Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G00067 Aquilegia oxysepala HOM05D004249 ORTHO05D005015 1.1e-118 429.9 205 100.0
Prupe.7G269600 Prunus persica HOM05D004249 ORTHO05D005015 7.8e-88 327.4 203 73.9
Haze_11142 Corylus avellana HOM05D004249 ORTHO05D005015 2.1e-85 319.3 200 73.0
MD15G1143500 Malus domestica HOM05D004249 ORTHO05D005015 2.1e-85 319.3 200 73.0
RcHm_v2.0_Chr2g0084541 Rosa chinensis HOM05D004249 ORTHO05D005015 2.8e-85 318.9 205 72.7
Cfa008510 Carpinus fangiana HOM05D004249 ORTHO05D005015 4.8e-85 318.2 200 72.5
Haze_11140 Corylus avellana HOM05D004249 ORTHO05D005015 8.1e-85 317.4 200 72.5
MBI10_g45897_MAGBIO Magnolia biondii HOM05D004249 ORTHO05D005015 1.1e-84 317.0 200 73.0
FAN26G1858 Fragaria x ananassa HOM05D004249 ORTHO05D005015 1.4e-84 316.6 197 72.6
Hma1.2p1_0872F.1_g231130 Hydrangea macrophylla HOM05D004249 ORTHO05D005015 1.4e-84 316.6 200 70.5
Actinidia34567 Actinidia chinensis HOM05D004249 ORTHO05D005015 1.8e-84 316.2 199 71.9
Peaxi162Scf01205g00038 Petunia axillaris HOM05D004249 ORTHO05D005015 2.4e-84 315.8 201 70.1
FvH4_1g00240 Fragaria vesca HOM05D004249 ORTHO05D005015 9.0e-84 313.9 199 71.4
Potri.017G007000 Populus trichocarpa HOM05D004249 ORTHO05D005015 1.5e-83 313.2 201 68.7
Sopen08g005580 Solanum pennellii HOM05D004249 ORTHO05D005015 2.6e-83 312.4 201 68.7
Manes.01G010300 Manihot esculenta HOM05D004249 ORTHO05D005015 9.9e-83 310.5 200 71.5
PGSC0003DMG400025227 Solanum tuberosum HOM05D004249 ORTHO05D005015 9.9e-83 310.5 198 69.2
GSVIVG01038246001 Vitis vinifera HOM05D004249 ORTHO05D005015 9.9e-83 310.5 201 69.2
Ciclev10024361m.g Citrus clementina HOM05D004249 ORTHO05D005015 1.7e-82 309.7 201 69.2
Eucgr.A00430 Eucalyptus grandis HOM05D004249 ORTHO05D005015 4.9e-82 308.1 199 69.8
Solyc08g014600.4 Solanum lycopersicum HOM05D004249 ORTHO05D005015 6.4e-82 307.8 200 68.5
CAN.G607.4 Capsicum annuum HOM05D004249 ORTHO05D005015 8.4e-82 307.4 201 67.2
MSTRG.9267 Avicennia marina HOM05D004249 ORTHO05D005015 1.4e-81 306.6 203 69.0
Cpa.g.sc151.2 Carica papaya HOM05D004249 ORTHO05D005015 1.9e-81 306.2 190 73.2
GSVIVG01038247001 Vitis vinifera HOM05D004249 ORTHO05D005015 2.4e-81 305.8 196 70.4
PGR042G1833 Punica granatum HOM05D004249 ORTHO05D005015 4.2e-81 305.1 201 69.7
PSO675G2456 Papaver somniferum HOM05D004249 ORTHO05D005015 9.3e-81 303.9 199 70.9
QL10p064195 Quercus lobata HOM05D004249 ORTHO05D005015 9.3e-81 303.9 198 70.2
Migut.G00862 Erythranthe guttata HOM05D004249 ORTHO05D005015 1.2e-80 303.5 199 70.4
Atru.chr3.2004 Acer truncatum HOM05D004249 ORTHO05D005015 3.5e-80 302.0 201 67.7
Cc03_g16020 Coffea canephora HOM05D004249 ORTHO05D005015 3.5e-80 302.0 199 70.4
PSO675G1470 Papaver somniferum HOM05D004249 ORTHO05D005015 6.0e-80 301.2 194 71.6
PSO675G8665 Papaver somniferum HOM05D004249 ORTHO05D005015 1.0e-79 300.4 195 69.7
PSO541G6333 Papaver somniferum HOM05D004249 ORTHO05D005015 1.3e-79 300.1 199 69.3
PSO675G2958 Papaver somniferum HOM05D004249 ORTHO05D005015 3.0e-79 298.9 200 68.0
TAR633G0865 Trochodendron aralioides HOM05D004249 ORTHO05D005015 3.0e-79 298.9 182 74.7
Cpa.g.sc151.3 Carica papaya HOM05D004249 ORTHO05D005015 5.1e-79 298.1 193 68.4
CsaV3_4G029860 Cucumis sativus L. HOM05D004249 ORTHO05D005015 6.7e-79 297.7 202 70.3
Sed0024580 Sechium edule HOM05D004249 ORTHO05D005015 1.5e-78 296.6 200 67.5
Duzib093G0712 Durio zibethinus HOM05D004249 ORTHO05D005015 4.3e-78 295.0 201 65.2
Thecc.05G001900 Theobroma cacao HOM05D004249 ORTHO05D005015 4.3e-78 295.0 201 65.7
Sabra17G0007900 Salix brachista HOM05D001637 ORTHO05D002178 5.6e-78 294.7 183 72.1
CDE07G0873 Ceratophyllum demersum HOM05D004249 ORTHO05D005015 7.4e-78 294.3 199 67.8
Gorai.006G186800 Gossypium raimondii HOM05D004249 ORTHO05D005015 7.4e-78 294.3 201 65.2
FAN28G1175 Fragaria x ananassa HOM05D004249 ORTHO05D005015 9.6e-78 293.9 190 70.5
unitig_0.g2413 Utricularia gibba HOM05D004249 ORTHO05D005015 9.6e-78 293.9 199 67.3
SalBow3G0617 Salvia bowleyana HOM05D004249 ORTHO05D005015 1.3e-77 293.5 198 66.7
AUR62002468 Chenopodium quinoa HOM05D004249 ORTHO05D005015 1.6e-77 293.1 215 62.8
PSO675G5594 Papaver somniferum HOM05D004249 ORTHO05D005015 2.8e-77 292.4 193 69.4
Dinv24754 Davidia involucrata HOM05D004249 ORTHO05D005015 1.1e-76 290.4 181 72.4
PSO541G3219 Papaver somniferum HOM05D004249 ORTHO05D005015 1.1e-76 290.4 199 69.3
THA.LOC104804252 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 1.1e-76 290.4 193 65.8
Thhalv10001619m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 3.1e-76 288.9 197 64.0
Carub.0004s2650 Capsella rubella HOM05D004249 ORTHO05D005015 1.5e-75 286.6 197 64.0
ATR0743G017 Amborella trichopoda HOM05D004249 ORTHO05D005015 4.5e-75 285.0 198 64.1
CARHR139110 Cardamine hirsuta HOM05D004249 ORTHO05D005015 4.5e-75 285.0 197 64.0
Thhalv10001612m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 4.5e-75 285.0 192 64.6
vmacro05005 Vaccinium macrocarpon HOM05D004249 ORTHO05D005015 5.8e-75 284.6 204 63.7
AL4G42810 Arabidopsis lyrata HOM05D004249 ORTHO05D005015 1.7e-74 283.1 193 64.8
CARHR139100 Cardamine hirsuta HOM05D004249 ORTHO05D005015 2.2e-74 282.7 192 64.6
QL10p064299 Quercus lobata HOM05D000004 ORTHO05D000002 2.2e-74 282.7 183 69.9
AT2G43940 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 4.9e-74 281.6 197 63.5
Cpa.g.sc151.4 Carica papaya HOM05D004249 ORTHO05D005015 4.9e-74 281.6 201 64.2
Sp4g26000 Schrenkiella parvula HOM05D004249 ORTHO05D005015 4.9e-74 281.6 192 64.1
AT2G43910 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 8.4e-74 280.8 192 64.6
AL4G42780 Arabidopsis lyrata HOM05D004249 ORTHO05D005015 1.9e-73 279.6 192 64.1
BcaC02g12353 Brassica carinata HOM05D004249 ORTHO05D005015 1.9e-73 279.6 192 63.0
C04p04840 Brassica napus HOM05D004249 ORTHO05D005015 1.9e-73 279.6 192 63.0
Oeu064015.2 Olea europaea HOM05D004249 ORTHO05D005015 2.4e-73 279.3 181 66.3
Aa31LG1G25620 Aethionema arabicum HOM05D004249 ORTHO05D005015 3.2e-73 278.9 192 65.1
A05p04060 Brassica napus HOM05D004249 ORTHO05D005015 3.2e-73 278.9 192 63.0
Sp4g26030 Schrenkiella parvula HOM05D004249 ORTHO05D005015 3.2e-73 278.9 196 62.8
BcaB06g29506 Brassica carinata HOM05D004249 ORTHO05D005015 4.2e-73 278.5 192 63.0
C04p70820 Brassica napus HOM05D004249 ORTHO05D005015 5.5e-73 278.1 192 63.0
Carub.0004s2647 Capsella rubella HOM05D004249 ORTHO05D005015 5.5e-73 278.1 192 64.1
DCAR_027496 Daucus carota HOM05D004249 ORTHO05D005015 7.1e-73 277.7 187 67.4
BcaC02g07143 Brassica carinata HOM05D004249 ORTHO05D005015 1.2e-72 276.9 192 62.0
SGA_v2.0_scaffold37G14935 Striga asiatica HOM05D004249 ORTHO05D005015 1.6e-72 276.6 179 69.3
Aa31LG1G25630 Aethionema arabicum HOM05D004249 ORTHO05D005015 3.5e-72 275.4 197 60.9
AT2G43920 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 4.6e-72 275.0 192 63.5
A04p33130 Brassica napus HOM05D004249 ORTHO05D005015 1.0e-71 273.9 196 62.8
AUR62023721 Chenopodium quinoa HOM05D004249 ORTHO05D005015 1.0e-71 273.9 188 66.0
Sp4g26010 Schrenkiella parvula HOM05D004249 ORTHO05D005015 1.3e-71 273.5 192 63.0
CSS0044272 Camellia sinensis var. sinensis HOM05D004249 ORTHO05D005015 3.0e-71 272.3 178 70.2
BcaC02g07142 Brassica carinata HOM05D004249 ORTHO05D005015 5.1e-71 271.6 196 61.2
BolC4t28585H Brassica oleracea HOM05D004249 ORTHO05D005015 5.1e-71 271.6 196 61.2
BraA04t18772Z Brassica rapa HOM05D004249 ORTHO05D005015 5.1e-71 271.6 196 62.2
C04p70830 Brassica napus HOM05D004249 ORTHO05D005015 8.7e-71 270.8 196 60.7
THA.LOC104804276 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 1.1e-70 270.4 194 60.8
SEGI_12768 Sequoiadendron giganteum HOM05D004249 ORTHO05D005015 2.5e-70 269.2 190 61.6
AUR62002469 Chenopodium quinoa HOM05D004249 ORTHO05D005015 5.6e-70 268.1 192 64.1
PSO541G5503 Papaver somniferum HOM05D004249 ORTHO05D005015 5.6e-70 268.1 183 66.1
THA.LOC104802342 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 1.6e-69 266.5 198 57.1
Lj6A284T20 Lonicera japonica HOM05D004249 ORTHO05D005015 2.8e-69 265.8 227 57.3
FAN23G1087 Fragaria x ananassa HOM05D004249 ORTHO05D005015 6.2e-69 264.6 210 61.4
Sp4g26020 Schrenkiella parvula HOM05D004249 ORTHO05D005015 1.1e-68 263.8 192 57.8
Carub.0004s2648 Capsella rubella HOM05D004249 ORTHO05D005015 1.4e-68 263.5 192 60.4
BcaB02g08894 Brassica carinata HOM05D004249 ORTHO05D005015 1.8e-68 263.1 193 61.1
QL10p064222 Quercus lobata HOM05D000009 ORTHO05D000116 1.8e-68 263.1 184 65.2
EL10Ac3g06159 Beta vulgaris HOM05D004249 ORTHO05D005015 4.0e-68 261.9 190 63.2
BcaB06g29508 Brassica carinata HOM05D004249 ORTHO05D005015 5.3e-68 261.5 188 61.7
BraA04t18771Z Brassica rapa HOM05D004249 ORTHO05D005015 5.3e-68 261.5 194 60.3
BolC4t28584H Brassica oleracea HOM05D004249 ORTHO05D005015 6.9e-68 261.2 194 59.8
Os06g0153900 Oryza sativa ssp. japonica HOM05D004249 ORTHO05D005015 1.5e-67 260.0 201 59.7
Hund12312 Selenicereus undatus HOM05D004249 ORTHO05D005015 2.0e-67 259.6 201 59.7
A04p33120 Brassica napus HOM05D004249 ORTHO05D005015 2.6e-67 259.2 182 61.5
TWI15G0032 Tripterygium wilfordii HOM05D004249 ORTHO05D005015 5.8e-67 258.1 201 59.7
BraA05t19394Z Brassica rapa HOM05D004249 ORTHO05D005015 7.6e-67 257.7 182 61.5
BcaB06g29349 Brassica carinata HOM05D004249 ORTHO05D005015 2.2e-66 256.1 180 62.8
C04p04860 Brassica napus HOM05D004249 ORTHO05D005015 2.5e-65 252.7 251 49.4
Thhalv10019674m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 2.5e-65 252.7 182 61.5
BcaB02g08889 Brassica carinata HOM05D004249 ORTHO05D005015 1.3e-63 246.9 201 57.2
BolC4t22116H Brassica oleracea HOM05D004249 ORTHO05D005015 5.1e-63 245.0 191 58.1
SMO144G0018 Selaginella moellendorffii HOM05D004249 ORTHO05D005015 3.3e-62 242.3 192 56.8
BcaC02g12352 Brassica carinata HOM05D004249 ORTHO05D005015 4.3e-62 241.9 193 53.4
A05p04090 Brassica napus HOM05D004249 ORTHO05D005015 4.3e-62 241.9 193 53.4
C04p04870 Brassica napus HOM05D004249 ORTHO05D005015 4.3e-62 241.9 193 53.4
BolC4t22117H Brassica oleracea HOM05D004249 ORTHO05D005015 4.3e-62 241.9 193 53.4
BraA05t19396Z Brassica rapa HOM05D004249 ORTHO05D005015 4.3e-62 241.9 193 53.4
PSO541G3414 Papaver somniferum HOM05D004249 ORTHO05D005015 5.7e-62 241.5 192 61.5
Nitab4.5_0000013g0070 Nicotiana tabacum HOM05D004249 ORTHO05D005015 7.4e-62 241.1 165 66.7
CiPaw.01G201200 Carya illinoinensis HOM05D004249 ORTHO05D005015 1.3e-61 240.4 200 60.5
Nitab4.5_0007944g0050 Nicotiana tabacum HOM05D004249 ORTHO05D005015 2.8e-61 239.2 165 66.7
Mapoly0115s0024 Marchantia polymorpha HOM05D004249 ORTHO05D005015 1.2e-59 233.8 191 53.9
AagrBONN_evm.TU.Sc2ySwM_117.2259 Anthoceros agrestis HOM05D004249 ORTHO05D005015 2.0e-59 233.0 192 56.8
Os03g0843800 Oryza sativa ssp. japonica HOM05D004249 ORTHO05D005015 7.6e-59 231.1 202 52.5
BcaB02g08885 Brassica carinata HOM05D004249 ORTHO05D005015 2.5e-57 226.1 197 50.3
PSO541G0314 Papaver somniferum HOM05D004249 ORTHO05D005015 3.2e-57 225.7 153 71.9
BcaB02g08886 Brassica carinata HOM05D004249 ORTHO05D005015 4.2e-57 225.3 178 56.2
BcaB06g29507 Brassica carinata HOM05D004249 ORTHO05D005015 4.6e-56 221.9 178 56.7
BcaB02g08891 Brassica carinata HOM05D004249 ORTHO05D005015 1.3e-55 220.3 177 59.9
Nn1g09449 Nelumbo nucifera HOM05D004249 ORTHO05D005015 6.7e-55 218.0 144 70.1
HPP92_011584 Vanilla planifolia HOM05D004249 ORTHO05D005015 3.4e-51 205.7 145 62.1
Gohir.A09G169300 Gossypium hirsutum HOM05D004249 ORTHO05D005015 5.9e-51 204.9 142 62.7
CSS0037089 Camellia sinensis var. sinensis HOM05D004249 ORTHO05D005015 2.9e-50 202.6 152 64.5
Pp3c2_32550 Physcomitrium patens HOM05D004249 ORTHO05D005015 4.2e-49 198.7 184 50.5
Gohir.D09G165000 Gossypium hirsutum HOM05D004249 ORTHO05D005015 1.6e-48 196.8 201 49.3
BolC4t22114H Brassica oleracea HOM05D004249 ORTHO05D005015 2.8e-45 186.0 125 62.4
COL.COLO4_19904 Corchorus olitorius HOM05D004249 ORTHO05D005015 5.7e-38 161.8 111 64.9
THA.LOC104824126 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 4.8e-37 158.7 118 61.0
COL.COLO4_14412 Corchorus olitorius HOM05D001637 ORTHO05D002178 1.1e-33 147.5 186 41.9
MCO07G181 Micromonas commoda HOM05D004249 ORTHO05D005015 5.5e-33 145.2 204 39.7
C02p63480 Brassica napus HOM05D004249 ORTHO05D005015 9.4e-33 144.4 180 44.4
C09p12990 Brassica napus HOM05D004249 ORTHO05D024151 6.1e-32 141.7 180 43.9
BolC8t49376H Brassica oleracea HOM05D004249 ORTHO05D005015 6.1e-32 141.7 180 43.9
BolC7t41877H Brassica oleracea HOM05D004249 ORTHO05D005015 3.3e-30 136.0 188 42.6
AUR62023720 Chenopodium quinoa HOM05D004249 ORTHO05D005015 3.5e-27 125.9 96 60.4
PRCOL_00002738 Prasinoderma coloniale HOM05D004249 ORTHO05D005015 1.3e-26 124.0 197 35.0
MBI10_g23575_MAGBIO Magnolia biondii HOM05D004249 ORTHO05D005015 2.9e-26 122.9 60 88.3
ClCG04G002900 Citrullus lanatus HOM05D004249 ORTHO05D005015 8.5e-26 121.3 74 73.0
vmacro00720 Vaccinium macrocarpon HOM05D004249 ORTHO05D005015 3.2e-25 119.4 85 63.5
MELO3C033208.2 Cucumis melo HOM05D004249 ORTHO05D005015 5.5e-25 118.6 74 71.6
THA.LOC104824119 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 1.8e-23 113.6 74 59.5
HPP92_011580 Vanilla planifolia HOM05D004249 ORTHO05D005015 5.2e-23 112.1 69 68.1
Cre04.g215600 Chlamydomonas reinhardtii HOM05D004249 ORTHO05D005015 2.6e-22 109.8 207 34.8
C08p48990 Brassica napus HOM05D004249 ORTHO05D005015 4.8e-21 105.5 75 64.0
C08p17510 Brassica napus HOM05D004249 ORTHO05D005015 1.8e-20 103.6 74 63.5
HPP92_011579 Vanilla planifolia HOM05D004249 ORTHO05D005015 4.1e-20 102.4 76 63.2
Thhalv10001708m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 5.9e-19 98.6 74 58.1
SGA_v2.0_scaffold37G14917 Striga asiatica HOM05D004249 ORTHO05D005015 8.6e-18 94.7 170 37.6
Nn1g09453 Nelumbo nucifera HOM05D004249 ORTHO05D005015 5.2e-15 85.5 44 77.3
EL10Ac3g06161 Beta vulgaris HOM05D004249 ORTHO05D005015 2.6e-14 83.2 150 35.3
HPP92_011581 Vanilla planifolia HOM05D004249 ORTHO05D005015 1.7e-13 80.5 54 55.6
C03p29320 Brassica napus HOM05D004249 ORTHO05D005015 3.7e-13 79.3 148 34.5
BolC3t15278H Brassica oleracea HOM05D004249 ORTHO05D005015 3.7e-13 79.3 148 34.5
BraA03t09486Z Brassica rapa HOM05D004249 ORTHO05D005015 3.8e-10 69.3 45 66.7
FAN23G1236 Fragaria x ananassa HOM05D004249 ORTHO05D005015 3.8e-10 69.3 47 70.2
Cfa025661 Carpinus fangiana HOM05D004249 ORTHO05D005015 8.0e-08 61.6 132 32.6


User provided reference genes

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