Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy4G03234 Aquilegia oxysepala HOM05D006884 ORTHO05D008604 0.0e+00 1327.4 692 100.0
TAR369G0310 Trochodendron aralioides HOM05D006884 ORTHO05D008604 3.6e-278 961.4 689 73.4
QL01p023227 Quercus lobata HOM05D006884 ORTHO05D008604 4.1e-266 921.4 684 70.8
Cfa011353 Carpinus fangiana HOM05D006884 ORTHO05D008604 5.1e-264 914.4 692 69.4
CiPaw.13G108400 Carya illinoinensis HOM05D006884 ORTHO05D008604 6.0e-257 891.0 692 67.1
Haze_23897 Corylus avellana HOM05D006884 ORTHO05D008604 7.8e-257 890.6 736 64.9
COL.COLO4_05186 Corchorus olitorius HOM05D006884 ORTHO05D008604 1.5e-255 886.3 692 67.6
GSVIVG01025156001 Vitis vinifera HOM05D006884 ORTHO05D008604 1.5e-255 886.3 692 68.1
Atru.chr3.3680 Acer truncatum HOM05D006884 ORTHO05D008604 7.3e-255 884.0 681 67.8
Duzib168G2304 Durio zibethinus HOM05D006884 ORTHO05D008604 9.6e-255 883.6 683 68.2
Hma1.2p1_0071F.1_g038150 Hydrangea macrophylla HOM05D006884 ORTHO05D008604 2.9e-251 872.1 693 66.5
Prupe.6G097500 Prunus persica HOM05D006884 ORTHO05D008604 1.0e-248 863.6 682 68.5
CSS0004159 Camellia sinensis var. sinensis HOM05D006884 ORTHO05D008604 3.6e-246 855.1 682 66.1
CANSAT54G0393 Cannabis sativa HOM05D006884 ORTHO05D008604 5.8e-244 847.8 691 66.0
PSO063G0254 Papaver somniferum HOM05D006884 ORTHO05D008604 1.4e-242 843.2 694 65.3
Manes.04G024400 Manihot esculenta HOM05D006884 ORTHO05D008604 4.2e-242 841.6 690 64.5
Actinidia07119 Actinidia chinensis HOM05D006884 ORTHO05D008604 4.6e-241 838.2 686 64.1
Gorai.013G255800 Gossypium raimondii HOM05D006884 ORTHO05D008604 1.3e-240 836.6 692 63.0
Gohir.D13G225000 Gossypium hirsutum HOM05D006884 ORTHO05D008604 3.9e-240 835.1 692 63.0
Gohir.A13G221000 Gossypium hirsutum HOM05D006884 ORTHO05D008604 1.1e-239 833.6 692 62.4
TWI38G0581 Tripterygium wilfordii HOM05D006884 ORTHO05D008604 5.6e-239 831.2 693 63.6
Ciclev10027944m.g Citrus clementina HOM05D006884 ORTHO05D008604 3.7e-238 828.6 677 66.0
Lj2C1032T7 Lonicera japonica HOM05D006884 ORTHO05D008604 2.4e-237 825.9 721 62.4
Eucgr.J00944 Eucalyptus grandis HOM05D006884 ORTHO05D008604 1.2e-236 823.5 694 63.8
RcHm_v2.0_Chr5g0060051 Rosa chinensis HOM05D006884 ORTHO05D008604 2.6e-236 822.4 687 65.1
vmacro03180 Vaccinium macrocarpon HOM05D006884 ORTHO05D008604 2.6e-236 822.4 689 63.9
ClCG03G002300 Citrullus lanatus HOM05D006884 ORTHO05D008604 1.7e-235 819.7 689 62.6
PGR119G0543 Punica granatum HOM05D006884 ORTHO05D008604 4.9e-235 818.1 688 64.2
arahy.Tifrunner.gnm1.ann1.AY6ICH Arachis hypogaea HOM05D006884 ORTHO05D008604 9.3e-234 813.9 683 63.5
DCAR_018827 Daucus carota HOM05D006884 ORTHO05D008604 1.2e-233 813.5 683 62.7
MELO3C005036.2 Cucumis melo HOM05D006884 ORTHO05D008604 1.3e-232 810.1 683 62.5
Oeu005901.1 Olea europaea HOM05D006884 ORTHO05D008604 8.7e-232 807.4 711 61.9
TWI38G2405 Tripterygium wilfordii HOM05D006884 ORTHO05D008604 8.7e-232 807.4 694 62.8
Glyma.11G154214 Glycine max HOM05D006884 ORTHO05D008604 9.6e-231 803.9 689 62.8
Cc01_g11430 Coffea canephora HOM05D006884 ORTHO05D008604 1.6e-230 803.1 685 62.2
FvH4_3g32920 Fragaria vesca HOM05D006884 ORTHO05D008604 6.3e-230 801.2 687 63.5
Phvul.011G073400 Phaseolus vulgaris HOM05D006884 ORTHO05D008604 1.2e-228 797.0 685 62.9
Lalb_Chr01g0004191 Lupinus albus HOM05D006884 ORTHO05D008604 1.5e-228 796.6 684 62.0
Cpa.g.sc139.78 Carica papaya HOM05D006884 ORTHO05D008604 2.6e-228 795.8 604 68.0
FAN11G3181 Fragaria x ananassa HOM05D006884 ORTHO05D008604 3.4e-228 795.4 687 63.3
Psat7g223440 Pisum sativum HOM05D006884 ORTHO05D008604 3.4e-228 795.4 684 61.8
Lj3g0026527 Lotus japonicus HOM05D006884 ORTHO05D008604 4.5e-228 795.0 682 62.3
Solyc11g069170.2 Solanum lycopersicum HOM05D006884 ORTHO05D008604 5.0e-227 791.6 688 61.3
Medtr4g060500 Medicago truncatula HOM05D006884 ORTHO05D008604 8.4e-227 790.8 687 61.1
Sopen11g027910 Solanum pennellii HOM05D006884 ORTHO05D008604 4.2e-226 788.5 688 61.2
VMungo1127G0767 Vigna mungo HOM05D006884 ORTHO05D008604 5.5e-226 788.1 680 62.6
Potri.009G014900 Populus trichocarpa HOM05D006884 ORTHO05D008604 3.5e-225 785.4 684 62.4
FAN25G2544 Fragaria x ananassa HOM05D006884 ORTHO05D008604 1.8e-224 783.1 685 62.2
TPR.G15554 Trifolium pratense HOM05D006884 ORTHO05D008604 2.3e-224 782.7 686 61.7
Peaxi162Scf00351g00322 Petunia axillaris HOM05D006884 ORTHO05D008604 3.0e-224 782.3 705 59.9
MSTRG.12324 Avicennia marina HOM05D006884 ORTHO05D008604 2.4e-221 772.7 691 59.5
PGSC0003DMG400008066 Solanum tuberosum HOM05D006884 ORTHO05D008604 3.1e-221 772.3 729 57.6
Sed0010984 Sechium edule HOM05D006884 ORTHO05D008604 2.0e-220 769.6 694 59.2
PSO339G1719 Papaver somniferum HOM05D006884 ORTHO05D008604 2.6e-220 769.2 603 66.8
ATR0759G051 Amborella trichopoda HOM05D006884 ORTHO05D008604 7.7e-220 767.7 697 60.8
MBI14_g07928_MAGBIO Magnolia biondii HOM05D006884 ORTHO05D008604 2.9e-219 765.8 610 67.7
Migut.N02612 Erythranthe guttata HOM05D006884 ORTHO05D008604 1.0e-216 757.3 690 58.1
THA.LOC104815748 Tarenaya hassleriana HOM05D006884 ORTHO05D008604 8.8e-216 754.2 691 58.8
HanXRQChr07g0197411 Helianthus annuus HOM05D006884 ORTHO05D008604 3.4e-212 742.3 700 58.1
Nitab4.5_0000999g0100 Nicotiana tabacum HOM05D006884 ORTHO05D008604 3.4e-212 742.3 732 56.4
Thhalv10006976m.g Eutrema salsugineum HOM05D006884 ORTHO05D008604 2.9e-211 739.2 691 59.2
Carub.0001s0732 Capsella rubella HOM05D006884 ORTHO05D008604 6.5e-211 738.0 691 58.9
AT1G07970 Arabidopsis thaliana HOM05D006884 ORTHO05D008604 1.2e-209 733.8 693 58.9
CARHR007750 Cardamine hirsuta HOM05D006884 ORTHO05D008604 2.7e-209 732.6 699 58.4
Thecc.09G259000 Theobroma cacao HOM05D006884 ORTHO05D008604 6.1e-209 731.5 487 74.3
ECA238G4524 Erigeron canadensis HOM05D006884 ORTHO05D008604 1.4e-208 730.3 668 58.5
C05p05970 Brassica napus HOM05D006884 ORTHO05D008604 7.4e-207 724.5 688 57.8
Nitab4.5_0002186g0020 Nicotiana tabacum HOM05D006884 ORTHO05D008604 9.7e-207 724.2 651 60.5
BolC5t29358H Brassica oleracea HOM05D003203 ORTHO05D003526 1.7e-206 723.4 688 57.8
Sc06g0010010 Simmondsia chinensis HOM05D006884 ORTHO05D008604 3.7e-206 722.2 683 57.5
arahy.Tifrunner.gnm1.ann1.H1W27A Arachis hypogaea HOM05D006884 ORTHO05D008604 1.1e-205 720.7 606 63.5
AL1G18300 Arabidopsis lyrata HOM05D006884 ORTHO05D008604 1.8e-205 719.9 691 58.6
A06p05030 Brassica napus HOM05D006884 ORTHO05D008604 7.0e-205 718.0 689 57.5
BraA06t23709Z Brassica rapa HOM05D006884 ORTHO05D008604 1.5e-202 710.3 689 56.7
Ca_19247_v3 Cicer arietinum L. HOM05D006884 ORTHO05D008604 2.5e-202 709.5 687 58.1
Hund10472 Selenicereus undatus HOM05D006884 ORTHO05D008604 2.5e-202 709.5 691 57.5
SGA_v2.0_scaffold2G00907 Striga asiatica HOM05D006884 ORTHO05D008604 4.2e-202 708.8 649 61.0
Aa31LG8G13130 Aethionema arabicum HOM05D006884 ORTHO05D008604 2.3e-200 703.0 686 57.4
Lsat_1_v5_gn_2_97900 Lactuca sativa HOM05D006884 ORTHO05D008604 8.8e-200 701.0 699 55.1
BcaB02g06701 Brassica carinata HOM05D006884 ORTHO05D008604 1.1e-199 700.7 672 58.6
SalBow3G0672 Salvia bowleyana HOM05D006884 ORTHO05D008604 7.5e-199 698.0 695 56.1
AUR62025009 Chenopodium quinoa HOM05D006884 ORTHO05D008604 3.7e-198 695.7 689 56.6
AUR62006527 Chenopodium quinoa HOM05D006884 ORTHO05D008604 5.0e-195 685.3 682 55.4
BcaC05g24709 Brassica carinata HOM05D006884 ORTHO05D008604 5.2e-192 675.2 686 55.1
SEGI_12216 Sequoiadendron giganteum HOM05D006884 ORTHO05D008604 1.2e-191 674.1 709 53.6
CDE09G0273 Ceratophyllum demersum HOM05D006884 ORTHO05D008604 1.5e-191 673.7 656 57.2
HPP92_025089 Vanilla planifolia HOM05D006884 ORTHO05D008604 1.5e-191 673.7 677 55.2
Zm00001eb397080 Zea mays HOM05D006884 ORTHO05D008604 2.2e-190 669.8 679 54.5
Os03g0288800 Oryza sativa ssp. japonica HOM05D006884 ORTHO05D008604 1.1e-189 667.5 685 54.5
Sabra09G0009400 Salix brachista HOM05D006884 ORTHO05D008604 7.0e-189 664.8 505 68.3
CAN.G631.5 Capsicum annuum HOM05D006884 ORTHO05D008604 2.6e-183 646.4 624 56.1
CsaV3_1G012990 Cucumis sativus L. HOM05D006884 ORTHO05D008604 4.1e-181 639.0 590 59.0
Rhsim08G0043200 Rhododendron simsii HOM05D006884 ORTHO05D008604 1.1e-165 587.8 663 52.2
Sp4g05030 Schrenkiella parvula HOM05D006884 ORTHO05D008604 8.6e-155 551.6 686 48.3
unitig_61.g26171 Utricularia gibba HOM05D006884 ORTHO05D008604 2.4e-141 506.9 615 49.4
Mapoly0043s0112 Marchantia polymorpha HOM05D006884 ORTHO05D008604 2.1e-140 503.8 711 45.3
SMO364G0331 Selaginella moellendorffii HOM05D006884 ORTHO05D008604 4.9e-134 482.6 470 53.8
Actinidia24083 Actinidia chinensis HOM05D006884 ORTHO05D008604 6.0e-132 475.7 299 75.3
arahy.Tifrunner.gnm1.ann1.REDW7M Arachis hypogaea HOM05D006884 ORTHO05D008604 4.3e-122 443.0 275 77.1
Pp3c12_22070 Physcomitrium patens HOM05D006884 ORTHO05D008604 3.1e-120 436.8 707 42.0
BcaB07g34161 Brassica carinata HOM05D006884 ORTHO05D008604 1.2e-116 424.9 357 58.8
Glyma.12G071233 Glycine max HOM05D006884 ORTHO05D008604 2.0e-66 258.1 218 61.9
Actinidia24084 Actinidia chinensis HOM05D006884 ORTHO05D008604 3.1e-51 207.6 337 42.7
Nn1g02428 Nelumbo nucifera HOM05D006884 ORTHO05D008604 7.8e-47 193.0 104 86.5
Nn1g02077 Nelumbo nucifera HOM05D006884 ORTHO05D008604 8.6e-46 189.5 105 83.8
Nn3g17897 Nelumbo nucifera HOM05D006884 ORTHO05D008604 7.3e-45 186.4 122 73.0
Nn4g22222 Nelumbo nucifera HOM05D006884 ORTHO05D008604 4.7e-44 183.7 101 84.2
SEGI_34075 Sequoiadendron giganteum HOM05D000114 ORTHO05D008604 1.1e-37 162.5 439 33.7
Nn4g22225 Nelumbo nucifera HOM05D006884 ORTHO05D008604 2.6e-34 151.4 102 71.6
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 1.9e-32 145.2 102 69.6
Nn1g05254 Nelumbo nucifera HOM05D006884 ORTHO05D008604 2.9e-17 94.7 68 69.1
Cre12.g555200 Chlamydomonas reinhardtii HOM05D006884 ORTHO05D008604 1.1e-16 92.8 326 27.9
Glyma.12G071167 Glycine max HOM05D006884 ORTHO05D008604 1.9e-16 92.0 202 39.6
Nn1g03843 Nelumbo nucifera HOM05D006884 ORTHO05D008604 1.5e-13 82.4 64 67.2
Nitab4.5_0002186g0030 Nicotiana tabacum HOM05D006884 ORTHO05D008604 1.3e-12 79.3 47 72.3
Aa31LG3G16570 Aethionema arabicum HOM05D006884 ORTHO05D008604 5.3e-11 73.9 183 30.6


User provided reference genes

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