Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G00175 Aquilegia oxysepala HOM05D004054 ORTHO05D004945 0.0e+00 1651.7 849 100.0
TAR362G0462 Trochodendron aralioides HOM05D004054 ORTHO05D004945 0.0e+00 1156.0 880 71.6
MBI11_g00106_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 7.5e-310 1067.0 879 65.9
PSO832G3945 Papaver somniferum HOM05D004054 ORTHO05D004945 3.8e-306 1054.7 876 65.5
MBI17_g39912_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 1.8e-300 1035.8 856 65.2
Actinidia05393 Actinidia chinensis HOM05D004054 ORTHO05D004945 1.2e-296 1023.1 871 64.5
PSO764G0096 Papaver somniferum HOM05D004054 ORTHO05D004945 1.9e-292 1009.2 874 63.3
QL03p065666 Quercus lobata HOM05D004054 ORTHO05D004945 5.6e-289 997.7 872 63.2
Thecc.02G355300 Theobroma cacao HOM05D004054 ORTHO05D004945 6.2e-288 994.2 873 63.1
Cfa009037 Carpinus fangiana HOM05D004054 ORTHO05D004945 5.2e-287 991.1 878 63.7
Rhsim01G0215700 Rhododendron simsii HOM05D004054 ORTHO05D004945 5.8e-286 987.6 883 62.6
Gohir.A13G052300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 1.3e-285 986.5 877 62.9
Gorai.013G077900 Gossypium raimondii HOM05D004054 ORTHO05D004945 1.0e-282 976.9 877 62.5
Ciclev10030693m.g Citrus clementina HOM05D004054 ORTHO05D004945 1.2e-280 969.9 881 62.1
Gohir.D13G068400 Gossypium hirsutum HOM05D004054 ORTHO05D004945 1.5e-278 963.0 877 61.8
Duzib268G1532 Durio zibethinus HOM05D004054 ORTHO05D004945 5.8e-278 961.1 879 61.4
MD13G1079000 Malus domestica HOM05D004054 ORTHO05D004945 5.8e-278 961.1 859 61.6
GSVIVG01036940001 Vitis vinifera HOM05D004054 ORTHO05D004945 1.4e-276 956.4 866 61.9
Haze_12066 Corylus avellana HOM05D004054 ORTHO05D004945 1.7e-274 949.5 982 56.9
COL.COLO4_07923 Corchorus olitorius HOM05D004054 ORTHO05D004945 6.6e-274 947.6 875 61.3
CSS0048330 Camellia sinensis var. sinensis HOM05D004054 ORTHO05D004945 1.4e-268 929.9 860 60.8
FAN12G3951 Fragaria x ananassa HOM05D004054 ORTHO05D004945 4.2e-268 928.3 874 60.3
Prupe.1G267800 Prunus persica HOM05D004054 ORTHO05D004945 5.4e-268 927.9 877 60.8
GSVIVG01020074001 Vitis vinifera HOM05D004054 ORTHO05D004945 2.1e-267 926.0 878 59.9
FvH4_4g31960 Fragaria vesca HOM05D004054 ORTHO05D004945 1.3e-266 923.3 875 60.1
FAN22G1878 Fragaria x ananassa HOM05D004054 ORTHO05D004945 3.9e-266 921.8 881 59.8
Peaxi162Scf00209g00326 Petunia axillaris HOM05D004054 ORTHO05D004945 9.6e-265 917.1 896 56.8
RcHm_v2.0_Chr4g0440641 Rosa chinensis HOM05D004054 ORTHO05D004945 9.6e-265 917.1 879 59.4
TWI36G0714 Tripterygium wilfordii HOM05D004054 ORTHO05D004945 1.3e-264 916.8 872 59.3
RcHm_v2.0_Chr1g0353921 Rosa chinensis HOM05D004054 ORTHO05D004945 1.6e-264 916.4 841 61.4
ClCG05G024580 Citrullus lanatus HOM05D004054 ORTHO05D004945 6.2e-264 914.4 885 57.9
RcHm_v2.0_Chr1g0331881 Rosa chinensis HOM05D004054 ORTHO05D004945 8.1e-264 914.1 875 59.5
FAN17G1509 Fragaria x ananassa HOM05D004054 ORTHO05D004945 9.0e-263 910.6 875 59.7
CsaV3_5G032370 Cucumis sativus L. HOM05D004054 ORTHO05D004945 1.2e-262 910.2 867 58.8
PGR102G2139 Punica granatum HOM05D004054 ORTHO05D004945 1.3e-261 906.7 882 58.0
FAN07G1439 Fragaria x ananassa HOM05D004054 ORTHO05D004945 8.4e-261 904.0 886 58.8
vmacro07429 Vaccinium macrocarpon HOM05D004054 ORTHO05D004945 7.1e-260 901.0 951 56.7
Sed0026408 Sechium edule HOM05D004054 ORTHO05D004945 2.1e-259 899.4 867 57.1
MD16G1078700 Malus domestica HOM05D004054 ORTHO05D004945 2.3e-258 896.0 777 63.7
Hma1.2p1_1545F.1_g289900 Hydrangea macrophylla HOM05D004054 ORTHO05D004945 3.9e-258 895.2 761 65.4
Sopen05g002990 Solanum pennellii HOM05D004054 ORTHO05D004945 1.6e-256 889.8 867 57.6
Lsat_1_v5_gn_8_54080 Lactuca sativa HOM05D004054 ORTHO05D004945 3.7e-256 888.6 888 57.4
Duzib248G1634 Durio zibethinus HOM05D004054 ORTHO05D004945 6.2e-256 887.9 872 58.8
Atru.chr11.1851 Acer truncatum HOM05D004054 ORTHO05D004945 8.1e-256 887.5 880 58.5
Eucgr.B03410 Eucalyptus grandis HOM05D004054 ORTHO05D004945 1.4e-255 886.7 868 57.0
Potri.010G033900 Populus trichocarpa HOM05D004054 ORTHO05D004945 1.4e-255 886.7 870 59.4
Nitab4.5_0009649g0020 Nicotiana tabacum HOM05D004054 ORTHO05D004945 5.3e-255 884.8 851 58.2
Gorai.008G182900 Gossypium raimondii HOM05D004054 ORTHO05D004945 4.9e-253 878.2 879 57.5
Cc11_g13490 Coffea canephora HOM05D004054 ORTHO05D004945 7.1e-252 874.4 880 56.4
Nn3g19739 Nelumbo nucifera HOM05D004054 ORTHO05D004945 7.9e-251 870.9 735 64.5
Sc11g0001680 Simmondsia chinensis HOM05D004054 ORTHO05D004945 2.3e-250 869.4 875 56.6
Gohir.D12G170300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 1.3e-248 863.6 849 58.1
Carub.0003s1763 Capsella rubella HOM05D004054 ORTHO05D004945 1.6e-248 863.2 870 57.0
MSTRG.671 Avicennia marina HOM05D004054 ORTHO05D004945 2.1e-248 862.8 873 55.9
MELO3C012068.2 Cucumis melo HOM05D004054 ORTHO05D004945 2.1e-248 862.8 868 56.5
Nitab4.5_0008717g0030 Nicotiana tabacum HOM05D004054 ORTHO05D004945 4.8e-248 861.7 852 57.4
Lj4g0012636 Lotus japonicus HOM05D004054 ORTHO05D004945 1.1e-247 860.5 883 57.0
Dinv24955 Davidia involucrata HOM05D004054 ORTHO05D004945 1.8e-247 859.8 728 65.5
Phvul.003G069800 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 2.4e-247 859.4 888 56.6
DCAR_027382 Daucus carota HOM05D004054 ORTHO05D004945 3.1e-247 859.0 876 56.2
ECA247G4086 Erigeron canadensis HOM05D004054 ORTHO05D004945 1.0e-245 854.0 869 55.8
VMungo0251G1664 Vigna mungo HOM05D004054 ORTHO05D004945 1.3e-245 853.6 887 56.0
Sabra10G0030700 Salix brachista HOM05D004054 ORTHO05D004945 2.9e-245 852.4 930 55.7
Thhalv10020058m.g Eutrema salsugineum HOM05D004054 ORTHO05D004945 3.8e-245 852.0 869 56.5
Glyma.18G126000 Glycine max HOM05D004054 ORTHO05D004945 1.1e-244 850.5 883 56.2
Ca_22853_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 2.5e-244 849.4 882 56.8
Glyma.08G296300 Glycine max HOM05D004054 ORTHO05D004945 2.5e-244 849.4 878 56.2
Migut.L01344 Erythranthe guttata HOM05D004054 ORTHO05D004945 7.9e-243 844.3 880 56.4
Medtr8g469270 Medicago truncatula HOM05D004054 ORTHO05D004945 1.8e-242 843.2 891 56.1
AT3G17900 Arabidopsis thaliana HOM05D004054 ORTHO05D004945 8.7e-242 840.9 869 56.0
AL3G31070 Arabidopsis lyrata HOM05D004054 ORTHO05D004945 2.5e-241 839.3 869 55.8
ATR0564G248 Amborella trichopoda HOM05D004054 ORTHO05D004945 4.3e-241 838.6 877 55.9
Lalb_Chr16g0392581 Lupinus albus HOM05D004054 ORTHO05D004945 5.7e-241 838.2 894 55.3
Oeu011693.1 Olea europaea HOM05D004054 ORTHO05D004945 6.3e-240 834.7 781 59.2
Sp3g16020 Schrenkiella parvula HOM05D004054 ORTHO05D004945 2.4e-239 832.8 877 55.3
TPR.G33257 Trifolium pratense HOM05D004054 ORTHO05D004945 9.0e-239 830.9 883 55.4
arahy.Tifrunner.gnm1.ann1.K6PP8H Arachis hypogaea HOM05D004054 ORTHO05D004945 1.2e-238 830.5 874 55.5
CARHR093230 Cardamine hirsuta HOM05D004054 ORTHO05D004945 3.4e-238 828.9 864 55.2
SalBow2G0733 Salvia bowleyana HOM05D004054 ORTHO05D004945 1.0e-237 827.4 966 51.6
Hund25271 Selenicereus undatus HOM05D004054 ORTHO05D004945 3.8e-237 825.5 849 55.6
AUR62026447 Chenopodium quinoa HOM05D004054 ORTHO05D004945 5.5e-236 821.6 870 55.5
Oeu028539.1 Olea europaea HOM05D004054 ORTHO05D004945 9.4e-236 820.8 912 53.7
SGA_v2.0_scaffold302G47866 Striga asiatica HOM05D004054 ORTHO05D004945 1.2e-235 820.5 885 54.5
THA.LOC104820344 Tarenaya hassleriana HOM05D004054 ORTHO05D004945 1.8e-234 816.6 868 55.1
BcaB04g20809 Brassica carinata HOM05D004054 ORTHO05D004945 9.7e-233 810.8 866 54.8
CDE09G0195 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 1.7e-232 810.1 875 53.1
HPP92_011033 Vanilla planifolia HOM05D004054 ORTHO05D004945 1.1e-231 807.4 871 54.2
HanXRQChr12g0369801 Helianthus annuus HOM05D004054 ORTHO05D004945 5.3e-231 805.1 873 53.8
Aa31LG8G4770 Aethionema arabicum HOM05D004054 ORTHO05D004945 4.5e-230 802.0 923 51.8
AUR62026254 Chenopodium quinoa HOM05D004054 ORTHO05D004945 3.8e-229 798.9 883 54.0
Manes.05G096500 Manihot esculenta HOM05D004054 ORTHO05D004945 5.0e-229 798.5 755 61.7
BraA03t13202Z Brassica rapa HOM05D004054 ORTHO05D004945 1.6e-227 793.5 871 54.4
A01p36490 Brassica napus HOM05D004054 ORTHO05D004945 3.6e-227 792.3 856 54.3
Glyma.02G021900 Glycine max HOM05D004054 ORTHO05D004945 3.6e-227 792.3 869 54.0
Psat4g132120 Pisum sativum HOM05D004054 ORTHO05D004945 1.8e-226 790.0 883 53.6
SalBow2G2854 Salvia bowleyana HOM05D004054 ORTHO05D004945 3.9e-226 788.9 1046 47.4
C03p49280 Brassica napus HOM05D004054 ORTHO05D004945 3.3e-225 785.8 865 54.5
C01p46250 Brassica napus HOM05D004054 ORTHO05D004945 5.3e-223 778.5 865 54.0
BcaC09g48754 Brassica carinata HOM05D004054 ORTHO05D004945 9.1e-223 777.7 868 54.0
Psat2g124400 Pisum sativum HOM05D004054 ORTHO05D004945 2.6e-222 776.2 870 53.6
BolC1t04586H Brassica oleracea HOM05D004054 ORTHO05D004945 7.7e-222 774.6 865 53.9
BraA01t03713Z Brassica rapa HOM05D004054 ORTHO05D004945 1.7e-221 773.5 857 53.8
BolC3t17216H Brassica oleracea HOM05D004054 ORTHO05D004945 2.2e-221 773.1 862 54.3
Lalb_Chr09g0335271 Lupinus albus HOM05D004054 ORTHO05D004945 8.5e-221 771.2 874 53.3
Ca_04741_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 2.6e-217 759.6 850 53.9
BcaB04g18970 Brassica carinata HOM05D004054 ORTHO05D004945 1.6e-214 750.4 871 52.9
Medtr5g038440 Medicago truncatula HOM05D004054 ORTHO05D004945 2.0e-209 733.4 877 52.0
Hund05913 Selenicereus undatus HOM05D004054 ORTHO05D004945 4.8e-208 728.8 825 52.0
Lalb_Chr17g0340361 Lupinus albus HOM05D004054 ORTHO05D004945 3.1e-207 726.1 799 52.7
BcaC01g03722 Brassica carinata HOM05D004054 ORTHO05D004945 7.0e-207 724.9 860 52.2
Zm00001eb409770 Zea mays HOM05D004054 ORTHO05D004945 1.6e-206 723.8 875 50.9
TPR.G13762 Trifolium pratense HOM05D004054 ORTHO05D004945 1.9e-204 716.8 804 53.5
Solyc05g007030.4 Solanum lycopersicum HOM05D004054 ORTHO05D004945 1.6e-203 713.8 593 63.2
EL10Ac6g13147 Beta vulgaris HOM05D004054 ORTHO05D004945 8.8e-202 708.0 883 50.1
A03p40440 Brassica napus HOM05D004054 ORTHO05D004945 2.6e-201 706.4 744 56.6
Nn1g02896 Nelumbo nucifera HOM05D004054 ORTHO05D004945 9.8e-201 704.5 876 49.7
Lj2g0020807 Lotus japonicus HOM05D004054 ORTHO05D004945 6.3e-200 701.8 738 55.6
Cpa.g.sc5.276 Carica papaya HOM05D004054 ORTHO05D004945 7.0e-199 698.4 559 67.4
SEGI_39580 Sequoiadendron giganteum HOM05D004054 ORTHO05D004945 6.6e-197 691.8 916 47.1
arahy.Tifrunner.gnm1.ann1.S53SYG Arachis hypogaea HOM05D004054 ORTHO05D004945 5.9e-190 668.7 862 48.4
arahy.Tifrunner.gnm1.ann1.B2D650 Arachis hypogaea HOM05D004054 ORTHO05D004945 4.9e-176 622.5 863 46.6
Gohir.A12G166800 Gossypium hirsutum HOM05D004054 ORTHO05D004945 5.1e-173 612.5 561 61.1
CDE02G2379 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 3.3e-164 583.2 767 45.5
unitig_22.g6528 Utricularia gibba HOM05D004054 ORTHO05D004945 5.6e-164 582.4 887 44.6
Lsat_1_v5_gn_4_9281 Lactuca sativa HOM05D004054 ORTHO05D004945 8.9e-162 575.1 838 44.2
VMungo1215G1372 Vigna mungo HOM05D004054 ORTHO05D004945 8.4e-160 568.5 1118 37.4
ECA234G1496 Erigeron canadensis HOM05D004054 ORTHO05D004945 7.1e-159 565.5 826 44.6
CiPaw.06G080700 Carya illinoinensis HOM05D004054 ORTHO05D004945 2.8e-155 553.5 452 66.6
HanXRQChr03g0092771 Helianthus annuus HOM05D004054 ORTHO05D004945 1.4e-151 541.2 757 44.8
Ah.03g132020 Amaranthus hybridus HOM05D004054 ORTHO05D004945 9.3e-143 511.9 555 54.1
Mapoly0224s0002 Marchantia polymorpha HOM05D004054 ORTHO05D004945 1.3e-136 491.5 851 38.8
Zm00001eb066230 Zea mays HOM05D004054 ORTHO05D004945 9.3e-135 485.3 598 50.0
Phvul.002G066700 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 2.7e-134 483.8 582 50.5
Pp3c16_680 Physcomitrium patens HOM05D004054 ORTHO05D004945 2.5e-116 424.1 808 37.9
unitig_8.g3947 Utricularia gibba HOM05D004054 ORTHO05D004945 5.9e-113 412.9 550 44.5
SMO119G0368 Selaginella moellendorffii HOM05D004054 ORTHO05D004945 2.4e-106 391.0 625 39.2
AagrBONN_evm.TU.Sc2ySwM_228.4114 Anthoceros agrestis HOM05D004054 ORTHO05D004945 2.3e-93 347.8 722 33.9
CiPaw.06G080600 Carya illinoinensis HOM05D004054 ORTHO05D004945 4.0e-85 320.5 372 51.1
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 7.7e-81 306.2 445 44.7
Cpa.g.sc5.277 Carica papaya HOM05D004054 ORTHO05D004945 2.5e-71 274.6 318 51.3
Potri.008G194566 Populus trichocarpa HOM05D004054 ORTHO05D004945 4.0e-69 267.3 263 58.9
Phvul.002G066500 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 6.8e-69 266.5 292 55.1
Potri.008G194632 Populus trichocarpa HOM05D004054 ORTHO05D004945 4.1e-58 230.7 195 68.2
Gohir.A12G166900 Gossypium hirsutum HOM05D004054 ORTHO05D004945 3.1e-53 214.5 252 50.8
MSTRG.2359 Avicennia marina HOM05D004054 ORTHO05D004945 4.4e-44 184.1 173 61.8
RcHm_v2.0_Chr1g0331861 Rosa chinensis HOM05D004054 ORTHO05D004945 1.1e-39 169.5 138 63.8
C02p33030 Brassica napus HOM05D004054 ORTHO05D004945 7.3e-31 140.2 389 34.7
C03p36410 Brassica napus HOM05D004054 ORTHO05D004945 2.9e-27 128.3 389 34.4
BolC3t15954H Brassica oleracea HOM05D004054 ORTHO05D004945 2.9e-27 128.3 389 34.4
CBR_g39858 Chara braunii HOM05D004054 ORTHO05D009492 8.1e-22 110.2 336 29.8
A05p04500 Brassica napus HOM05D004054 ORTHO05D004945 4.9e-19 100.9 190 38.4
C03p62480 Brassica napus HOM05D004054 ORTHO05D004945 4.9e-19 100.9 190 38.4
C08p43480 Brassica napus HOM05D004054 ORTHO05D004945 4.6e-17 94.4 141 42.6
PGSC0003DMG402017622 Solanum tuberosum HOM05D004054 ORTHO05D004945 1.9e-15 89.0 105 49.5
unitig_8.g3946 Utricularia gibba HOM05D004054 ORTHO05D004945 4.3e-15 87.8 190 33.2
Aqoxy4G02344 Aquilegia oxysepala HOM05D004054 ORTHO05D004945 1.3e-14 86.3 77 62.3
Lalb_Chr17g0340371 Lupinus albus HOM05D004054 ORTHO05D004945 4.8e-14 84.3 57 75.4
MBI09_g47007_MAGBIO Magnolia biondii HOM05D003023 ORTHO05D018021 8.2e-14 83.6 101 50.5
C06p17170 Brassica napus HOM05D004054 ORTHO05D004945 1.1e-13 83.2 177 36.7
CAN.G793.43 Capsicum annuum HOM05D004054 ORTHO05D004945 1.1e-13 83.2 165 39.4
BcaC08g44394 Brassica carinata HOM05D004054 ORTHO05D004945 1.3e-11 76.3 170 36.5
A01p41860 Brassica napus HOM05D004054 ORTHO05D004945 2.9e-11 75.1 106 45.3
BolC3t18505H Brassica oleracea HOM05D004054 ORTHO05D004945 3.8e-11 74.7 204 32.8
Lsat_1_v5_gn_7_73540 Lactuca sativa HOM05D004054 ORTHO05D004945 7.2e-10 70.5 66 59.1
CBR_g39853 Chara braunii HOM05D000019 ORTHO05D000002 1.0e-08 66.6 47 61.7
A06p30220 Brassica napus HOM05D003604 ORTHO05D004110 1.8e-08 65.9 89 47.2
C06p10280 Brassica napus HOM05D011797 ORTHO05D012335 6.7e-08 63.9 36 86.1
Lsat_1_v5_gn_5_60100 Lactuca sativa HOM05D004054 ORTHO05D036438 1.1e-07 63.2 83 50.6
Lsat_1_v5_gn_3_52120 Lactuca sativa HOM05D004054 ORTHO05D004945 1.5e-07 62.8 160 35.6
CBR_g39856 Chara braunii HOM05D000019 ORTHO05D000353 1.3e-06 59.7 217 24.9


User provided reference genes

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