Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy573s001 Aquilegia oxysepala HOM05D000814 ORTHO05D005211 9.1e-84 313.5 160 100.0
Aqoxy5G03851 Aquilegia oxysepala HOM05D000814 ORTHO05D005211 1.4e-63 246.5 146 84.9
Nn6g33916 Nelumbo nucifera HOM05D000814 ORTHO05D005211 1.2e-19 100.5 128 46.1
Atru.chr9.1292 Acer truncatum HOM05D000814 ORTHO05D005211 4.6e-19 98.6 125 41.6
TAR375G0084 Trochodendron aralioides HOM05D000814 ORTHO05D005211 2.8e-16 89.4 101 49.5
Ciclev10020521m.g Citrus clementina HOM05D000814 ORTHO05D005211 8.2e-16 87.8 129 43.4
CSS0027660 Camellia sinensis var. sinensis HOM05D000814 ORTHO05D005211 5.3e-15 85.1 91 54.9
CSS0045982 Camellia sinensis var. sinensis HOM05D000814 ORTHO05D005211 5.3e-15 85.1 91 54.9
Hma1.2p1_1136F.1_g260500 Hydrangea macrophylla HOM05D000814 ORTHO05D005211 9.0e-15 84.3 111 48.6
Duzib084G0292 Durio zibethinus HOM05D000814 ORTHO05D005211 1.5e-14 83.6 122 44.3
PSO063G2296 Papaver somniferum HOM05D000814 ORTHO05D005211 1.5e-14 83.6 134 37.3
PSO782G1197 Papaver somniferum HOM05D000814 ORTHO05D005211 1.5e-14 83.6 134 37.3
QL12p011702 Quercus lobata HOM05D000814 ORTHO05D005211 2.0e-14 83.2 99 51.5
Potri.001G156700 Populus trichocarpa HOM05D000814 ORTHO05D005211 3.4e-14 82.4 103 51.5
CiPaw.11G080500 Carya illinoinensis HOM05D000814 ORTHO05D005211 7.6e-14 81.3 87 51.7
Gohir.D08G187600 Gossypium hirsutum HOM05D000814 ORTHO05D005211 1.3e-13 80.5 120 40.8
Prupe.5G067200 Prunus persica HOM05D000814 ORTHO05D005211 1.3e-13 80.5 140 37.9
Potri.003G077900 Populus trichocarpa HOM05D000814 ORTHO05D005211 2.9e-13 79.3 74 60.8
Sabra03G0048300 Salix brachista HOM05D000814 ORTHO05D005211 3.8e-13 79.0 75 62.7
COL.COLO4_37152 Corchorus olitorius HOM05D000814 ORTHO05D005211 4.9e-13 78.6 122 41.0
Gorai.004G197300 Gossypium raimondii HOM05D000814 ORTHO05D005211 4.9e-13 78.6 120 40.8
MD06G1056800 Malus domestica HOM05D000814 ORTHO05D005211 4.9e-13 78.6 141 38.3
Haze_07899 Corylus avellana HOM05D000814 ORTHO05D005211 1.4e-12 77.0 91 50.5
Dinv39158 Davidia involucrata HOM05D000814 ORTHO05D005211 1.4e-12 77.0 78 52.6
Gohir.A08G169200 Gossypium hirsutum HOM05D000814 ORTHO05D005211 1.9e-12 76.6 120 40.0
Thecc.03G249400 Theobroma cacao HOM05D000814 ORTHO05D005211 1.9e-12 76.6 110 43.6
Lj4g0027875 Lotus japonicus HOM05D000814 ORTHO05D005211 3.2e-12 75.9 89 50.6
Sopen08g026980 Solanum pennellii HOM05D000814 ORTHO05D005211 5.5e-12 75.1 93 47.3
PGSC0003DMG400004767 Solanum tuberosum HOM05D000814 ORTHO05D005211 5.5e-12 75.1 93 46.2
Duzib205G0663 Durio zibethinus HOM05D000814 ORTHO05D005211 7.1e-12 74.7 120 40.0
Cfa012735 Carpinus fangiana HOM05D000814 ORTHO05D005211 9.3e-12 74.3 96 49.0
Manes.02G040900 Manihot esculenta HOM05D000814 ORTHO05D005211 1.2e-11 73.9 123 39.0
Solyc08g078500.3 Solanum lycopersicum HOM05D000814 ORTHO05D005211 1.2e-11 73.9 93 46.2
Dinv21646 Davidia involucrata HOM05D000814 ORTHO05D005211 1.6e-11 73.6 71 59.2
Rhsim11G0023800 Rhododendron simsii HOM05D000814 ORTHO05D005211 1.6e-11 73.6 88 48.9
Manes.01G081800 Manihot esculenta HOM05D000814 ORTHO05D005211 2.1e-11 73.2 127 35.4
CAN.G1058.47 Capsicum annuum HOM05D000814 ORTHO05D005211 2.7e-11 72.8 102 43.1
Duzib068G1367 Durio zibethinus HOM05D000814 ORTHO05D005211 2.7e-11 72.8 81 54.3
Cc08_g12270 Coffea canephora HOM05D000814 ORTHO05D005211 3.5e-11 72.4 97 41.2
Sabra01G0134500 Salix brachista HOM05D000814 ORTHO05D005211 3.5e-11 72.4 86 51.2
Sed0013197 Sechium edule HOM05D000814 ORTHO05D005211 4.6e-11 72.0 91 49.5
arahy.Tifrunner.gnm1.ann1.2V173I Arachis hypogaea HOM05D000814 ORTHO05D005211 6.1e-11 71.6 102 42.2
Carub.0007s2406 Capsella rubella HOM05D000814 ORTHO05D005211 6.1e-11 71.6 100 46.0
vmacro00194 Vaccinium macrocarpon HOM05D000814 ORTHO05D005211 7.9e-11 71.2 90 47.8
arahy.Tifrunner.gnm1.ann1.EJ5RI6 Arachis hypogaea HOM05D000814 ORTHO05D005211 1.0e-10 70.9 90 46.7
Glyma.17G142900 Glycine max HOM05D000814 ORTHO05D005211 1.3e-10 70.5 87 48.3
Sc01g0008350 Simmondsia chinensis HOM05D000814 ORTHO05D005211 1.3e-10 70.5 74 56.8
Lalb_Chr16g0379521 Lupinus albus HOM05D000814 ORTHO05D005211 1.8e-10 70.1 92 45.7
Ah.12g054220 Amaranthus hybridus HOM05D000814 ORTHO05D005211 2.3e-10 69.7 92 48.9
Nitab4.5_0002289g0060 Nicotiana tabacum HOM05D000814 ORTHO05D005211 2.3e-10 69.7 92 46.7
EL10Ac5g12380 Beta vulgaris HOM05D000814 ORTHO05D005211 3.0e-10 69.3 94 46.8
TWI60G1470 Tripterygium wilfordii HOM05D000814 ORTHO05D005211 3.0e-10 69.3 124 37.9
FAN13G2837 Fragaria x ananassa HOM05D000814 ORTHO05D005211 3.9e-10 68.9 68 57.4
Glyma.05G060600 Glycine max HOM05D000814 ORTHO05D005211 3.9e-10 68.9 88 46.6
Sp2g12150 Schrenkiella parvula HOM05D000814 ORTHO05D005211 3.9e-10 68.9 137 37.2
Actinidia14418 Actinidia chinensis HOM05D000814 ORTHO05D005211 5.1e-10 68.6 90 48.9
FAN18G3684 Fragaria x ananassa HOM05D000814 ORTHO05D005211 5.1e-10 68.6 68 57.4
CANSAT21G0925 Cannabis sativa HOM05D000814 ORTHO05D005211 6.7e-10 68.2 62 59.7
AUR62007101 Chenopodium quinoa HOM05D000814 ORTHO05D005211 6.7e-10 68.2 99 45.5
MELO3C005525.2 Cucumis melo HOM05D000814 ORTHO05D005211 6.7e-10 68.2 78 48.7
FvH4_5g19120 Fragaria vesca HOM05D000814 ORTHO05D005211 6.7e-10 68.2 68 57.4
FAN04G0530 Fragaria x ananassa HOM05D000814 ORTHO05D005211 6.7e-10 68.2 68 57.4
Nitab4.5_0001381g0180 Nicotiana tabacum HOM05D000814 ORTHO05D005211 6.7e-10 68.2 92 46.7
Carub.0008s0034 Capsella rubella HOM05D000814 ORTHO05D005211 8.7e-10 67.8 96 46.9
AT5G47440 Arabidopsis thaliana HOM05D000814 ORTHO05D005211 1.5e-09 67.0 99 47.5
CARHR223960 Cardamine hirsuta HOM05D000814 ORTHO05D005211 1.5e-09 67.0 137 38.0
AT4G17350 Arabidopsis thaliana HOM05D000814 ORTHO05D005211 1.9e-09 66.6 138 37.7
CsaV3_5G004300 Cucumis sativus L. HOM05D000814 ORTHO05D005211 1.9e-09 66.6 98 44.9
Lalb_Chr16g0386761 Lupinus albus HOM05D000814 ORTHO05D005211 1.9e-09 66.6 90 44.4
RcHm_v2.0_Chr7g0203601 Rosa chinensis HOM05D000814 ORTHO05D005211 1.9e-09 66.6 76 52.6
CARHR173930 Cardamine hirsuta HOM05D000814 ORTHO05D005211 2.5e-09 66.2 137 35.0
Cpa.g.sc29.175 Carica papaya HOM05D000814 ORTHO05D005211 2.5e-09 66.2 88 50.0
Eucgr.D02093 Eucalyptus grandis HOM05D000814 ORTHO05D005211 3.3e-09 65.9 79 49.4
Aa31LG6G90 Aethionema arabicum HOM05D000814 ORTHO05D005211 4.3e-09 65.5 118 38.1
AL8G10590 Arabidopsis lyrata HOM05D000814 ORTHO05D005211 4.3e-09 65.5 91 49.5
BcaC06g31387 Brassica carinata HOM05D000814 ORTHO05D005211 4.3e-09 65.5 119 41.2
Aa31sc265G40 Aethionema arabicum HOM05D000814 ORTHO05D005211 5.7e-09 65.1 92 46.7
PGR031G1372 Punica granatum HOM05D000814 ORTHO05D005211 5.7e-09 65.1 102 46.1
VMungo1215G2706 Vigna mungo HOM05D000814 ORTHO05D005211 5.7e-09 65.1 72 50.0
Phvul.002G057300 Phaseolus vulgaris HOM05D000814 ORTHO05D005211 7.4e-09 64.7 85 48.2
Hund11603 Selenicereus undatus HOM05D000814 ORTHO05D005211 7.4e-09 64.7 119 44.5
BolC7t45378H Brassica oleracea HOM05D006567 ORTHO05D009430 1.3e-08 63.9 131 35.9
AL7G37360 Arabidopsis lyrata HOM05D000814 ORTHO05D005211 1.6e-08 63.5 137 36.5
BcaNung00099 Brassica carinata HOM05D000814 ORTHO05D005211 1.6e-08 63.5 97 42.3
Gohir.A03G007700 Gossypium hirsutum HOM05D000814 ORTHO05D005211 1.6e-08 63.5 122 35.2
Sp7g16830 Schrenkiella parvula HOM05D000814 ORTHO05D005211 1.6e-08 63.5 98 44.9
BcaC06g34253 Brassica carinata HOM05D000814 ORTHO05D005211 2.2e-08 63.2 136 34.6
Thhalv10025351m.g Eutrema salsugineum HOM05D000814 ORTHO05D005211 2.2e-08 63.2 97 43.3
Actinidia02142 Actinidia chinensis HOM05D000814 ORTHO05D005211 3.7e-08 62.4 40 77.5
Glyma.11G034400 Glycine max HOM05D000814 ORTHO05D005211 3.7e-08 62.4 91 45.1
Gorai.003G171900 Gossypium raimondii HOM05D000814 ORTHO05D005211 3.7e-08 62.4 124 33.1
BcaC06g33543 Brassica carinata HOM05D000814 ORTHO05D005211 4.8e-08 62.0 73 49.3
BcaNung03467 Brassica carinata HOM05D000814 ORTHO05D005211 4.8e-08 62.0 73 49.3
C07p48710 Brassica napus HOM05D000814 ORTHO05D005211 4.8e-08 62.0 73 49.3
Glyma.01G207900 Glycine max HOM05D000814 ORTHO05D005211 4.8e-08 62.0 86 44.2
Gohir.D03G163300 Gossypium hirsutum HOM05D000814 ORTHO05D005211 4.8e-08 62.0 124 33.1
BolC7t43650H Brassica oleracea HOM05D000814 ORTHO05D005211 6.3e-08 61.6 111 36.9
BcaC09g50465 Brassica carinata HOM05D000814 ORTHO05D005211 8.2e-08 61.2 97 43.3
A03p50390 Brassica napus HOM05D006567 ORTHO05D009430 8.2e-08 61.2 68 52.9
C01p25120 Brassica napus HOM05D000814 ORTHO05D005211 8.2e-08 61.2 97 43.3
Thhalv10000905m.g Eutrema salsugineum HOM05D000814 ORTHO05D005211 8.2e-08 61.2 74 48.6
C07p31060 Brassica napus HOM05D000814 ORTHO05D005211 1.1e-07 60.8 137 33.6
Lj2A220T37 Lonicera japonica HOM05D000814 ORTHO05D005211 1.1e-07 60.8 83 48.2
Peaxi162Scf00209g00017 Petunia axillaris HOM05D000814 ORTHO05D005211 1.1e-07 60.8 78 43.6
A01p20020 Brassica napus HOM05D000814 ORTHO05D005211 1.4e-07 60.5 73 49.3
BolC1t02464H Brassica oleracea HOM05D000814 ORTHO05D005211 1.4e-07 60.5 69 49.3
BraA01t01925Z Brassica rapa HOM05D000814 ORTHO05D005211 1.4e-07 60.5 73 49.3
Hund14569 Selenicereus undatus HOM05D000814 ORTHO05D005211 1.4e-07 60.5 111 40.5
SEGI_01770 Sequoiadendron giganteum HOM05D000814 ORTHO05D001161 1.4e-07 60.5 106 40.6
THA.LOC104806665 Tarenaya hassleriana HOM05D000814 ORTHO05D005211 1.4e-07 60.5 75 49.3
BraA03t14129Z Brassica rapa HOM05D006567 ORTHO05D009430 1.8e-07 60.1 68 51.5
Oeu020435.1 Olea europaea HOM05D000814 ORTHO05D005211 1.8e-07 60.1 70 44.3
arahy.Tifrunner.gnm1.ann1.3524WN Arachis hypogaea HOM05D000814 ORTHO05D005211 2.4e-07 59.7 98 39.8
arahy.Tifrunner.gnm1.ann1.E6X463 Arachis hypogaea HOM05D000814 ORTHO05D005211 2.4e-07 59.7 98 39.8
Actinidia28208 Actinidia chinensis HOM05D000814 ORTHO05D005211 5.3e-07 58.5 69 44.9
arahy.Tifrunner.gnm1.ann1.L8S3TD Arachis hypogaea HOM05D000814 ORTHO05D005211 5.3e-07 58.5 98 39.8
HPP92_007437 Vanilla planifolia HOM05D000814 ORTHO05D005211 5.3e-07 58.5 54 57.4
SalBow6G5366 Salvia bowleyana HOM05D000814 ORTHO05D005211 6.9e-07 58.2 77 49.4
SMO115G0016 Selaginella moellendorffii HOM05D000814 ORTHO05D001161 6.9e-07 58.2 67 47.8
MBI01_g06183_MAGBIO Magnolia biondii HOM05D000814 ORTHO05D001161 1.2e-06 57.4 54 51.9
BraA06t27378Z Brassica rapa HOM05D000814 ORTHO05D005211 1.5e-06 57.0 138 32.6
SMO166G0021 Selaginella moellendorffii HOM05D000814 ORTHO05D001161 1.5e-06 57.0 56 53.6
MSTRG.24726 Avicennia marina HOM05D000814 ORTHO05D001161 2.0e-06 56.6 42 66.7
ClCG01G004130 Citrullus lanatus HOM05D000814 ORTHO05D005211 2.0e-06 56.6 86 44.2
HanXRQChr17g0549341 Helianthus annuus HOM05D000814 ORTHO05D005211 2.0e-06 56.6 42 69.0
Nitab4.5_0000090g0360 Nicotiana tabacum HOM05D000814 ORTHO05D001161 2.0e-06 56.6 43 65.1
TAR362G1125 Trochodendron aralioides HOM05D000814 ORTHO05D001161 2.0e-06 56.6 45 64.4
A06p45090 Brassica napus HOM05D000814 ORTHO05D005211 2.6e-06 56.2 136 33.1
Ciclev10004842m.g Citrus clementina HOM05D000814 ORTHO05D001161 2.6e-06 56.2 50 56.0
Migut.A01115 Erythranthe guttata HOM05D000814 ORTHO05D005211 2.6e-06 56.2 64 48.4
Sabra10G0060800 Salix brachista HOM05D000814 ORTHO05D001161 2.6e-06 56.2 46 58.7
Prupe.5G067500 Prunus persica HOM05D000814 ORTHO05D005211 3.4e-06 55.8 140 32.9
Solyc08g066860.2 Solanum lycopersicum HOM05D000814 ORTHO05D001161 3.4e-06 55.8 82 40.2
MSTRG.21872 Avicennia marina HOM05D000814 ORTHO05D001161 4.5e-06 55.5 40 65.0
CiPaw.02G121700 Carya illinoinensis HOM05D000814 ORTHO05D001161 4.5e-06 55.5 61 54.1
HanXRQChr03g0071631 Helianthus annuus HOM05D000814 ORTHO05D001161 4.5e-06 55.5 63 49.2
Manes.15G032400 Manihot esculenta HOM05D000814 ORTHO05D001161 4.5e-06 55.5 55 50.9
Solyc09g082580.4 Solanum lycopersicum HOM05D000814 ORTHO05D001161 4.5e-06 55.5 45 62.2
Sopen08g020840 Solanum pennellii HOM05D000814 ORTHO05D001161 4.5e-06 55.5 82 40.2
DCAR_004964 Daucus carota HOM05D000814 ORTHO05D005211 5.9e-06 55.1 125 32.0
SEGI_32936 Sequoiadendron giganteum HOM05D000814 ORTHO05D001161 5.9e-06 55.1 57 52.6
Sopen09g031440 Solanum pennellii HOM05D000814 ORTHO05D001161 5.9e-06 55.1 43 65.1
PGSC0003DMG400006453 Solanum tuberosum HOM05D000814 ORTHO05D001161 5.9e-06 55.1 43 65.1
TPR.G18142 Trifolium pratense HOM05D000814 ORTHO05D005211 5.9e-06 55.1 89 37.1
ECA233G5265 Erigeron canadensis HOM05D000814 ORTHO05D005211 7.7e-06 54.7 43 67.4
Peaxi162Scf00316g00086 Petunia axillaris HOM05D000814 ORTHO05D001161 7.7e-06 54.7 55 52.7
vmacro11065 Vaccinium macrocarpon HOM05D000814 ORTHO05D001161 7.7e-06 54.7 80 43.8
Ah.16g105660 Amaranthus hybridus HOM05D000814 ORTHO05D001161 1.0e-05 54.3 69 44.9
Peaxi162Scf00161g00511 Petunia axillaris HOM05D000814 ORTHO05D001161 1.0e-05 54.3 95 36.8
Pp3c12_26210 Physcomitrium patens HOM05D000814 ORTHO05D001161 1.0e-05 54.3 84 36.9
Potri.010G082400 Populus trichocarpa HOM05D000814 ORTHO05D001161 1.0e-05 54.3 43 60.5
RcHm_v2.0_Chr4g0387611 Rosa chinensis HOM05D000814 ORTHO05D001161 1.0e-05 54.3 43 65.1


User provided reference genes

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