Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy4G03101 Aquilegia oxysepala HOM05D004061 ORTHO05D004693 4.1e-122 441.4 223 100.0
Ca_08806_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 3.3e-71 272.3 216 60.2
TAR633G1989 Trochodendron aralioides HOM05D004061 ORTHO05D004693 3.6e-70 268.9 220 57.7
Psat0s1952g0040 Pisum sativum HOM05D004061 ORTHO05D004693 4.7e-70 268.5 217 59.9
TPR.G21459 Trifolium pratense HOM05D004061 ORTHO05D004693 6.8e-69 264.6 221 58.8
Duzib128G0701 Durio zibethinus HOM05D004061 ORTHO05D004693 1.2e-68 263.8 214 60.3
Medtr7g100150 Medicago truncatula HOM05D004061 ORTHO05D004693 2.6e-68 262.7 220 57.7
arahy.Tifrunner.gnm1.ann1.9VFE0J Arachis hypogaea HOM05D004061 ORTHO05D004693 7.5e-68 261.2 220 56.4
Glyma.19G176300 Glycine max HOM05D004061 ORTHO05D004693 9.8e-68 260.8 212 60.4
Lalb_Chr25g0289361 Lupinus albus HOM05D004061 ORTHO05D004693 2.9e-67 259.2 222 55.0
arahy.Tifrunner.gnm1.ann1.6R95LH Arachis hypogaea HOM05D004061 ORTHO05D004693 4.9e-67 258.5 220 55.9
QL07p045968 Quercus lobata HOM05D004061 ORTHO05D004693 8.3e-67 257.7 219 56.6
Nn2g10562 Nelumbo nucifera HOM05D004061 ORTHO05D004693 1.4e-66 256.9 202 61.4
Lj1g0024664 Lotus japonicus HOM05D004061 ORTHO05D004693 2.4e-66 256.1 221 56.6
CiPaw.09G185500 Carya illinoinensis HOM05D004061 ORTHO05D004693 3.2e-66 255.8 209 59.3
CiPaw.10G139500 Carya illinoinensis HOM05D004061 ORTHO05D004693 9.2e-66 254.2 214 58.4
Haze_20694 Corylus avellana HOM05D004061 ORTHO05D004693 9.2e-66 254.2 243 52.7
Glyma.13G134900 Glycine max HOM05D004061 ORTHO05D004693 9.2e-66 254.2 209 56.0
Nn2g12823 Nelumbo nucifera HOM05D004061 ORTHO05D004693 9.2e-66 254.2 213 55.9
arahy.Tifrunner.gnm1.ann1.Y28VT2 Arachis hypogaea HOM05D004061 ORTHO05D004693 1.6e-65 253.4 219 54.8
ClCG04G008650 Citrullus lanatus HOM05D004061 ORTHO05D004693 1.6e-65 253.4 219 53.9
PSO699G0012 Papaver somniferum HOM05D004061 ORTHO05D004693 1.6e-65 253.4 227 57.7
Migut.L01642 Erythranthe guttata HOM05D004061 ORTHO05D004693 2.7e-65 252.7 208 58.7
Glyma.03G175700 Glycine max HOM05D004061 ORTHO05D004693 2.7e-65 252.7 218 55.0
Oeu035162.1 Olea europaea HOM05D004061 ORTHO05D004693 2.7e-65 252.7 200 60.0
VMungo1383G1764 Vigna mungo HOM05D004061 ORTHO05D004693 3.5e-65 252.3 212 59.0
Nitab4.5_0000643g0160 Nicotiana tabacum HOM05D004061 ORTHO05D004693 5.9e-65 251.5 211 57.3
Lj3A975G70 Lonicera japonica HOM05D004061 ORTHO05D004693 3.9e-64 248.8 214 56.1
Sed0004679 Sechium edule HOM05D004061 ORTHO05D004693 3.9e-64 248.8 209 58.4
Duzib093G0371 Durio zibethinus HOM05D004061 ORTHO05D004693 2.5e-63 246.1 224 54.9
Nitab4.5_0000202g0310 Nicotiana tabacum HOM05D004061 ORTHO05D004693 4.3e-63 245.4 212 55.2
Nitab4.5_0006252g0020 Nicotiana tabacum HOM05D004061 ORTHO05D004693 4.3e-63 245.4 211 56.9
PSO339G1720 Papaver somniferum HOM05D004061 ORTHO05D004693 4.3e-63 245.4 216 55.1
Gorai.001G248900 Gossypium raimondii HOM05D004061 ORTHO05D004693 5.6e-63 245.0 224 54.5
TWI74G1169 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 5.6e-63 245.0 201 62.7
HanXRQChr13g0392181 Helianthus annuus HOM05D004061 ORTHO05D004693 1.2e-62 243.8 220 57.7
Peaxi162Scf00604g00010 Petunia axillaris HOM05D004061 ORTHO05D004693 1.2e-62 243.8 206 55.8
Cfa017465 Carpinus fangiana HOM05D004061 ORTHO05D004693 1.6e-62 243.4 183 61.7
Gohir.A13G095435 Gossypium hirsutum HOM05D004061 ORTHO05D004693 1.6e-62 243.4 222 58.1
Cc06_g03260 Coffea canephora HOM05D004061 ORTHO05D004693 2.1e-62 243.0 209 57.4
Gohir.A01G218200 Gossypium hirsutum HOM05D004061 ORTHO05D004693 2.1e-62 243.0 216 59.3
Gohir.D13G097300 Gossypium hirsutum HOM05D004061 ORTHO05D004693 2.1e-62 243.0 224 58.0
MBI05_g22082_MAGBIO Magnolia biondii HOM05D004061 ORTHO05D004693 2.1e-62 243.0 206 56.3
MSTRG.19117 Avicennia marina HOM05D004061 ORTHO05D004693 2.8e-62 242.7 220 52.3
Manes.08G000500 Manihot esculenta HOM05D004061 ORTHO05D004693 2.8e-62 242.7 206 56.8
Phvul.007G161100 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 2.8e-62 242.7 209 53.1
Lj5g0017469 Lotus japonicus HOM05D004061 ORTHO05D004693 3.6e-62 242.3 209 53.1
Ciclev10012656m.g Citrus clementina HOM05D004061 ORTHO05D004693 4.7e-62 241.9 218 53.2
Lalb_Chr20g0113041 Lupinus albus HOM05D004061 ORTHO05D004693 4.7e-62 241.9 221 53.4
Potri.016G081900 Populus trichocarpa HOM05D004061 ORTHO05D004693 6.2e-62 241.5 217 53.9
Thecc.05G049300 Theobroma cacao HOM05D004061 ORTHO05D004693 8.0e-62 241.1 219 56.6
PSO384G5009 Papaver somniferum HOM05D004061 ORTHO05D004693 1.0e-61 240.7 206 56.3
GSVIVG01025578001 Vitis vinifera HOM05D004061 ORTHO05D004693 1.0e-61 240.7 214 54.7
CDE04G1398 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 1.4e-61 240.4 195 56.4
Glyma.10G046900 Glycine max HOM05D004061 ORTHO05D004693 1.8e-61 240.0 208 52.9
arahy.Tifrunner.gnm1.ann1.H9GTJP Arachis hypogaea HOM05D004061 ORTHO05D004693 3.1e-61 239.2 246 48.0
THA.LOC104806513 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 4.0e-61 238.8 221 56.1
TWI77G0888 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 6.8e-61 238.0 207 60.4
ECA248G1662 Erigeron canadensis HOM05D004061 ORTHO05D004693 8.9e-61 237.7 207 55.6
Actinidia05286 Actinidia chinensis HOM05D004061 ORTHO05D004693 2.6e-60 236.1 217 55.8
MD12G1131500 Malus domestica HOM05D004061 ORTHO05D004693 2.6e-60 236.1 205 56.6
Rhsim05G0184700 Rhododendron simsii HOM05D004061 ORTHO05D004693 2.6e-60 236.1 217 56.2
Solyc09g005960.4 Solanum lycopersicum HOM05D004061 ORTHO05D004693 2.6e-60 236.1 205 54.6
CDE07G0262 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 3.4e-60 235.7 199 54.8
FAN05G3362 Fragaria x ananassa HOM05D004061 ORTHO05D004693 4.4e-60 235.3 223 56.5
RcHm_v2.0_Chr3g0468021 Rosa chinensis HOM05D004061 ORTHO05D004693 7.5e-60 234.6 223 56.5
Sopen09g001820 Solanum pennellii HOM05D004061 ORTHO05D004693 7.5e-60 234.6 205 54.1
Lsat_1_v5_gn_1_54740 Lactuca sativa HOM05D004061 ORTHO05D004693 9.8e-60 234.2 220 55.5
FvH4_6g14800 Fragaria vesca HOM05D004061 ORTHO05D004693 1.3e-59 233.8 223 56.5
FAN14G1560 Fragaria x ananassa HOM05D004061 ORTHO05D004693 1.3e-59 233.8 223 56.5
vmacro20095 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 2.2e-59 233.0 195 59.0
ATR0594G174 Amborella trichopoda HOM05D004061 ORTHO05D004693 2.9e-59 232.6 212 54.7
Os03g0282800 Oryza sativa ssp. japonica HOM05D004061 ORTHO05D004693 2.9e-59 232.6 210 58.1
MD04G1110000 Malus domestica HOM05D004061 ORTHO05D004693 3.7e-59 232.3 221 55.7
CANSAT80G1299 Cannabis sativa HOM05D004061 ORTHO05D004693 4.9e-59 231.9 203 55.2
Sp5g08850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 6.4e-59 231.5 209 55.0
vmacro08681 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 1.1e-58 230.7 191 58.1
Cpa.g.sc114.23 Carica papaya HOM05D004061 ORTHO05D004693 1.4e-58 230.3 219 53.0
MELO3C003083.2 Cucumis melo HOM05D004061 ORTHO05D004693 1.4e-58 230.3 223 54.7
AT3G53490 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 1.9e-58 229.9 223 52.5
Sed0004085 Sechium edule HOM05D004061 ORTHO05D004693 2.4e-58 229.6 219 51.1
PGSC0003DMG400011053 Solanum tuberosum HOM05D004061 ORTHO05D004693 3.2e-58 229.2 213 51.6
CARHR163390 Cardamine hirsuta HOM05D004061 ORTHO05D004693 4.1e-58 228.8 222 52.7
CsaV3_4G024510 Cucumis sativus L. HOM05D004061 ORTHO05D004693 4.1e-58 228.8 223 54.3
unitig_8.g4322 Utricularia gibba HOM05D004061 ORTHO05D004693 4.1e-58 228.8 209 53.1
AL5G34410 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 5.4e-58 228.4 210 54.3
Medtr1g067320 Medicago truncatula HOM05D004061 ORTHO05D004693 5.4e-58 228.4 210 48.1
Sc20g0004290 Simmondsia chinensis HOM05D004061 ORTHO05D004693 7.0e-58 228.0 208 53.4
FAN02G3315 Fragaria x ananassa HOM05D004061 ORTHO05D004693 9.2e-58 227.6 223 56.5
Carub.0005s2006 Capsella rubella HOM05D004061 ORTHO05D004693 1.6e-57 226.9 210 54.3
Gorai.002G252200 Gossypium raimondii HOM05D004061 ORTHO05D004693 1.6e-57 226.9 244 51.6
Gohir.D01G207100 Gossypium hirsutum HOM05D004061 ORTHO05D004693 2.0e-57 226.5 244 50.0
Prupe.6G245800 Prunus persica HOM05D004061 ORTHO05D004693 2.0e-57 226.5 226 54.4
Lj2C103T21 Lonicera japonica HOM05D004061 ORTHO05D004693 2.7e-57 226.1 199 53.8
Sabra16G0089600 Salix brachista HOM05D004061 ORTHO05D004693 4.6e-57 225.3 261 46.0
Peaxi162Scf00597g00310 Petunia axillaris HOM05D004061 ORTHO05D004693 6.0e-57 224.9 234 49.6
Aa31LG10G9640 Aethionema arabicum HOM05D004061 ORTHO05D004693 1.3e-56 223.8 209 51.2
Sopen10g033930 Solanum pennellii HOM05D004061 ORTHO05D004693 1.7e-56 223.4 213 50.7
C06p21460 Brassica napus HOM05D004061 ORTHO05D004693 3.0e-56 222.6 210 52.9
Phvul.001G172800 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 3.9e-56 222.2 214 52.8
Solyc10g084500.1 Solanum lycopersicum HOM05D004061 ORTHO05D004693 3.9e-56 222.2 213 49.8
EL10Ac7g17278 Beta vulgaris HOM05D004061 ORTHO05D004693 8.6e-56 221.1 210 51.4
HPP92_006587 Vanilla planifolia HOM05D004061 ORTHO05D004693 8.6e-56 221.1 211 50.7
AUR62044395 Chenopodium quinoa HOM05D004061 ORTHO05D004693 1.1e-55 220.7 214 50.9
Dinv35675 Davidia involucrata HOM05D004061 ORTHO05D004693 2.5e-55 219.5 144 68.8
BcaC08g44627 Brassica carinata HOM05D004061 ORTHO05D004693 4.3e-55 218.8 210 52.4
BraA07t29848Z Brassica rapa HOM05D004061 ORTHO05D004693 4.3e-55 218.8 211 53.1
A07p21670 Brassica napus HOM05D004061 ORTHO05D004693 5.6e-55 218.4 211 51.7
BolC6t37328H Brassica oleracea HOM05D004061 ORTHO05D004693 9.5e-55 217.6 210 51.9
Dinv35674 Davidia involucrata HOM05D004061 ORTHO05D004693 9.5e-55 217.6 147 66.7
Thhalv10010698m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 2.1e-54 216.5 209 51.7
CAN.G435.5 Capsicum annuum HOM05D004061 ORTHO05D004693 2.8e-54 216.1 203 49.3
HanXRQChr11g0349611 Helianthus annuus HOM05D004061 ORTHO05D004693 4.7e-54 215.3 215 48.8
Psat6g069360 Pisum sativum HOM05D004061 ORTHO05D004693 4.7e-54 215.3 184 50.0
Hund12072 Selenicereus undatus HOM05D004061 ORTHO05D004693 8.1e-54 214.5 230 51.7
SalBow4G2839 Salvia bowleyana HOM05D004061 ORTHO05D004693 1.4e-53 213.8 223 54.3
PGR004G1528 Punica granatum HOM05D004061 ORTHO05D004693 2.3e-53 213.0 218 50.0
Lalb_Chr01g0019101 Lupinus albus HOM05D004061 ORTHO05D004693 6.8e-53 211.5 209 50.7
Atru.chr8.2505 Acer truncatum HOM05D004061 ORTHO05D004693 8.9e-53 211.1 222 50.9
Ca_11436_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 2.0e-52 209.9 203 45.8
HPP92_015408 Vanilla planifolia HOM05D004061 ORTHO05D004693 2.0e-52 209.9 203 53.2
Aqoxy4G03086 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 2.6e-52 209.5 209 52.2
TPR.G7552 Trifolium pratense HOM05D004061 ORTHO05D004693 1.3e-51 207.2 184 50.5
VMungo0720G0415 Vigna mungo HOM05D004061 ORTHO05D004693 3.7e-51 205.7 261 41.0
SHI12648 Sapria himalayana HOM05D004061 ORTHO05D004693 1.6e-49 200.3 200 50.0
SGA_v2.0_scaffold35G14186 Striga asiatica HOM05D004061 ORTHO05D004693 2.7e-49 199.5 190 49.5
Pp3c2_4500 Physcomitrium patens HOM05D004061 ORTHO05D004693 4.6e-49 198.7 218 48.2
unitig_578.g16044 Utricularia gibba HOM05D004061 ORTHO05D004693 1.9e-47 193.4 201 49.8
Oeu049603.1 Olea europaea HOM05D004061 ORTHO05D004693 3.3e-47 192.6 131 64.9
Sp6g39850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 4.7e-46 188.7 211 44.5
Carub.0006s0148 Capsella rubella HOM05D004061 ORTHO05D004693 6.2e-46 188.3 225 43.6
Aa31LG10G9670 Aethionema arabicum HOM05D004061 ORTHO05D004693 3.1e-45 186.0 186 48.9
THA.LOC104816298 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 4.0e-45 185.7 195 52.3
BcaC02g09159 Brassica carinata HOM05D004061 ORTHO05D004693 5.2e-45 185.3 210 49.0
AT5G02720 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 2.0e-44 183.3 225 42.2
BolC4t25479H Brassica oleracea HOM05D004061 ORTHO05D004693 5.8e-44 181.8 224 46.4
AagrBONN_evm.TU.Sc2ySwM_117.2779 Anthoceros agrestis HOM05D004061 ORTHO05D004693 1.3e-43 180.6 215 44.7
A10p32990 Brassica napus HOM05D004061 ORTHO05D004693 1.7e-43 180.3 216 40.7
C04p39050 Brassica napus HOM05D004061 ORTHO05D004693 1.7e-43 180.3 224 46.4
Pp3c17_20730 Physcomitrium patens HOM05D004061 ORTHO05D004693 6.4e-43 178.3 219 44.7
Pp3c17_20731 Physcomitrium patens HOM05D004061 ORTHO05D004693 6.4e-43 178.3 219 44.7
BraA10t45336Z Brassica rapa HOM05D004061 ORTHO05D004693 1.1e-42 177.6 208 41.8
SMO164G0167 Selaginella moellendorffii HOM05D004061 ORTHO05D004693 1.1e-42 177.6 214 42.5
PSO675G5312 Papaver somniferum HOM05D004061 ORTHO05D004693 1.4e-42 177.2 203 49.8
A04p06100 Brassica napus HOM05D004061 ORTHO05D004693 2.4e-42 176.4 209 48.8
BolC9t60131H Brassica oleracea HOM05D004061 ORTHO05D004693 3.2e-42 176.0 207 43.0
Ah.08g212360 Amaranthus hybridus HOM05D004061 ORTHO05D004693 9.2e-42 174.5 193 51.8
BcaNung03280 Brassica carinata HOM05D004061 ORTHO05D004693 9.2e-42 174.5 207 42.5
BraA04t16312Z Brassica rapa HOM05D004061 ORTHO05D004693 9.2e-42 174.5 209 48.3
Dinv37231 Davidia involucrata HOM05D004061 ORTHO05D004693 1.2e-41 174.1 138 60.9
HPP92_026988 Vanilla planifolia HOM05D004061 ORTHO05D004693 1.0e-40 171.0 181 50.8
Mapoly0179s0007 Marchantia polymorpha HOM05D004061 ORTHO05D004693 4.3e-39 165.6 258 38.4
COL.COLO4_10313 Corchorus olitorius HOM05D004061 ORTHO05D004693 5.1e-32 142.1 136 52.2
CBR_g49836 Chara braunii HOM05D006172 ORTHO05D004693 2.1e-30 136.7 139 49.6
AUR62042140 Chenopodium quinoa HOM05D004061 ORTHO05D004693 1.8e-29 133.7 134 47.0
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 1.5e-28 130.6 155 44.5
ATR0594G139 Amborella trichopoda HOM05D004061 ORTHO05D004693 9.9e-28 127.9 172 41.9
BcaB02g08525 Brassica carinata HOM05D004061 ORTHO05D004693 3.8e-27 125.9 163 43.6
C09p73960 Brassica napus HOM05D004061 ORTHO05D004693 1.0e-24 117.9 204 32.8
BcaC06g32007 Brassica carinata HOM05D004061 ORTHO05D004693 5.1e-24 115.5 208 32.7
Thhalv10016063m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 1.3e-19 100.9 140 37.1
AL6G11960 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 1.1e-18 97.8 141 35.5
Zm00001eb397300 Zea mays HOM05D004061 ORTHO05D004693 7.1e-18 95.1 106 44.3
Zm00001eb012900 Zea mays HOM05D004061 ORTHO05D004693 1.0e-16 91.3 90 53.3
ATR0594G136 Amborella trichopoda HOM05D004061 ORTHO05D004693 3.0e-16 89.7 150 36.0
CARHR210670 Cardamine hirsuta HOM05D004061 ORTHO05D004693 3.0e-16 89.7 65 58.5
BcaB02g07781 Brassica carinata HOM05D004061 ORTHO05D004693 8.7e-16 88.2 83 53.0
vmacro08682 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 3.1e-13 79.7 66 57.6
Zm00001eb131400 Zea mays HOM05D004061 ORTHO05D001113 2.7e-09 66.6 47 57.4
Zm00001eb346430 Zea mays HOM05D004061 ORTHO05D004693 2.7e-09 66.6 71 43.7
AUR62041005 Chenopodium quinoa HOM05D004061 ORTHO05D004693 1.3e-08 64.3 48 62.5
Zm00001eb341480 Zea mays HOM05D014943 ORTHO05D019389 1.5e-07 60.8 71 40.8
BolC3t12673H Brassica oleracea HOM05D004061 ORTHO05D004693 4.3e-07 59.3 102 33.3
HPP92_026989 Vanilla planifolia HOM05D004061 ORTHO05D004693 5.7e-07 58.9 34 76.5


User provided reference genes

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