Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G00024 Aquilegia oxysepala HOM05D004056 ORTHO05D004894 3.3e-127 458.4 233 100.0
TAR636G0170 Trochodendron aralioides HOM05D004056 ORTHO05D004894 1.2e-73 280.4 228 67.5
Nn1g07984 Nelumbo nucifera HOM05D004056 ORTHO05D004894 1.8e-72 276.6 235 67.2
Potri.002G246100 Populus trichocarpa HOM05D004056 ORTHO05D004894 5.4e-69 265.0 235 63.0
TAR362G0687 Trochodendron aralioides HOM05D004056 ORTHO05D004894 1.3e-67 260.4 235 62.6
MBI07_g18993_MAGBIO Magnolia biondii HOM05D004056 ORTHO05D004894 1.7e-67 260.0 235 60.4
Sabra02G0187400 Salix brachista HOM05D004056 ORTHO05D004894 2.3e-67 259.6 235 61.7
Hma1.2p1_0226F.1_g095370 Hydrangea macrophylla HOM05D004056 ORTHO05D004894 6.6e-67 258.1 236 61.9
Prupe.8G198700 Prunus persica HOM05D004056 ORTHO05D004894 6.6e-67 258.1 226 63.3
Cfa004161 Carpinus fangiana HOM05D004056 ORTHO05D004894 8.7e-67 257.7 235 63.4
Dinv00576 Davidia involucrata HOM05D004056 ORTHO05D004894 8.7e-67 257.7 205 67.8
Rhsim13G0047900 Rhododendron simsii HOM05D004056 ORTHO05D004894 1.1e-66 257.3 232 61.2
TAR365G1100 Trochodendron aralioides HOM05D004056 ORTHO05D004894 6.2e-65 251.5 223 64.6
Lj1A89T71 Lonicera japonica HOM05D004056 ORTHO05D004894 8.1e-65 251.1 226 61.9
Actinidia30050 Actinidia chinensis HOM05D004056 ORTHO05D004894 4.0e-64 248.8 235 60.4
TWI18G1219 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 5.3e-64 248.4 238 58.8
Actinidia39428 Actinidia chinensis HOM05D004056 ORTHO05D004894 6.9e-64 248.1 236 60.6
Rhsim01G0253300 Rhododendron simsii HOM05D004056 ORTHO05D004894 9.0e-64 247.7 236 58.9
vmacro02784 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 9.0e-64 247.7 247 57.9
CiPaw.01G050800 Carya illinoinensis HOM05D004056 ORTHO05D004894 2.0e-63 246.5 234 59.4
Duzib138G1417 Durio zibethinus HOM05D004056 ORTHO05D004894 4.5e-63 245.4 235 58.3
CDE09G0677 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 7.6e-63 244.6 226 61.5
vmacro14736 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 9.9e-63 244.2 235 58.3
Thecc.01G219700 Theobroma cacao HOM05D004056 ORTHO05D004894 1.3e-62 243.8 235 58.7
Dinv19168 Davidia involucrata HOM05D004056 ORTHO05D004894 1.7e-62 243.4 197 66.5
Atru.chr6.1427 Acer truncatum HOM05D004056 ORTHO05D004894 2.9e-62 242.7 241 56.0
CiPaw.02G023900 Carya illinoinensis HOM05D004056 ORTHO05D004894 6.4e-62 241.5 234 59.0
TWI36G0821 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 8.4e-62 241.1 239 56.9
COL.COLO4_34102 Corchorus olitorius HOM05D004056 ORTHO05D004894 1.1e-61 240.7 235 57.9
TAR633G1317 Trochodendron aralioides HOM05D004056 ORTHO05D004894 3.2e-61 239.2 176 73.3
Duzib133G0422 Durio zibethinus HOM05D004056 ORTHO05D004894 1.6e-60 236.9 235 57.4
DCAR_012671 Daucus carota HOM05D004056 ORTHO05D004894 4.6e-60 235.3 225 60.4
Duzib211G0551 Durio zibethinus HOM05D004056 ORTHO05D004894 6.0e-60 235.0 228 56.6
Gorai.001G188300 Gossypium raimondii HOM05D004056 ORTHO05D004894 6.0e-60 235.0 239 57.7
MD10G1159600 Malus domestica HOM05D004056 ORTHO05D004894 6.0e-60 235.0 218 61.0
VMungo1383G1286 Vigna mungo HOM05D004056 ORTHO05D004894 7.9e-60 234.6 216 60.6
Lalb_Chr19g0125861 Lupinus albus HOM05D004056 ORTHO05D004894 3.0e-59 232.6 232 59.1
Dinv12647 Davidia involucrata HOM05D004056 ORTHO05D004894 5.1e-59 231.9 186 68.3
Gohir.A07G198800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 5.1e-59 231.9 211 59.2
Cc01_g16690 Coffea canephora HOM05D004056 ORTHO05D004894 6.7e-59 231.5 236 55.9
Gohir.D07G164400 Gossypium hirsutum HOM05D004056 ORTHO05D004894 8.7e-59 231.1 239 56.9
Gohir.D07G205300 Gossypium hirsutum HOM05D004056 ORTHO05D004894 8.7e-59 231.1 209 59.3
Gorai.001G231300 Gossypium raimondii HOM05D004056 ORTHO05D004894 8.7e-59 231.1 209 59.3
ATR0561G205 Amborella trichopoda HOM05D004056 ORTHO05D004894 1.5e-58 230.3 223 59.6
Phvul.008G131500 Phaseolus vulgaris HOM05D004056 ORTHO05D004894 1.5e-58 230.3 237 57.8
Manes.13G049600 Manihot esculenta HOM05D004056 ORTHO05D004894 2.5e-58 229.6 235 58.3
Solyc09g059510.3 Solanum lycopersicum HOM05D004056 ORTHO05D004894 5.6e-58 228.4 235 57.0
Gohir.A07G093100 Gossypium hirsutum HOM05D004056 ORTHO05D004894 9.6e-58 227.6 236 57.6
Manes.12G047500 Manihot esculenta HOM05D004056 ORTHO05D004894 1.3e-57 227.3 235 57.4
MD05G1171400 Malus domestica HOM05D004056 ORTHO05D004894 2.1e-57 226.5 229 57.2
CANSAT01G2574 Cannabis sativa HOM05D004056 ORTHO05D004894 2.8e-57 226.1 233 55.4
CAN.G5.40 Capsicum annuum HOM05D004056 ORTHO05D004894 2.8e-57 226.1 202 61.4
arahy.Tifrunner.gnm1.ann1.8LB9ZD Arachis hypogaea HOM05D004056 ORTHO05D004894 3.7e-57 225.7 236 56.8
PGSC0003DMG400017485 Solanum tuberosum HOM05D004056 ORTHO05D004894 3.7e-57 225.7 192 64.1
Eucgr.K02136 Eucalyptus grandis HOM05D004056 ORTHO05D004894 4.8e-57 225.3 234 56.8
Haze_15250 Corylus avellana HOM05D004056 ORTHO05D004894 6.2e-57 224.9 172 70.3
Cpa.g.sc21.106 Carica papaya HOM05D004056 ORTHO05D004894 8.1e-57 224.6 251 53.8
HPP92_006215 Vanilla planifolia HOM05D004056 ORTHO05D004894 8.1e-57 224.6 234 56.4
Gohir.D07G097700 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.1e-56 224.2 232 57.3
Gorai.001G105100 Gossypium raimondii HOM05D004056 ORTHO05D004894 1.1e-56 224.2 232 56.9
Nitab4.5_0001161g0130 Nicotiana tabacum HOM05D004056 ORTHO05D004894 1.1e-56 224.2 202 61.9
CDE02G4431 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 3.1e-56 222.6 224 58.0
arahy.Tifrunner.gnm1.ann1.2MPX2Y Arachis hypogaea HOM05D004056 ORTHO05D004894 6.9e-56 221.5 277 50.2
Nitab4.5_0000045g0550 Nicotiana tabacum HOM05D004056 ORTHO05D004894 6.9e-56 221.5 188 64.4
SalBow6G2821 Salvia bowleyana HOM05D004056 ORTHO05D004894 1.5e-55 220.3 228 57.0
SalBow6G5583 Salvia bowleyana HOM05D004056 ORTHO05D004894 1.5e-55 220.3 228 57.0
Ciclev10021891m.g Citrus clementina HOM05D004056 ORTHO05D004894 2.0e-55 219.9 246 53.3
RcHm_v2.0_Chr6g0284081 Rosa chinensis HOM05D004056 ORTHO05D004894 2.6e-55 219.5 231 55.4
HPP92_024244 Vanilla planifolia HOM05D004056 ORTHO05D004894 2.6e-55 219.5 234 55.6
DCAR_018636 Daucus carota HOM05D004056 ORTHO05D004894 4.5e-55 218.8 228 55.7
Gorai.007G156300 Gossypium raimondii HOM05D004056 ORTHO05D004894 4.5e-55 218.8 235 54.0
Oeu051533.1 Olea europaea HOM05D004056 ORTHO05D004894 4.5e-55 218.8 224 58.5
FvH4_2g18520 Fragaria vesca HOM05D004056 ORTHO05D004894 5.8e-55 218.4 225 56.4
MSTRG.20969 Avicennia marina HOM05D004056 ORTHO05D004894 1.7e-54 216.9 196 61.2
GSVIVG01003250001 Vitis vinifera HOM05D004056 ORTHO05D004894 1.7e-54 216.9 151 74.2
Gohir.A11G139600 Gossypium hirsutum HOM05D004056 ORTHO05D004894 2.2e-54 216.5 236 54.2
Sopen09g022670 Solanum pennellii HOM05D004056 ORTHO05D004894 3.8e-54 215.7 202 60.4
Peaxi162Scf00068g00224 Petunia axillaris HOM05D004056 ORTHO05D004894 4.9e-54 215.3 173 65.3
Sc17g0002100 Simmondsia chinensis HOM05D004056 ORTHO05D004894 1.4e-53 213.8 234 54.7
Gohir.D11G145800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.9e-53 213.4 235 53.2
Lj3g0018087 Lotus japonicus HOM05D004056 ORTHO05D004894 3.2e-53 212.6 237 57.0
MSTRG.18836 Avicennia marina HOM05D004056 ORTHO05D004894 1.2e-52 210.7 233 55.4
Gohir.A07G160800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.6e-52 210.3 186 62.4
Sed0007046 Sechium edule HOM05D004056 ORTHO05D004894 3.5e-52 209.1 227 55.9
QL09p051117 Quercus lobata HOM05D004056 ORTHO05D004894 4.6e-52 208.8 145 72.4
MSTRG.12776 Avicennia marina HOM05D004056 ORTHO05D004894 1.3e-51 207.2 225 55.6
Migut.D02503 Erythranthe guttata HOM05D004056 ORTHO05D004894 1.8e-51 206.8 200 58.0
ClCG07G002100 Citrullus lanatus HOM05D004056 ORTHO05D004894 3.9e-51 205.7 246 51.6
HanXRQChr01g0015301 Helianthus annuus HOM05D004056 ORTHO05D004894 5.1e-51 205.3 226 54.0
Medtr7g055857 Medicago truncatula HOM05D004056 ORTHO05D004894 8.7e-51 204.5 235 55.3
Medtr8g012655 Medicago truncatula HOM05D004056 ORTHO05D004894 1.1e-50 204.1 243 55.1
Os02g0499000 Oryza sativa ssp. japonica HOM05D004056 ORTHO05D004894 1.5e-50 203.8 211 56.4
Ca_23224_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 7.4e-50 201.4 240 52.9
FAN27G1039 Fragaria x ananassa HOM05D004056 ORTHO05D004894 9.6e-50 201.1 184 59.8
FAN24G0472 Fragaria x ananassa HOM05D004056 ORTHO05D008391 1.3e-49 200.7 186 59.7
Psat3g149240 Pisum sativum HOM05D004056 ORTHO05D004894 1.3e-49 200.7 233 54.5
TPR.G11183 Trifolium pratense HOM05D004056 ORTHO05D004894 2.1e-49 199.9 243 55.1
MD10G1039600 Malus domestica HOM05D001916 ORTHO05D004894 3.7e-49 199.1 189 60.3
MELO3C022718.2 Cucumis melo HOM05D004056 ORTHO05D004894 4.8e-49 198.7 225 53.3
CsaV3_7G026330 Cucumis sativus L. HOM05D004056 ORTHO05D004894 6.2e-49 198.4 191 57.6
unitig_736.g22344 Utricularia gibba HOM05D004056 ORTHO05D004894 8.2e-49 198.0 185 62.2
Zm00001eb241420 Zea mays HOM05D004056 ORTHO05D004894 8.2e-49 198.0 211 55.9
Glyma.08G348300 Glycine max HOM05D004056 ORTHO05D004894 1.4e-48 197.2 236 52.1
Lsat_1_v5_gn_5_180841 Lactuca sativa HOM05D004056 ORTHO05D004894 1.4e-48 197.2 231 52.8
CsaV3_3G030040 Cucumis sativus L. HOM05D004056 ORTHO05D004894 3.1e-48 196.1 198 57.6
FAN15G2777 Fragaria x ananassa HOM05D004056 ORTHO05D008391 3.1e-48 196.1 192 57.3
Oeu057860.1 Olea europaea HOM05D004056 ORTHO05D004894 6.9e-48 194.9 179 62.0
PGR044G2021 Punica granatum HOM05D004056 ORTHO05D004894 4.5e-47 192.2 235 50.6
EL10Ac7g17907 Beta vulgaris HOM05D004056 ORTHO05D004894 1.7e-46 190.3 248 49.6
PSO063G1373 Papaver somniferum HOM05D004056 ORTHO05D004894 2.9e-46 189.5 193 53.4
VMungo0331G1907 Vigna mungo HOM05D004056 ORTHO05D004894 2.9e-46 189.5 190 56.8
Lj1g0006098 Lotus japonicus HOM05D004056 ORTHO05D004894 3.8e-46 189.1 225 51.6
AUR62016545 Chenopodium quinoa HOM05D004056 ORTHO05D004894 2.5e-45 186.4 239 49.8
Hund05580 Selenicereus undatus HOM05D004056 ORTHO05D004894 4.2e-45 185.7 250 47.6
Lsat_1_v5_gn_8_89300 Lactuca sativa HOM05D004056 ORTHO05D004894 5.5e-45 185.3 193 55.4
ClCG09G008620 Citrullus lanatus HOM05D004056 ORTHO05D004894 2.1e-44 183.3 173 57.2
ECA248G0601 Erigeron canadensis HOM05D004056 ORTHO05D004894 2.1e-44 183.3 231 48.9
Sed0026975 Sechium edule HOM05D004056 ORTHO05D004894 2.1e-44 183.3 203 51.2
PSO017G4055 Papaver somniferum HOM05D004056 ORTHO05D004894 2.7e-44 183.0 190 53.7
SGA_v2.0_scaffold18G08335 Striga asiatica HOM05D004056 ORTHO05D004894 3.5e-44 182.6 227 52.0
AUR62001134 Chenopodium quinoa HOM05D004056 ORTHO05D004894 7.9e-44 181.4 245 48.2
unitig_899.g15016 Utricularia gibba HOM05D004056 ORTHO05D004894 1.8e-43 180.3 197 55.8
THA.LOC104804624 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 2.3e-43 179.9 247 48.6
Migut.N00633 Erythranthe guttata HOM05D004056 ORTHO05D004894 5.1e-43 178.7 222 49.5
CARHR218370 Cardamine hirsuta HOM05D004056 ORTHO05D004894 3.3e-42 176.0 212 51.4
unitig_26.g9438 Utricularia gibba HOM05D004056 ORTHO05D004894 3.3e-42 176.0 190 57.4
BcaB04g17724 Brassica carinata HOM05D004056 ORTHO05D004894 4.3e-42 175.6 213 51.6
Thhalv10026242m.g Eutrema salsugineum HOM05D004056 ORTHO05D004894 4.3e-42 175.6 206 51.5
Glyma.18G159900 Glycine max HOM05D004056 ORTHO05D004894 1.6e-41 173.7 135 65.9
Sp7g10210 Schrenkiella parvula HOM05D004056 ORTHO05D004894 6.3e-41 171.8 229 48.5
Hund18433 Selenicereus undatus HOM05D004056 ORTHO05D004894 8.2e-41 171.4 181 52.5
C08p08780 Brassica napus HOM05D004056 ORTHO05D004894 1.4e-40 170.6 207 50.2
BcaC07g37403 Brassica carinata HOM05D004056 ORTHO05D004894 3.1e-40 169.5 207 49.8
BolC8t47725H Brassica oleracea HOM05D004056 ORTHO05D004894 3.1e-40 169.5 207 49.8
TPR.G6483 Trifolium pratense HOM05D004056 ORTHO05D004894 3.1e-40 169.5 236 48.7
Aa31LG9G5020 Aethionema arabicum HOM05D004056 ORTHO05D004894 4.1e-40 169.1 172 55.2
HanXRQChr04g0108001 Helianthus annuus HOM05D004056 ORTHO05D004894 4.1e-40 169.1 228 47.8
Sed0002122 Sechium edule HOM05D004056 ORTHO05D004894 2.6e-39 166.4 149 60.4
A08p07180 Brassica napus HOM05D004056 ORTHO05D004894 5.9e-39 165.2 201 50.7
AL9U11310 Arabidopsis lyrata HOM05D004056 ORTHO05D004894 7.6e-39 164.9 212 48.6
MELO3C028860.2 Cucumis melo HOM05D004056 ORTHO05D004894 1.0e-38 164.5 256 42.6
SMO172G0031 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 1.3e-38 164.1 111 67.6
BraA08t32730Z Brassica rapa HOM05D004056 ORTHO05D004894 1.7e-38 163.7 207 49.8
Ca_03473_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 1.4e-37 160.6 239 46.4
unitig_749.g13591 Utricularia gibba HOM05D004056 ORTHO05D004894 1.4e-37 160.6 144 61.1
AT4G13040 Arabidopsis thaliana HOM05D004056 ORTHO05D004894 1.9e-37 160.2 141 62.4
unitig_699.g19750 Utricularia gibba HOM05D004056 ORTHO05D004894 1.2e-36 157.5 211 47.4
Ah.08g214620 Amaranthus hybridus HOM05D004056 ORTHO05D004894 2.1e-36 156.8 191 51.8
Pp3c6_9830 Physcomitrium patens HOM05D004056 ORTHO05D004894 1.8e-35 153.7 116 66.4
Pp3c5_19550 Physcomitrium patens HOM05D004056 ORTHO05D004894 7.4e-34 148.3 126 62.7
THA.LOC104808796 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 4.5e-31 139.0 233 43.3
ECA236G1380 Erigeron canadensis HOM05D004056 ORTHO05D004894 8.5e-30 134.8 123 61.0
C08p08770 Brassica napus HOM05D004056 ORTHO05D004894 2.5e-29 133.3 85 74.1
BolC8t47724H Brassica oleracea HOM05D004056 ORTHO05D004894 2.5e-29 133.3 85 74.1
Psat4g203800 Pisum sativum HOM05D004056 ORTHO05D004894 2.3e-27 126.7 155 56.1
SMO361G0763 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 8.8e-27 124.8 144 50.0
SGA_v2.0_scaffold6G03510 Striga asiatica HOM05D004056 ORTHO05D004894 9.7e-26 121.3 105 63.8
HanXRQChr08g0235681 Helianthus annuus HOM05D004056 ORTHO05D004894 1.7e-25 120.6 81 70.4
CSS0045016 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000018 2.2e-22 110.2 163 42.3
Carub.0007s2973 Capsella rubella HOM05D004056 ORTHO05D004894 2.9e-22 109.8 169 45.0
CSS0004822 Camellia sinensis var. sinensis HOM05D004056 ORTHO05D004894 3.0e-19 99.8 90 61.1
HPP92_024205 Vanilla planifolia HOM05D004056 ORTHO05D004894 1.4e-16 90.9 224 34.8
CBR_g38383 Chara braunii HOM05D004056 ORTHO05D004894 2.2e-14 83.6 209 30.6
Pp3c4_8660 Physcomitrium patens HOM05D004056 ORTHO05D004504 4.8e-09 65.9 79 43.0
RcHm_v2.0_Chr3g0472871 Rosa chinensis HOM05D004056 ORTHO05D004894 4.8e-09 65.9 40 72.5
Pp3c13_22780 Physcomitrium patens HOM05D004056 ORTHO05D004504 1.4e-08 64.3 101 37.6
HanXRQChr12g0358981 Helianthus annuus HOM05D004056 ORTHO05D004894 2.7e-07 60.1 43 62.8


User provided reference genes

Program Settings