Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy4G03224 Aquilegia oxysepala HOM05D005542 ORTHO05D006708 3.5e-126 454.9 221 100.0
TAR623G0063 Trochodendron aralioides HOM05D005542 ORTHO05D006708 1.2e-102 376.7 214 83.2
Hma1.2p1_0350F.1_g132800 Hydrangea macrophylla HOM05D005542 ORTHO05D006708 1.3e-96 356.7 219 75.8
MD12G1123000 Malus domestica HOM05D005542 ORTHO05D006708 2.9e-96 355.5 213 78.9
Cfa017517 Carpinus fangiana HOM05D005542 ORTHO05D006708 6.5e-96 354.4 219 76.7
FvH4_6g15490 Fragaria vesca HOM05D005542 ORTHO05D006708 1.9e-95 352.8 211 77.3
FAN09G2765 Fragaria x ananassa HOM05D005542 ORTHO05D006708 1.9e-95 352.8 211 77.3
RcHm_v2.0_Chr3g0468971 Rosa chinensis HOM05D005542 ORTHO05D006708 2.5e-95 352.4 210 79.0
Sed0012482 Sechium edule HOM05D005542 ORTHO05D006708 2.5e-95 352.4 212 77.4
FAN14G1906 Fragaria x ananassa HOM05D005542 ORTHO05D006708 3.2e-95 352.1 217 75.1
Potri.006G130700 Populus trichocarpa HOM05D005542 ORTHO05D006708 3.2e-95 352.1 215 76.7
Lj3P980T19 Lonicera japonica HOM05D005542 ORTHO05D006708 7.1e-95 350.9 210 76.7
Dinv37264 Davidia involucrata HOM05D005542 ORTHO05D006708 9.3e-95 350.5 218 74.8
HanXRQChr13g0399571 Helianthus annuus HOM05D005542 ORTHO05D006708 9.3e-95 350.5 219 76.3
Haze_20632 Corylus avellana HOM05D005542 ORTHO05D006708 1.2e-94 350.1 219 75.8
Prupe.6G240200 Prunus persica HOM05D005542 ORTHO05D006708 1.2e-94 350.1 216 75.9
Sed0011219 Sechium edule HOM05D005542 ORTHO05D006708 1.2e-94 350.1 212 78.3
Migut.L01666 Erythranthe guttata HOM05D005542 ORTHO05D006708 1.6e-94 349.7 220 74.5
FAN02G2564 Fragaria x ananassa HOM05D005542 ORTHO05D006708 2.7e-94 349.0 211 76.8
FAN05G5506 Fragaria x ananassa HOM05D005542 ORTHO05D006708 3.5e-94 348.6 217 74.2
Manes.08G004100 Manihot esculenta HOM05D005542 ORTHO05D006708 7.9e-94 347.4 212 76.9
TAR369G0130 Trochodendron aralioides HOM05D005542 ORTHO05D006708 5.1e-93 344.7 212 75.0
Dinv35725 Davidia involucrata HOM05D005542 ORTHO05D006708 6.7e-93 344.4 221 73.8
CANSAT80G0049 Cannabis sativa HOM05D005542 ORTHO05D006708 8.7e-93 344.0 210 76.7
MSTRG.10302 Avicennia marina HOM05D005542 ORTHO05D006708 1.1e-92 343.6 220 73.6
MSTRG.19142 Avicennia marina HOM05D005542 ORTHO05D006708 2.5e-92 342.4 219 74.4
Cc06_g03660 Coffea canephora HOM05D005542 ORTHO05D006708 1.6e-91 339.7 220 73.2
Gorai.001G248000 Gossypium raimondii HOM05D005542 ORTHO05D006708 1.6e-91 339.7 218 72.9
Sabra06G0102700 Salix brachista HOM05D005542 ORTHO05D006708 1.6e-91 339.7 212 75.0
Cfa017518 Carpinus fangiana HOM05D005542 ORTHO05D006708 2.8e-91 339.0 219 74.4
CAN.G1676.11 Capsicum annuum HOM05D005542 ORTHO05D006708 3.7e-91 338.6 210 75.7
Hma1.2p1_0111F.1_g053980 Hydrangea macrophylla HOM05D005542 ORTHO05D006708 3.7e-91 338.6 210 76.2
Sabra16G0093000 Salix brachista HOM05D005542 ORTHO05D006708 8.2e-91 337.4 212 74.5
Lsat_1_v5_gn_6_30080 Lactuca sativa HOM05D005542 ORTHO05D006708 2.4e-90 335.9 210 75.7
SGA_v2.0_scaffold94G28671 Striga asiatica HOM05D005542 ORTHO05D006708 5.3e-90 334.7 219 72.1
Potri.016G086700 Populus trichocarpa HOM05D005542 ORTHO05D006708 1.2e-89 333.6 212 75.0
MBI15_g16380_MAGBIO Magnolia biondii HOM05D005542 ORTHO05D006708 3.8e-88 328.6 210 74.3
THA.LOC104823241 Tarenaya hassleriana HOM05D005542 ORTHO05D006708 3.2e-87 325.5 216 72.2
Manes.08G004101 Manihot esculenta HOM05D005542 ORTHO05D006708 2.1e-86 322.8 212 74.1
Manes.08G004113 Manihot esculenta HOM05D005542 ORTHO05D006708 2.1e-86 322.8 212 74.1
Manes.08G004123 Manihot esculenta HOM05D005542 ORTHO05D006708 2.1e-86 322.8 212 74.1
Manes.08G004124 Manihot esculenta HOM05D005542 ORTHO05D006708 2.1e-86 322.8 212 74.1
Manes.08G004129 Manihot esculenta HOM05D005542 ORTHO05D006708 2.1e-86 322.8 212 74.1
HPP92_012051 Vanilla planifolia HOM05D005542 ORTHO05D006708 2.7e-86 322.4 217 71.9
Lsat_1_v5_gn_1_54060 Lactuca sativa HOM05D005542 ORTHO05D006708 4.6e-86 321.6 219 68.0
AL6G12370 Arabidopsis lyrata HOM05D005542 ORTHO05D006708 1.0e-85 320.5 220 68.6
Psat6g070280 Pisum sativum HOM05D005542 ORTHO05D006708 6.7e-85 317.8 218 68.3
PGR142G2113 Punica granatum HOM05D005542 ORTHO05D006708 1.1e-84 317.0 215 67.9
CSS0028203 Camellia sinensis var. sinensis HOM05D005542 ORTHO05D006708 4.3e-84 315.1 220 68.6
PSO063G7551 Papaver somniferum HOM05D005542 ORTHO05D006708 4.3e-84 315.1 212 73.1
PSO339G3338 Papaver somniferum HOM05D005542 ORTHO05D006708 4.3e-84 315.1 212 73.1
AT5G03080 Arabidopsis thaliana HOM05D005542 ORTHO05D006708 1.6e-83 313.2 220 67.3
Nn2g10693 Nelumbo nucifera HOM05D005542 ORTHO05D006708 2.8e-83 312.4 212 70.3
Nn2g10694 Nelumbo nucifera HOM05D005542 ORTHO05D006708 2.8e-83 312.4 212 70.3
BcaC06g32035 Brassica carinata HOM05D005542 ORTHO05D006708 3.7e-83 312.0 213 68.5
BolC9t60101H Brassica oleracea HOM05D005542 ORTHO05D006708 3.7e-83 312.0 213 68.5
VMungo1309G1614 Vigna mungo HOM05D005542 ORTHO05D006708 3.7e-83 312.0 212 70.8
C09p73660 Brassica napus HOM05D005542 ORTHO05D006708 4.8e-83 311.6 213 68.5
CSS0011727 Camellia sinensis var. sinensis HOM05D005542 ORTHO05D006708 6.3e-83 311.2 220 68.2
Carub.0006s0187 Capsella rubella HOM05D005542 ORTHO05D006708 6.3e-83 311.2 220 67.3
Ah.01g009250 Amaranthus hybridus HOM05D005542 ORTHO05D006708 8.2e-83 310.8 212 69.8
TPR.G30255 Trifolium pratense HOM05D005542 ORTHO05D006708 8.2e-83 310.8 217 68.7
DCAR_009281 Daucus carota HOM05D005542 ORTHO05D006708 1.1e-82 310.5 219 68.0
BcaB05g21852 Brassica carinata HOM05D005542 ORTHO05D006708 1.4e-82 310.1 210 68.6
AUR62040036 Chenopodium quinoa HOM05D005542 ORTHO05D006708 1.4e-82 310.1 218 68.3
Lj5g0010386 Lotus japonicus HOM05D005542 ORTHO05D006708 1.4e-82 310.1 212 70.3
SalBow3G3282 Salvia bowleyana HOM05D005542 ORTHO05D006708 1.8e-82 309.7 215 68.4
SalBow3G3389 Salvia bowleyana HOM05D005542 ORTHO05D006708 1.8e-82 309.7 215 68.4
Medtr1g066770 Medicago truncatula HOM05D005542 ORTHO05D006708 4.1e-82 308.5 218 68.3
AUR62042543 Chenopodium quinoa HOM05D005542 ORTHO05D006708 9.0e-82 307.4 218 67.4
unitig_26.g9217 Utricularia gibba HOM05D005542 ORTHO05D006708 9.0e-82 307.4 201 72.1
Thhalv10014320m.g Eutrema salsugineum HOM05D005542 ORTHO05D006708 1.2e-81 307.0 212 67.0
BcaC03g13032 Brassica carinata HOM05D005542 ORTHO05D006708 2.0e-81 306.2 210 68.1
THA.LOC104816326 Tarenaya hassleriana HOM05D005542 ORTHO05D006708 2.0e-81 306.2 219 68.0
C02p00780 Brassica napus HOM05D005542 ORTHO05D006708 2.6e-81 305.8 210 68.1
BolC2t06076H Brassica oleracea HOM05D005542 ORTHO05D006708 2.6e-81 305.8 210 68.1
BraA02t04743Z Brassica rapa HOM05D005542 ORTHO05D006708 5.9e-81 304.7 210 67.6
Oeu060090.1 Olea europaea HOM05D005542 ORTHO05D006708 2.2e-80 302.8 219 65.3
ATR0314G039 Amborella trichopoda HOM05D005542 ORTHO05D006708 2.9e-80 302.4 218 66.1
CARHR210250 Cardamine hirsuta HOM05D005542 ORTHO05D006708 2.9e-80 302.4 213 67.6
Cpa.g.sc174.15 Carica papaya HOM05D005542 ORTHO05D006708 1.1e-79 300.4 211 68.7
ClCG02G023990 Citrullus lanatus HOM05D005542 ORTHO05D006708 1.4e-79 300.1 212 68.9
Zm00001eb013250 Zea mays HOM05D005542 ORTHO05D006708 3.2e-79 298.9 216 66.2
CsaV3_4G023360 Cucumis sativus L. HOM05D005542 ORTHO05D006708 7.2e-79 297.7 212 67.9
HanXRQChr13g0399561 Helianthus annuus HOM05D005542 ORTHO05D006708 1.0e-77 293.9 210 67.6
QL07p045114 Quercus lobata HOM05D005542 ORTHO05D006708 1.8e-77 293.1 217 65.4
MELO3C014679.2 Cucumis melo HOM05D005542 ORTHO05D006708 2.3e-77 292.7 212 67.0
CiPaw.09G179200 Carya illinoinensis HOM05D005542 ORTHO05D006708 3.9e-77 292.0 217 65.9
Thecc.05G055500 Theobroma cacao HOM05D005542 ORTHO05D006708 3.9e-77 292.0 218 65.6
Ciclev10012685m.g Citrus clementina HOM05D005542 ORTHO05D006708 6.7e-77 291.2 209 67.0
Sopen09g002330 Solanum pennellii HOM05D005542 ORTHO05D006708 6.7e-77 291.2 210 66.7
Actinidia19704 Actinidia chinensis HOM05D005542 ORTHO05D006708 8.8e-77 290.8 183 74.3
MD04G1105500 Malus domestica HOM05D005542 ORTHO05D006708 1.1e-76 290.4 213 67.1
BcaNung06917 Brassica carinata HOM05D005542 ORTHO05D006708 2.6e-76 289.3 212 65.6
SEGI_14044 Sequoiadendron giganteum HOM05D005542 ORTHO05D006708 2.6e-76 289.3 219 61.2
Duzib128G1803 Durio zibethinus HOM05D005542 ORTHO05D006708 4.3e-76 288.5 218 64.7
Eucgr.K03216 Eucalyptus grandis HOM05D005542 ORTHO05D006708 5.7e-76 288.1 212 66.0
Os03g0288700 Oryza sativa ssp. japonica HOM05D005542 ORTHO05D006708 5.7e-76 288.1 216 64.8
Aa31LG1G21960 Aethionema arabicum HOM05D005542 ORTHO05D006708 1.7e-75 286.6 217 64.1
Gohir.D13G095800 Gossypium hirsutum HOM05D005542 ORTHO05D006708 2.2e-75 286.2 218 63.3
Solyc09g007450.3 Solanum lycopersicum HOM05D005542 ORTHO05D006708 1.8e-74 283.1 210 65.2
Sc02g0001930 Simmondsia chinensis HOM05D005542 ORTHO05D006708 2.4e-74 282.7 211 64.5
Nitab4.5_0000669g0160 Nicotiana tabacum HOM05D005542 ORTHO05D006708 9.1e-74 280.8 212 65.6
SHI12539 Sapria himalayana HOM05D005542 ORTHO05D006708 9.1e-74 280.8 210 67.6
Gohir.A13G082150 Gossypium hirsutum HOM05D005542 ORTHO05D006708 2.6e-73 279.3 218 62.4
Mapoly0060s0060 Marchantia polymorpha HOM05D005542 ORTHO05D006708 2.6e-73 279.3 210 61.9
Phvul.007G164600 Phaseolus vulgaris HOM05D005542 ORTHO05D006708 2.9e-72 275.8 212 63.2
Glyma.10G050300 Glycine max HOM05D005542 ORTHO05D006708 3.6e-70 268.9 218 60.1
HanXRQChr11g0350001 Helianthus annuus HOM05D005542 ORTHO05D006708 3.6e-70 268.9 219 60.3
Sp6g39610 Schrenkiella parvula HOM05D005542 ORTHO05D006708 3.6e-70 268.9 220 59.5
Glyma.13G137800 Glycine max HOM05D005542 ORTHO05D006708 3.9e-69 265.4 220 60.9
Oeu029419.1 Olea europaea HOM05D005542 ORTHO05D006708 8.8e-69 264.2 171 72.5
CiPaw.10G136900 Carya illinoinensis HOM05D005542 ORTHO05D006708 1.3e-67 260.4 210 58.6
Pp3c5_750 Physcomitrium patens HOM05D005542 ORTHO05D006708 2.8e-67 259.2 220 55.5
A10p32790 Brassica napus HOM05D005542 ORTHO05D006708 3.7e-67 258.8 213 58.7
BraA10t45313Z Brassica rapa HOM05D005542 ORTHO05D006708 3.7e-67 258.8 213 58.7
Pp3c16_13170 Physcomitrium patens HOM05D005542 ORTHO05D006708 4.8e-67 258.5 212 56.1
SMO367G0756 Selaginella moellendorffii HOM05D005542 ORTHO05D006708 6.3e-67 258.1 210 57.1
COL.COLO4_27064 Corchorus olitorius HOM05D005542 ORTHO05D006708 2.0e-65 253.1 170 71.8
CDE02G2407 Ceratophyllum demersum HOM05D000280 ORTHO05D000632 4.5e-65 251.9 165 72.7
PGR004G0770 Punica granatum HOM05D005542 ORTHO05D006708 5.9e-65 251.5 212 59.0
COL.COLO4_27065 Corchorus olitorius HOM05D005542 ORTHO05D006708 2.9e-64 249.2 171 69.0
Lalb_Chr21g0314711 Lupinus albus HOM05D005542 ORTHO05D006708 3.8e-64 248.8 218 57.3
Gohir.A04G076100 Gossypium hirsutum HOM05D005542 ORTHO05D006708 2.8e-59 232.6 161 70.2
Nitab4.5_0007806g0040 Nicotiana tabacum HOM05D005542 ORTHO05D006708 4.5e-57 225.3 219 52.1
Peaxi162Scf00005g04018 Petunia axillaris HOM05D005542 ORTHO05D006708 1.7e-56 223.4 218 54.6
BolC9t60096H Brassica oleracea HOM05D005542 ORTHO05D006708 2.5e-55 219.5 156 64.7
Gohir.D04G115201 Gossypium hirsutum HOM05D005542 ORTHO05D006708 7.2e-55 218.0 216 54.2
EL10Ac7g16508 Beta vulgaris HOM05D005542 ORTHO05D006708 2.1e-54 216.5 170 62.9
MD04G1102900 Malus domestica HOM05D005542 ORTHO05D006708 3.7e-51 205.7 131 74.8
Atru.chr5.2634 Acer truncatum HOM05D005542 ORTHO05D006708 7.7e-49 198.0 130 69.2
Ca_11456_v3 Cicer arietinum L. HOM05D005542 ORTHO05D006708 4.0e-45 185.7 137 65.7
Lalb_Chr06g0171481 Lupinus albus HOM05D005542 ORTHO05D006708 6.8e-45 184.9 219 47.0
Gorai.009G419800 Gossypium raimondii HOM05D005542 ORTHO05D006708 4.4e-44 182.2 218 47.7
VMungo0720G1693 Vigna mungo HOM05D005542 ORTHO05D006708 1.4e-37 160.6 131 59.5
Rhsim04G0149700 Rhododendron simsii HOM05D005542 ORTHO05D006708 4.6e-33 145.6 90 75.6
ECA233G4004 Erigeron canadensis HOM05D005542 ORTHO05D006708 7.3e-31 138.3 90 74.4
Cpa.g.c48297 Carica papaya HOM05D005542 ORTHO05D006708 4.0e-29 132.5 95 65.3
Cre06.g272400 Chlamydomonas reinhardtii HOM05D005542 ORTHO05D006708 7.1e-18 95.1 206 33.0
Potri.007G021600 Populus trichocarpa HOM05D003144 ORTHO05D003539 5.1e-08 62.4 139 28.1
Lalb_Chr05g0212641 Lupinus albus HOM05D003144 ORTHO05D003539 8.6e-08 61.6 137 29.9
Cre06.g295250 Chlamydomonas reinhardtii HOM05D003144 ORTHO05D003539 1.9e-07 60.5 154 31.8
Atru.chr9.1343 Acer truncatum HOM05D007612 ORTHO05D009468 7.3e-07 58.5 124 33.9
Duzib205G1442 Durio zibethinus HOM05D007612 ORTHO05D009468 1.2e-06 57.8 124 33.1
Potri.005G120400 Populus trichocarpa HOM05D003144 ORTHO05D003539 1.2e-06 57.8 128 30.5
HanXRQChr14g0440521 Helianthus annuus HOM05D003144 ORTHO05D003539 1.6e-06 57.4 123 30.9
Lsat_1_v5_gn_3_75940 Lactuca sativa HOM05D003144 ORTHO05D003539 1.6e-06 57.4 132 31.1
PRCOL_00003536 Prasinoderma coloniale HOM05D003144 ORTHO05D003539 1.6e-06 57.4 161 29.2
Actinidia19199 Actinidia chinensis HOM05D003144 ORTHO05D003539 3.6e-06 56.2 128 27.3
Actinidia35629 Actinidia chinensis HOM05D003144 ORTHO05D003539 4.7e-06 55.8 135 27.4


User provided reference genes

Program Settings