940 ORTHO05D004461 1.3e-13 80.1 125 43.2
BolC5t29030H Brassica oleracea HOM05D003940 ORTHO05D004461 1.7e-13 79.7 93 48.4
PGSC0003DMG400016324 Solanum tuberosum HOM05D003940 ORTHO05D004461 2.2e-13 79.3 110 46.4
vmacro08448 Vaccinium macrocarpon HOM05D003940 ORTHO05D004461 2.2e-13 79.3 97 45.4
BcaC05g24452 Brassica carinata HOM05D003940 ORTHO05D004461 2.8e-13 79.0 93 47.3
CANSAT78G1835 Cannabis sativa HOM05D003940 ORTHO05D004461 2.8e-13 79.0 110 46.4
Rhsim04G0188200 Rhododendron simsii HOM05D003940 ORTHO05D004461 2.8e-13 79.0 97 50.5
Cc03_g05120 Coffea canephora HOM05D003940 ORTHO05D004461 3.7e-13 78.6 101 47.5
Carub.0001s0351 Capsella rubella HOM05D003940 ORTHO05D004461 4.8e-13 78.2 93 48.4
ClCG06G006840 Citrullus lanatus HOM05D003940 ORTHO05D004461 4.8e-13 78.2 97 47.4
Lalb_Chr21g0312371 Lupinus albus HOM05D003940 ORTHO05D004461 4.8e-13 78.2 104 49.0
AT3G23170 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 6.3e-13 77.8 106 44.3
Oeu025569.1 Olea europaea HOM05D003940 ORTHO05D004461 6.3e-13 77.8 113 46.0
Sp1g03140 Schrenkiella parvula HOM05D003940 ORTHO05D004461 6.3e-13 77.8 93 49.5
Sp3g20820 Schrenkiella parvula HOM05D003940 ORTHO05D004461 6.3e-13 77.8 115 44.3
Gohir.A09G225100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 8.3e-13 77.4 101 44.6
Oeu063884.1 Olea europaea HOM05D003940 ORTHO05D004461 8.3e-13 77.4 113 46.9
Sc19g0003500 Simmondsia chinensis HOM05D003940 ORTHO05D004461 8.3e-13 77.4 100 50.0
MSTRG.9915 Avicennia marina HOM05D003940 ORTHO05D004461 1.4e-12 76.6 113 46.0
Gorai.006G070500 Gossypium raimondii HOM05D003940 ORTHO05D004461 1.4e-12 76.6 116 44.8
RcHm_v2.0_Chr4g0391391 Rosa chinensis HOM05D003940 ORTHO05D004461 1.4e-12 76.6 111 44.1
Atru.chr4.2138 Acer truncatum HOM05D003940 ORTHO05D004461 1.8e-12 76.3 119 42.0
AUR62002262 Chenopodium quinoa HOM05D003940 ORTHO05D004461 1.8e-12 76.3 104 46.2
Gohir.D09G226800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.8e-12 76.3 102 45.1
Gorai.006G248700 Gossypium raimondii HOM05D003940 ORTHO05D004461 1.8e-12 76.3 101 43.6
Peaxi162Scf00024g01711 Petunia axillaris HOM05D003940 ORTHO05D004461 1.8e-12 76.3 109 45.9
Potri.008G164801 Populus trichocarpa HOM05D003940 ORTHO05D004461 2.4e-12 75.9 98 51.0
Potri.010G073900 Populus trichocarpa HOM05D003940 ORTHO05D004461 2.4e-12 75.9 99 45.5
SalBow2G1766 Salvia bowleyana HOM05D003940 ORTHO05D004461 2.4e-12 75.9 98 45.9
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 2.4e-12 75.9 109 48.6
Gohir.D09G056900 Gossypium hirsutum HOM05D003940 ORTHO05D004461 3.1e-12 75.5 116 44.8
Cfa008351 Carpinus fangiana HOM05D003940 ORTHO05D004461 4.1e-12 75.1 115 46.1
FvH4_4g03100 Fragaria vesca HOM05D003940 ORTHO05D004461 4.1e-12 75.1 119 43.7
MELO3C022975.2 Cucumis melo HOM05D003940 ORTHO05D004461 5.4e-12 74.7 134 38.8
Thhalv10021654m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 5.4e-12 74.7 107 45.8
Sc25g0004050 Simmondsia chinensis HOM05D003940 ORTHO05D004461 5.4e-12 74.7 103 44.7
TWI53G1738 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 5.4e-12 74.7 102 49.0
AT1G04330 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 7.0e-12 74.3 101 42.6
CsaV3_2G012950 Cucumis sativus L. HOM05D003940 ORTHO05D004461 7.0e-12 74.3 109 44.0
Lj5g0009696 Lotus japonicus HOM05D003940 ORTHO05D004461 7.0e-12 74.3 101 49.5
TWI73G0411 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 7.0e-12 74.3 103 46.6
AL1G13930 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 9.1e-12 73.9 93 41.9
Ciclev10006290m.g Citrus clementina HOM05D003940 ORTHO05D004461 9.1e-12 73.9 108 45.4
FAN12G3937 Fragaria x ananassa HOM05D003940 ORTHO05D004461 9.1e-12 73.9 119 44.5
FAN17G2041 Fragaria x ananassa HOM05D003940 ORTHO05D004461 9.1e-12 73.9 115 45.2
THA.LOC104822808 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 9.1e-12 73.9 111 42.3
TWI09G0780 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 9.1e-12 73.9 100 46.0
Migut.G00452 Erythranthe guttata HOM05D003940 ORTHO05D004461 1.2e-11 73.6 92 51.1
BcaB06g26449 Brassica carinata HOM05D003940 ORTHO05D004461 1.6e-11 73.2 110 43.6
Carub.0003s2339 Capsella rubella HOM05D003940 ORTHO05D004461 1.6e-11 73.2 110 44.5
HanXRQChr13g0425481 Helianthus annuus HOM05D003940 ORTHO05D004461 1.6e-11 73.2 114 47.4
Prupe.1G034700 Prunus persica HOM05D003940 ORTHO05D004461 1.6e-11 73.2 103 45.6
TWI53G1893 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 1.6e-11 73.2 102 49.0
Psat6g132880 Pisum sativum HOM05D003940 ORTHO05D004461 2.0e-11 72.8 99 49.5
BcaC07g42173 Brassica carinata HOM05D003940 ORTHO05D004461 2.7e-11 72.4 100 40.0
BcaC07g42193 Brassica carinata HOM05D003940 ORTHO05D004461 2.7e-11 72.4 100 40.0
CARHR003650 Cardamine hirsuta HOM05D003940 ORTHO05D004461 2.7e-11 72.4 92 44.6
Migut.N00250 Erythranthe guttata HOM05D003940 ORTHO05D004461 2.7e-11 72.4 102 50.0
Gohir.D02G043800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 2.7e-11 72.4 111 42.3
FAN22G2069 Fragaria x ananassa HOM05D003940 ORTHO05D004461 3.5e-11 72.0 115 43.5
AUR62015478 Chenopodium quinoa HOM05D000816 ORTHO05D005265 4.5e-11 71.6 99 49.5
QL06p016655 Quercus lobata HOM05D003940 ORTHO05D004461 4.5e-11 71.6 113 45.1
Migut.G00451 Erythranthe guttata HOM05D003940 ORTHO05D004461 5.9e-11 71.2 94 47.9
Gorai.005G048200 Gossypium raimondii HOM05D003940 ORTHO05D004461 5.9e-11 71.2 111 41.4
Lsat_1_v5_gn_3_122140 Lactuca sativa HOM05D003940 ORTHO05D004461 5.9e-11 71.2 101 49.5
Peaxi162Scf00325g00012 Petunia axillaris HOM05D003940 ORTHO05D004461 5.9e-11 71.2 94 45.7
Peaxi162Scf00325g00015 Petunia axillaris HOM05D003940 ORTHO05D004461 5.9e-11 71.2 94 45.7
SalBow3G4424 Salvia bowleyana HOM05D003940 ORTHO05D004461 5.9e-11 71.2 106 44.3
SHI00703 Sapria himalayana HOM05D003940 ORTHO05D004461 5.9e-11 71.2 99 47.5
A07p09330 Brassica napus HOM05D003940 ORTHO05D004461 7.7e-11 70.9 107 45.8
Ca_09815_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 7.7e-11 70.9 108 46.3
Thhalv10009178m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 7.7e-11 70.9 93 40.9
Gohir.D10G154400 Gossypium hirsutum HOM05D003940 ORTHO05D004461 7.7e-11 70.9 113 43.4
Gorai.011G172300 Gossypium raimondii HOM05D003940 ORTHO05D004461 7.7e-11 70.9 113 43.4
PGR004G1022 Punica granatum HOM05D003940 ORTHO05D004461 7.7e-11 70.9 78 50.0
SGA_v2.0_scaffold101G29832 Striga asiatica HOM05D003940 ORTHO05D004461 7.7e-11 70.9 96 47.9
CiPaw.02G114800 Carya illinoinensis HOM05D003940 ORTHO05D004461 1.0e-10 70.5 112 41.1
Glyma.10G188200 Glycine max HOM05D003940 ORTHO05D004461 1.0e-10 70.5 104 43.3
THA.LOC104808609 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 1.0e-10 70.5 113 38.9
BolC7t41935H Brassica oleracea HOM05D003940 ORTHO05D004461 1.3e-10 70.1 110 42.7
BraA07t28731Z Brassica rapa HOM05D003940 ORTHO05D004461 1.3e-10 70.1 107 45.8
CARHR220660 Cardamine hirsuta HOM05D003940 ORTHO05D004461 1.3e-10 70.1 116 38.8
CAN.G738.11 Capsicum annuum HOM05D003940 ORTHO05D004461 1.7e-10 69.7 101 41.6
Haze_11334 Corylus avellana HOM05D003940 ORTHO05D004461 1.7e-10 69.7 116 44.8
Gohir.A09G057700 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.7e-10 69.7 104 44.2
Lsat_1_v5_gn_5_72560 Lactuca sativa HOM05D003940 ORTHO05D004461 1.7e-10 69.7 94 44.7
Glyma.20G202600 Glycine max HOM05D003940 ORTHO05D004461 2.3e-10 69.3 107 41.1
Gohir.A02G037100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 2.3e-10 69.3 111 41.4
Lalb_Chr19g0128361 Lupinus albus HOM05D003940 ORTHO05D004461 2.3e-10 69.3 108 42.6
Sabra10G0034600 Salix brachista HOM05D003940 ORTHO05D004461 2.3e-10 69.3 114 41.2
EL10Ac3g05913 Beta vulgaris HOM05D003940 ORTHO05D004461 2.9e-10 68.9 104 43.3
DCAR_027292 Daucus carota HOM05D003940 ORTHO05D004461 2.9e-10 68.9 104 44.2
DCAR_027293 Daucus carota HOM05D003940 ORTHO05D004461 2.9e-10 68.9 104 44.2
CAN.G793.6 Capsicum annuum HOM05D003940 ORTHO05D004461 3.8e-10 68.6 103 43.7
Eucgr.H03139 Eucalyptus grandis HOM05D003940 ORTHO05D004461 3.8e-10 68.6 104 44.2
C07p14380 Brassica napus HOM05D003940 ORTHO05D004461 6.6e-10 67.8 110 41.8
HanXRQChr03g0092241 Helianthus annuus HOM05D003940 ORTHO05D004461 6.6e-10 67.8 99 46.5
Phvul.007G129450 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 6.6e-10 67.8 104 43.3
AT4G14450 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 8.6e-10 67.4 121 37.2
CARHR099110 Cardamine hirsuta HOM05D003940 ORTHO05D004461 8.6e-10 67.4 102 42.2
Gohir.A10G112500 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.1e-09 67.0 113 42.5
Psat6g138240 Pisum sativum HOM05D003940 ORTHO05D004461 1.5e-09 66.6 114 38.6
Thhalv10027546m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 4.2e-09 65.1 122 36.9
TPR.G15869 Trifolium pratense HOM05D003940 ORTHO05D004461 4.2e-09 65.1 117 40.2
Sc13g0005150 Simmondsia chinensis HOM05D003940 ORTHO05D004461 5.5e-09 64.7 97 41.2
BcaB02g08606 Brassica carinata HOM05D003940 ORTHO05D004461 7.2e-09 64.3 115 35.7
A04p07580 Brassica napus HOM05D003940 ORTHO05D004461 1.2e-08 63.5 115 35.7
BraA04t16449Z Brassica rapa HOM05D003940 ORTHO05D004461 1.6e-08 63.2 115 35.7
MD13G1210200 Malus domestica HOM05D003940 ORTHO05D004461 1.6e-08 63.2 110 42.7
ECA233G6082 Erigeron canadensis HOM05D003940 ORTHO05D004461 2.1e-08 62.8 97 43.3
ATR0680G398 Amborella trichopoda HOM05D003940 ORTHO05D004461 2.8e-08 62.4 121 36.4
A03p43180 Brassica napus HOM05D003940 ORTHO05D004461 3.6e-08 62.0 120 39.2
THA.LOC104822248 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 4.7e-08 61.6 110 39.1
BcaC02g09310 Brassica carinata HOM05D003940 ORTHO05D004461 6.1e-08 61.2 115 34.8
C04p41270 Brassica napus HOM05D003940 ORTHO05D004461 6.1e-08 61.2 115 34.8
BolC4t25705H Brassica oleracea HOM05D003940 ORTHO05D004461 6.1e-08 61.2 115 34.8
Medtr1g073910 Medicago truncatula HOM05D003940 ORTHO05D004461 6.1e-08 61.2 95 47.4
Sed0008236 Sechium edule HOM05D003940 ORTHO05D004461 6.1e-08 61.2 95 40.0
Aa31LG9G2850 Aethionema arabicum HOM05D003940 ORTHO05D004461 1.0e-07 60.5 105 37.1
BraA03t13459Z Brassica rapa HOM05D003940 ORTHO05D004461 1.4e-07 60.1 121 38.0
Sp7g12530 Schrenkiella parvula HOM05D003940 ORTHO05D004461 1.8e-07 59.7 115 38.3
AL7G41690 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 2.3e-07 59.3 115 34.8
Glyma.10G008021 Glycine max HOM05D003940 ORTHO05D004461 2.3e-07 59.3 100 39.0
HPP92_022626 Vanilla planifolia HOM05D027912 ORTHO05D004461 2.3e-07 59.3 103 37.9
CsaV3_3G012380 Cucumis sativus L. HOM05D000244 ORTHO05D000179 3.0e-07 58.9 99 41.4
MD16G1213100 Malus domestica HOM05D003940 ORTHO05D004461 4.0e-07 58.5 117 40.2
Lj6g0004880 Lotus japonicus HOM05D003940 ORTHO05D004461 8.9e-07 57.4 99 39.4
CDE05G2198 Ceratophyllum demersum HOM05D000017 ORTHO05D000013 1.2e-06 57.0 85 43.5
CiPaw.13G089400 Carya illinoinensis HOM05D008943 ORTHO05D010477 2.0e-06 56.2 115 35.7
Sed0000021 Sechium edule HOM05D003940 ORTHO05D004461 2.0e-06 56.2 104 39.4
unitig_32.g11714 Utricularia gibba HOM05D003940 ORTHO05D004461 2.6e-06 55.8 104 40.4
ClCG05G004480 Citrullus lanatus HOM05D003940 ORTHO05D004461 3.4e-06 55.5 102 39.2
HPP92_025972 Vanilla planifolia HOM05D027912 ORTHO05D004461 3.4e-06 55.5 104 36.5
HPP92_008406 Vanilla planifolia HOM05D027912 ORTHO05D004461 5.7e-06 54.7 101 37.6
Carub.0007s2777 Capsella rubella HOM05D003940 ORTHO05D004461 7.5e-06 54.3 115 28.7
PGSC0003DMG400013448 Solanum tuberosum HOM05D003940 ORTHO05D004461 9.8e-06 53.9 58 58.6


User provided reference genes

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