Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy4G03153 Aquilegia oxysepala HOM05D004534 ORTHO05D005413 9.8e-250 866.3 428 100.0
Nn2g10612 Nelumbo nucifera HOM05D004534 ORTHO05D005413 2.7e-143 512.7 391 67.3
Cfa001577 Carpinus fangiana HOM05D004534 ORTHO05D005413 2.3e-142 509.6 391 66.2
GSVIVG01016358001 Vitis vinifera HOM05D004534 ORTHO05D005413 3.0e-142 509.2 361 70.1
GSVIVG01025090001 Vitis vinifera HOM05D004534 ORTHO05D005413 5.2e-142 508.4 355 69.9
Potri.010G216000 Populus trichocarpa HOM05D004534 ORTHO05D005413 2.0e-141 506.5 394 64.5
CAN.G394.3 Capsicum annuum HOM05D004534 ORTHO05D005413 2.6e-141 506.1 385 67.3
Potri.008G045700 Populus trichocarpa HOM05D004534 ORTHO05D005413 2.2e-140 503.1 394 64.2
Manes.11G138500 Manihot esculenta HOM05D004534 ORTHO05D005413 1.8e-139 500.0 393 65.1
Actinidia03016 Actinidia chinensis HOM05D004534 ORTHO05D005413 1.6e-138 496.9 392 65.8
Nitab4.5_0000270g0130 Nicotiana tabacum HOM05D004534 ORTHO05D005413 7.7e-138 494.6 385 66.2
PGSC0003DMG402006611 Solanum tuberosum HOM05D004534 ORTHO05D005413 1.3e-137 493.8 386 64.5
Solyc06g075540.3 Solanum lycopersicum HOM05D004534 ORTHO05D005413 2.3e-137 493.0 386 64.2
Nitab4.5_0004774g0020 Nicotiana tabacum HOM05D004534 ORTHO05D005413 3.8e-137 492.3 377 66.8
Atru.chr3.3749 Acer truncatum HOM05D004534 ORTHO05D005413 5.0e-137 491.9 392 64.8
Prupe.2G220600 Prunus persica HOM05D004534 ORTHO05D005413 5.0e-137 491.9 405 62.0
Haze_16951 Corylus avellana HOM05D004534 ORTHO05D005413 8.6e-137 491.1 405 62.0
Cpa.g.sc139.34 Carica papaya HOM05D004534 ORTHO05D005413 1.1e-136 490.7 364 65.7
Thecc.10G065400 Theobroma cacao HOM05D004534 ORTHO05D005413 1.1e-136 490.7 359 66.3
Ciclev10030338m.g Citrus clementina HOM05D004534 ORTHO05D005413 1.5e-136 490.3 384 65.6
Lsat_1_v5_gn_8_20980 Lactuca sativa HOM05D004534 ORTHO05D005413 2.5e-136 489.6 391 63.7
Ciclev10031838m.g Citrus clementina HOM05D004534 ORTHO05D005413 9.5e-136 487.6 364 66.5
ECA233G2770 Erigeron canadensis HOM05D004534 ORTHO05D000452 1.6e-135 486.9 357 67.8
QL01p035546 Quercus lobata HOM05D004534 ORTHO05D005413 1.6e-135 486.9 392 65.8
CSS0028612 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 2.1e-135 486.5 417 61.2
CiPaw.01G277800 Carya illinoinensis HOM05D004534 ORTHO05D005413 2.1e-135 486.5 391 64.5
COL.COLO4_23775 Corchorus olitorius HOM05D004534 ORTHO05D005413 2.1e-135 486.5 352 66.5
Peaxi162Scf00072g00025 Petunia axillaris HOM05D004534 ORTHO05D005413 2.8e-135 486.1 346 69.4
Cfa011397 Carpinus fangiana HOM05D004534 ORTHO05D005413 3.6e-135 485.7 345 69.0
Gorai.009G315700 Gossypium raimondii HOM05D004534 ORTHO05D005413 6.1e-135 485.0 372 62.6
PSO384G4947 Papaver somniferum HOM05D004534 ORTHO05D005413 8.0e-135 484.6 386 64.0
CSS0009646 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 1.0e-134 484.2 358 69.0
Thhalv10002577m.g Eutrema salsugineum HOM05D004534 ORTHO05D005413 1.4e-134 483.8 362 65.5
MD11G1120100 Malus domestica HOM05D004534 ORTHO05D005413 1.4e-134 483.8 386 63.5
RcHm_v2.0_Chr1g0364391 Rosa chinensis HOM05D004534 ORTHO05D005413 1.4e-134 483.8 391 62.9
Rhsim01G0222900 Rhododendron simsii HOM05D004534 ORTHO05D005413 1.8e-134 483.4 382 63.9
RcHm_v2.0_Chr5g0061761 Rosa chinensis HOM05D004534 ORTHO05D005413 1.8e-134 483.4 352 66.2
TWI31G1398 Tripterygium wilfordii HOM05D004534 ORTHO05D005413 3.0e-134 482.6 370 65.9
Dinv32819 Davidia involucrata HOM05D004534 ORTHO05D005413 4.0e-134 482.3 362 67.4
Gohir.D05G298500 Gossypium hirsutum HOM05D004534 ORTHO05D005413 4.0e-134 482.3 372 62.4
CANSAT54G1456 Cannabis sativa HOM05D004534 ORTHO05D005413 5.2e-134 481.9 349 67.3
THA.LOC104814850 Tarenaya hassleriana HOM05D004534 ORTHO05D005413 1.2e-133 480.7 381 62.5
PGR044G2491 Punica granatum HOM05D004534 ORTHO05D005413 1.5e-133 480.3 389 62.2
CARHR149920 Cardamine hirsuta HOM05D004534 ORTHO05D005413 3.4e-133 479.2 375 64.0
HanXRQChr08g0219701 Helianthus annuus HOM05D004534 ORTHO05D005413 3.4e-133 479.2 387 64.3
Hma1.2p1_2042F.1_g312230 Hydrangea macrophylla HOM05D004534 ORTHO05D005413 3.4e-133 479.2 356 69.7
ATR0582G124 Amborella trichopoda HOM05D004534 ORTHO05D005413 4.4e-133 478.8 356 67.1
arahy.Tifrunner.gnm1.ann1.NM19P7 Arachis hypogaea HOM05D004534 ORTHO05D005413 1.3e-132 477.2 340 66.8
AL5G24380 Arabidopsis lyrata HOM05D004534 ORTHO05D005413 1.7e-132 476.9 385 62.3
PSO339G4951 Papaver somniferum HOM05D004534 ORTHO05D005413 3.7e-132 475.7 386 63.5
Sp5g15770 Schrenkiella parvula HOM05D004534 ORTHO05D005413 4.9e-132 475.3 376 63.8
Lalb_Chr24g0394391 Lupinus albus HOM05D004534 ORTHO05D005413 6.3e-132 474.9 358 65.6
arahy.Tifrunner.gnm1.ann1.AW7LWX Arachis hypogaea HOM05D004534 ORTHO05D005413 1.4e-131 473.8 340 66.8
Migut.D02166 Erythranthe guttata HOM05D004534 ORTHO05D005413 1.4e-131 473.8 381 63.5
FAN11G3381 Fragaria x ananassa HOM05D004534 ORTHO05D005413 2.4e-131 473.0 354 64.4
Aa31LG4G14970 Aethionema arabicum HOM05D004534 ORTHO05D005413 3.1e-131 472.6 373 63.3
Dinv31374 Davidia involucrata HOM05D004534 ORTHO05D005413 3.1e-131 472.6 344 67.2
AT3G45740 Arabidopsis thaliana HOM05D004534 ORTHO05D005413 5.4e-131 471.9 356 64.9
FvH4_3g34110 Fragaria vesca HOM05D004534 ORTHO05D005413 5.4e-131 471.9 354 64.4
FAN06G4936 Fragaria x ananassa HOM05D004534 ORTHO05D005413 7.0e-131 471.5 386 61.1
TWI38G2053 Tripterygium wilfordii HOM05D004534 ORTHO05D005413 7.0e-131 471.5 346 66.8
Lj3g0025326 Lotus japonicus HOM05D004534 ORTHO05D005413 9.2e-131 471.1 355 65.4
Migut.F02016 Erythranthe guttata HOM05D004534 ORTHO05D005413 1.6e-130 470.3 346 64.7
MSTRG.18620 Avicennia marina HOM05D004534 ORTHO05D005413 2.0e-130 469.9 359 64.6
BolC3t19273H Brassica oleracea HOM05D004534 ORTHO05D005413 2.0e-130 469.9 377 63.1
Gohir.A08G000096 Gossypium hirsutum HOM05D004534 ORTHO05D005413 2.0e-130 469.9 350 66.0
BcaC01g01956 Brassica carinata HOM05D004534 ORTHO05D005413 4.5e-130 468.8 377 63.1
C03p70180 Brassica napus HOM05D004534 ORTHO05D005413 4.5e-130 468.8 377 63.1
A06p21280 Brassica napus HOM05D004534 ORTHO05D005413 5.9e-130 468.4 386 61.7
BraA06t25216Z Brassica rapa HOM05D004534 ORTHO05D005413 5.9e-130 468.4 377 62.9
Thecc.09G335300 Theobroma cacao HOM05D004534 ORTHO05D005413 1.0e-129 467.6 350 66.9
Atru.chr12.616 Acer truncatum HOM05D004534 ORTHO05D005413 2.3e-129 466.5 394 61.4
Glyma.13G330000 Glycine max HOM05D004534 ORTHO05D005413 2.3e-129 466.5 345 65.2
DCAR_018857 Daucus carota HOM05D004534 ORTHO05D005413 3.9e-129 465.7 390 60.8
Gohir.D08G009000 Gossypium hirsutum HOM05D004534 ORTHO05D005413 8.6e-129 464.5 350 65.1
PGR102G1844 Punica granatum HOM05D004534 ORTHO05D005413 1.9e-128 463.4 340 64.7
Psat5g281360 Pisum sativum HOM05D004534 ORTHO05D005413 2.5e-128 463.0 351 64.4
Phvul.L001232 Phaseolus vulgaris HOM05D004534 ORTHO05D005413 7.3e-128 461.5 352 64.2
Sed0013966 Sechium edule HOM05D004534 ORTHO05D005413 7.3e-128 461.5 381 61.9
TPR.G11635 Trifolium pratense HOM05D004534 ORTHO05D005413 7.3e-128 461.5 367 63.2
Cc01_g11880 Coffea canephora HOM05D004534 ORTHO05D005413 1.2e-127 460.7 386 61.7
MELO3C026849.2 Cucumis melo HOM05D004534 ORTHO05D005413 6.1e-127 458.4 366 63.9
Medtr2g095830 Medicago truncatula HOM05D004534 ORTHO05D005413 8.9e-126 454.5 361 61.5
CsaV3_5G026040 Cucumis sativus L. HOM05D004534 ORTHO05D005413 1.2e-125 454.1 349 64.8
CsaV3_1G012750 Cucumis sativus L. HOM05D004534 ORTHO05D005413 2.0e-125 453.4 347 64.6
FAN21G3213 Fragaria x ananassa HOM05D004534 ORTHO05D005413 3.4e-125 452.6 365 61.1
unitig_37.g12680 Utricularia gibba HOM05D004534 ORTHO05D005413 1.7e-124 450.3 345 64.1
HPP92_003600 Vanilla planifolia HOM05D004534 ORTHO05D005413 2.2e-124 449.9 373 61.7
vmacro14490 Vaccinium macrocarpon HOM05D004534 ORTHO05D005413 2.9e-124 449.5 431 56.8
EL10Ac2g03539 Beta vulgaris HOM05D004534 ORTHO05D005413 6.4e-124 448.4 358 62.6
MD07G1181700 Malus domestica HOM05D004534 ORTHO05D005413 1.4e-123 447.2 381 59.6
Peaxi162Scf01024g00128 Petunia axillaris HOM05D004534 ORTHO05D005413 2.4e-123 446.4 395 59.7
Ca_01369_v3 Cicer arietinum L. HOM05D004534 ORTHO05D005413 7.0e-123 444.9 349 63.3
Zm00001eb397220 Zea mays HOM05D004534 ORTHO05D005413 3.9e-121 439.1 361 60.4
CDE04G1344 Ceratophyllum demersum HOM05D004534 ORTHO05D005413 5.6e-120 435.3 408 57.8
Os03g0284500 Oryza sativa ssp. japonica HOM05D004534 ORTHO05D005413 9.5e-120 434.5 363 59.5
VMungo1080G0465 Vigna mungo HOM05D004534 ORTHO05D005413 6.2e-119 431.8 345 62.0
FAN01G1783 Fragaria x ananassa HOM05D004534 ORTHO05D005413 3.1e-118 429.5 384 58.1
FAN03G3228 Fragaria x ananassa HOM05D004534 ORTHO05D005413 6.8e-118 428.3 386 57.0
Sabra08G0032000 Salix brachista HOM05D004534 ORTHO05D005413 2.0e-117 426.8 364 60.2
Manes.10G040600 Manihot esculenta HOM05D004534 ORTHO05D005413 7.5e-117 424.9 371 59.0
BcaB01g01071 Brassica carinata HOM05D004534 ORTHO05D005413 9.8e-117 424.5 307 67.1
Sabra10G0167000 Salix brachista HOM05D004534 ORTHO05D005413 1.4e-115 420.6 371 58.8
CSS0050279 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 1.9e-115 420.2 351 64.7
MELO3C025495.2 Cucumis melo HOM05D004534 ORTHO05D005413 6.0e-114 415.2 364 59.3
Oeu055059.2 Olea europaea HOM05D004534 ORTHO05D005413 6.0e-114 415.2 308 64.9
EL10Ac7g15886 Beta vulgaris HOM05D004534 ORTHO05D005413 2.3e-113 413.3 413 53.8
Ah.10g033090 Amaranthus hybridus HOM05D004534 ORTHO05D005413 3.0e-113 412.9 341 61.6
Duzib106G1068 Durio zibethinus HOM05D004534 ORTHO05D005413 3.9e-113 412.5 391 56.0
QL08p057247 Quercus lobata HOM05D004534 ORTHO05D005413 5.1e-113 412.1 543 43.8
Hund18962 Selenicereus undatus HOM05D004534 ORTHO05D005413 5.1e-113 412.1 373 57.6
Gorai.004G002200 Gossypium raimondii HOM05D004534 ORTHO05D005413 7.3e-112 408.3 304 65.8
Nitab4.5_0000561g0030 Nicotiana tabacum HOM05D004534 ORTHO05D005413 1.6e-111 407.1 357 59.4
AUR62009701 Chenopodium quinoa HOM05D004534 ORTHO05D005413 4.7e-111 405.6 342 60.5
FAN25G2491 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.1e-110 404.4 386 54.7
Oeu051854.2 Olea europaea HOM05D004534 ORTHO05D005413 9.9e-109 397.9 418 52.9
FAN06G3998 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.3e-108 397.5 495 46.9
AUR62036245 Chenopodium quinoa HOM05D004534 ORTHO05D005413 4.1e-107 392.5 376 54.5
Sc06g0008140 Simmondsia chinensis HOM05D004534 ORTHO05D005413 2.3e-105 386.7 381 54.3
Lj1A180G32 Lonicera japonica HOM05D004534 ORTHO05D005413 1.5e-104 384.0 305 62.0
Lj1A926G31 Lonicera japonica HOM05D004534 ORTHO05D005413 4.4e-101 372.5 330 59.7
Gohir.A05G298800 Gossypium hirsutum HOM05D004534 ORTHO05D005413 7.6e-101 371.7 272 64.7
Nitab4.5_0000830g0040 Nicotiana tabacum HOM05D004534 ORTHO05D005413 1.7e-100 370.5 346 56.6
FAN16G0790 Fragaria x ananassa HOM05D004534 ORTHO05D005413 5.4e-99 365.5 372 52.7
TAR633G1279 Trochodendron aralioides HOM05D004534 ORTHO05D005413 1.1e-96 357.8 277 66.4
Mapoly0029s0123 Marchantia polymorpha HOM05D004534 ORTHO05D005413 1.2e-93 347.8 348 51.4
AUR62036013 Chenopodium quinoa HOM05D004534 ORTHO05D005413 2.2e-92 343.6 390 51.0
CiPaw.13G104100 Carya illinoinensis HOM05D004534 ORTHO05D005413 7.8e-90 335.1 276 64.1
Sed0004393 Sechium edule HOM05D004534 ORTHO05D005413 1.1e-88 331.3 341 53.7
Prupe.6G090300 Prunus persica HOM05D004534 ORTHO05D005413 2.5e-88 330.1 249 67.1
FvH4_7g20500 Fragaria vesca HOM05D004534 ORTHO05D005413 5.6e-88 328.9 243 65.4
Pp3c16_8740 Physcomitrium patens HOM05D004534 ORTHO05D005413 7.3e-88 328.6 406 45.1
COL.COLO4_18394 Corchorus olitorius HOM05D004534 ORTHO05D005413 1.1e-86 324.7 302 56.3
SMO118G0317 Selaginella moellendorffii HOM05D004534 ORTHO05D005413 1.9e-83 313.9 346 47.1
Carub.0005s1159 Capsella rubella HOM05D004534 ORTHO05D005413 6.0e-82 308.9 236 63.6
SGA_v2.0_scaffold61G21215 Striga asiatica HOM05D004534 ORTHO05D005413 5.8e-77 292.4 244 60.7
Ciclev10032311m.g Citrus clementina HOM05D004534 ORTHO05D005413 1.3e-71 274.6 284 53.5
ClCG09G020370 Citrullus lanatus HOM05D004534 ORTHO05D005413 1.1e-70 271.6 345 44.6
Sopen06g031920 Solanum pennellii HOM05D004534 ORTHO05D005413 9.0e-70 268.5 207 64.7
Cc09_g02390 Coffea canephora HOM05D004534 ORTHO05D005413 3.0e-65 253.4 190 64.2
MBI18_g24932_MAGBIO Magnolia biondii HOM05D004534 ORTHO05D005413 1.5e-64 251.1 525 33.1
FAN10G0821 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.0e-60 238.4 354 42.1
AagrBONN_evm.TU.Sc2ySwM_228.5090 Anthoceros agrestis HOM05D004534 ORTHO05D005413 3.7e-55 219.9 190 54.7
CBR_g24062 Chara braunii HOM05D004534 ORTHO05D005413 1.2e-53 214.9 290 42.1
Cpa.g.sc1.278 Carica papaya HOM05D004534 ORTHO05D005413 1.7e-52 211.1 256 46.9
Cc09_g02400 Coffea canephora HOM05D004534 ORTHO05D005413 1.1e-40 171.8 130 65.4
Cfa024137 Carpinus fangiana HOM05D004534 ORTHO05D005413 8.2e-39 165.6 399 32.6
Cre01.g013250 Chlamydomonas reinhardtii HOM05D004534 ORTHO05D005413 4.1e-38 163.3 330 31.5
PRCOL_00005152 Prasinoderma coloniale HOM05D004534 ORTHO05D005413 1.6e-37 161.4 303 34.3
Nitab4.5_0000830g0060 Nicotiana tabacum HOM05D004534 ORTHO05D005413 1.0e-36 158.7 175 50.9
AUR62035991 Chenopodium quinoa HOM05D004534 ORTHO05D005413 3.0e-25 120.6 116 52.6
VMungo0464G2039 Vigna mungo HOM05D004534 ORTHO05D005413 1.1e-22 112.1 93 61.3
Glyma.15G044000 Glycine max HOM05D004534 ORTHO05D005413 2.3e-17 94.4 81 58.0
CAN.G829.5 Capsicum annuum HOM05D004534 ORTHO05D005706 2.6e-16 90.9 63 68.3
RcHm_v2.0_Chr1g0364361 Rosa chinensis HOM05D003391 ORTHO05D005413 2.6e-16 90.9 56 76.8
RcHm_v2.0_Chr5g0046071 Rosa chinensis HOM05D004534 ORTHO05D005413 5.4e-14 83.2 47 78.7
Nitab4.5_0000830g0070 Nicotiana tabacum HOM05D004534 ORTHO05D005413 3.1e-09 67.4 44 70.5
Actinidia38238 Actinidia chinensis HOM05D004534 ORTHO05D005413 4.0e-09 67.0 130 33.8
AagrBONN_evm.TU.Sc2ySwM_117.2640 Anthoceros agrestis HOM05D012537 ORTHO05D009535 4.9e-07 60.1 56 48.2


User provided reference genes

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