Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy4G03025 Aquilegia oxysepala HOM05D003665 ORTHO05D004387 0.0e+00 1365.5 699 100.0
TAR623G1097 Trochodendron aralioides HOM05D003665 ORTHO05D004387 7.7e-236 820.8 626 70.4
CSS0007464 Camellia sinensis var. sinensis HOM05D003665 ORTHO05D004387 6.5e-235 817.8 513 80.7
GSVIVG01025191001 Vitis vinifera HOM05D003665 ORTHO05D004387 1.4e-232 810.1 529 77.9
CSS0036787 Camellia sinensis var. sinensis HOM05D003665 ORTHO05D004387 2.0e-231 806.2 586 72.0
Nn2g12882 Nelumbo nucifera HOM05D003665 ORTHO05D004387 4.4e-231 805.1 543 76.8
MBI05_g08786_MAGBIO Magnolia biondii HOM05D003665 ORTHO05D004387 8.2e-230 800.8 539 77.7
Cfa011312 Carpinus fangiana HOM05D003665 ORTHO05D004387 3.1e-229 798.9 530 77.4
vmacro03198 Vaccinium macrocarpon HOM05D003665 ORTHO05D004387 7.0e-229 797.7 506 78.7
CiPaw.13G113600 Carya illinoinensis HOM05D003665 ORTHO05D004387 2.9e-227 792.3 523 77.4
MD11G1136600 Malus domestica HOM05D003665 ORTHO05D004387 7.2e-226 787.7 547 73.5
TWI31G1339 Tripterygium wilfordii HOM05D003665 ORTHO05D004387 3.6e-225 785.4 549 73.6
CiPaw.14G080900 Carya illinoinensis HOM05D003665 ORTHO05D004387 2.6e-223 779.2 535 75.3
FvH4_3g32210 Fragaria vesca HOM05D003665 ORTHO05D004387 3.4e-223 778.9 501 77.6
FAN25G3303 Fragaria x ananassa HOM05D003665 ORTHO05D004387 3.4e-223 778.9 499 77.4
RcHm_v2.0_Chr5g0058821 Rosa chinensis HOM05D003665 ORTHO05D004387 5.7e-223 778.1 499 77.6
Duzib170G0108 Durio zibethinus HOM05D003665 ORTHO05D004387 9.8e-223 777.3 535 74.6
CANSAT54G1114 Cannabis sativa HOM05D003665 ORTHO05D004387 1.7e-222 776.5 499 77.6
MELO3C004874.2 Cucumis melo HOM05D003665 ORTHO05D004387 3.7e-222 775.4 529 74.1
Eucgr.B02502 Eucalyptus grandis HOM05D003665 ORTHO05D004387 3.7e-222 775.4 510 76.7
Dinv09884 Davidia involucrata HOM05D003665 ORTHO05D004387 4.8e-222 775.0 533 76.4
ClCG01G013730 Citrullus lanatus HOM05D003665 ORTHO05D004387 8.3e-222 774.2 527 74.2
TAR369G0153 Trochodendron aralioides HOM05D003665 ORTHO05D004387 8.3e-222 774.2 553 73.8
Atru.chr3.3622 Acer truncatum HOM05D003665 ORTHO05D004387 2.4e-221 772.7 502 77.5
FAN11G0686 Fragaria x ananassa HOM05D003665 ORTHO05D004387 1.2e-220 770.4 511 75.5
Gorai.003G141900 Gossypium raimondii HOM05D003665 ORTHO05D004387 2.7e-220 769.2 508 76.8
Potri.004G211200 Populus trichocarpa HOM05D003665 ORTHO05D004387 2.7e-220 769.2 555 72.1
FAN21G1776 Fragaria x ananassa HOM05D003665 ORTHO05D004387 3.5e-220 768.8 499 76.8
Thecc.09G341400 Theobroma cacao HOM05D003665 ORTHO05D004387 3.5e-220 768.8 456 82.2
Gohir.D03G134800 Gossypium hirsutum HOM05D003665 ORTHO05D004387 4.5e-220 768.5 508 77.0
Sed0022671 Sechium edule HOM05D003665 ORTHO05D004387 4.5e-220 768.5 525 74.1
Duzib168G1080 Durio zibethinus HOM05D003665 ORTHO05D004387 5.9e-220 768.1 464 81.0
Potri.009G014400 Populus trichocarpa HOM05D003665 ORTHO05D004387 7.7e-220 767.7 545 72.8
CsaV3_1G014040 Cucumis sativus L. HOM05D003665 ORTHO05D004387 1.3e-219 766.9 555 71.5
Gohir.A03G033500 Gossypium hirsutum HOM05D003665 ORTHO05D004387 2.3e-219 766.1 508 77.0
Hma1.2p1_0058F.1_g032480 Hydrangea macrophylla HOM05D003665 ORTHO05D004387 2.3e-219 766.1 584 69.5
Gorai.009G107400 Gossypium raimondii HOM05D003665 ORTHO05D004387 8.6e-219 764.2 535 73.3
Gohir.D05G103100 Gossypium hirsutum HOM05D003665 ORTHO05D004387 1.1e-218 763.8 535 73.3
Sopen03g034790 Solanum pennellii HOM05D003665 ORTHO05D004387 1.5e-218 763.5 534 73.2
Ciclev10028088m.g Citrus clementina HOM05D003665 ORTHO05D004387 3.3e-218 762.3 504 76.2
Cc00_g12880 Coffea canephora HOM05D003665 ORTHO05D004387 3.3e-218 762.3 547 71.7
PGR119G2069 Punica granatum HOM05D003665 ORTHO05D004387 3.3e-218 762.3 498 76.7
FAN16G1206 Fragaria x ananassa HOM05D003665 ORTHO05D004387 5.5e-218 761.5 499 77.0
Solyc03g115810.3 Solanum lycopersicum HOM05D003665 ORTHO05D004387 1.6e-217 760.0 534 73.0
Prupe.6G102100 Prunus persica HOM05D003665 ORTHO05D004387 2.8e-217 759.2 448 81.9
MSTRG.18661 Avicennia marina HOM05D003665 ORTHO05D004387 3.6e-217 758.8 571 68.7
QL01p022122 Quercus lobata HOM05D003665 ORTHO05D004387 6.1e-217 758.1 601 67.6
Actinidia24103 Actinidia chinensis HOM05D003665 ORTHO05D004387 1.0e-216 757.3 582 69.2
VMungo1127G1530 Vigna mungo HOM05D003665 ORTHO05D004387 2.3e-216 756.1 510 74.5
EL10Ac2g02422 Beta vulgaris HOM05D003665 ORTHO05D004387 4.0e-216 755.4 553 70.5
SalBow3G4611 Salvia bowleyana HOM05D003665 ORTHO05D004387 8.9e-216 754.2 549 70.1
Lj3g0004290 Lotus japonicus HOM05D003665 ORTHO05D004387 1.5e-215 753.4 510 75.7
Haze_23819 Corylus avellana HOM05D003665 ORTHO05D004387 3.4e-215 752.3 586 69.5
PSO384G0045 Papaver somniferum HOM05D003665 ORTHO05D004387 4.4e-215 751.9 496 78.6
Gohir.A05G103400 Gossypium hirsutum HOM05D003665 ORTHO05D004387 5.7e-215 751.5 535 72.9
ATR0033G036 Amborella trichopoda HOM05D003665 ORTHO05D004387 7.5e-215 751.1 531 73.1
PSO339G3164 Papaver somniferum HOM05D003665 ORTHO05D004387 1.3e-214 750.4 494 77.7
Cpa.g.sc216.2 Carica papaya HOM05D003665 ORTHO05D004387 2.2e-214 749.6 523 73.6
Manes.11G145800 Manihot esculenta HOM05D003665 ORTHO05D004387 2.8e-214 749.2 590 67.6
Phvul.005G134800 Phaseolus vulgaris HOM05D003665 ORTHO05D004387 6.3e-214 748.0 519 72.8
Phvul.011G079600 Phaseolus vulgaris HOM05D003665 ORTHO05D004387 8.3e-214 747.7 510 74.5
Glyma.13G325700 Glycine max HOM05D003665 ORTHO05D004387 1.4e-213 746.9 487 76.8
MD03G1118200 Malus domestica HOM05D003665 ORTHO05D004387 2.4e-213 746.1 554 70.6
Sabra09G0007600 Salix brachista HOM05D003665 ORTHO05D004387 7.0e-213 744.6 587 68.1
SGA_v2.0_scaffold97G29239 Striga asiatica HOM05D003665 ORTHO05D004387 1.2e-212 743.8 531 70.4
Glyma.12G172200 Glycine max HOM05D003665 ORTHO05D004387 2.0e-212 743.0 487 76.4
Ca_19262_v3 Cicer arietinum L. HOM05D003665 ORTHO05D004387 9.5e-210 734.2 436 80.7
Medtr2g094470 Medicago truncatula HOM05D003665 ORTHO05D004387 9.5e-210 734.2 490 74.9
TPR.G11547 Trifolium pratense HOM05D003665 ORTHO05D004387 2.8e-209 732.6 488 75.8
Medtr4g059000 Medicago truncatula HOM05D003665 ORTHO05D004387 6.1e-209 731.5 509 72.1
Gohir.A08G198200 Gossypium hirsutum HOM05D003665 ORTHO05D004387 1.0e-208 730.7 502 74.3
Migut.D02227 Erythranthe guttata HOM05D003665 ORTHO05D004387 1.4e-208 730.3 530 69.8
Psat5g278960 Pisum sativum HOM05D003665 ORTHO05D004387 1.4e-208 730.3 492 74.6
HanXRQChr01g0019371 Helianthus annuus HOM05D003665 ORTHO05D004387 3.0e-208 729.2 565 69.4
THA.LOC104826364 Tarenaya hassleriana HOM05D003665 ORTHO05D004387 5.2e-208 728.4 503 72.6
VMungo1080G0406 Vigna mungo HOM05D003665 ORTHO05D004387 8.9e-208 727.6 487 74.7
Peaxi162Scf00274g00347 Petunia axillaris HOM05D003665 ORTHO05D004387 2.6e-207 726.1 506 73.3
ECA248G0778 Erigeron canadensis HOM05D003665 ORTHO05D004387 9.8e-207 724.2 492 74.4
Lalb_Chr22g0350251 Lupinus albus HOM05D003665 ORTHO05D004387 9.8e-207 724.2 537 70.2
Lj3g0015527 Lotus japonicus HOM05D003665 ORTHO05D004387 1.7e-206 723.4 420 83.6
SGA_v2.0_scaffold61G21127 Striga asiatica HOM05D003665 ORTHO05D004387 1.7e-206 723.4 650 60.9
Gorai.004G229200 Gossypium raimondii HOM05D003665 ORTHO05D004387 2.9e-206 722.6 506 73.3
Dinv32740 Davidia involucrata HOM05D003665 ORTHO05D004387 1.8e-205 719.9 573 67.2
Lalb_Chr19g0137231 Lupinus albus HOM05D003665 ORTHO05D004387 1.8e-205 719.9 436 79.4
Lalb_Chr24g0394651 Lupinus albus HOM05D003665 ORTHO05D004387 2.3e-203 713.0 527 70.4
Psat0s134g0040 Pisum sativum HOM05D003665 ORTHO05D004387 5.0e-203 711.8 470 75.3
Oeu030188.3 Olea europaea HOM05D003665 ORTHO05D004387 1.1e-202 710.7 617 62.9
THA.LOC104815747 Tarenaya hassleriana HOM05D003665 ORTHO05D004387 1.5e-202 710.3 489 72.4
ECA238G1380 Erigeron canadensis HOM05D003665 ORTHO05D004387 4.3e-202 708.8 546 67.6
TWI79G0002 Tripterygium wilfordii HOM05D003665 ORTHO05D004387 4.3e-202 708.8 410 82.7
Thhalv10016386m.g Eutrema salsugineum HOM05D003665 ORTHO05D004387 2.8e-201 706.1 528 67.4
arahy.Tifrunner.gnm1.ann1.567MYZ Arachis hypogaea HOM05D003665 ORTHO05D004387 6.8e-200 701.4 473 75.1
Nitab4.5_0001997g0130 Nicotiana tabacum HOM05D003665 ORTHO05D004387 6.8e-200 701.4 567 65.6
Sp4g11190 Schrenkiella parvula HOM05D003665 ORTHO05D004387 1.2e-199 700.7 548 65.1
CARHR121340 Cardamine hirsuta HOM05D003665 ORTHO05D004387 5.8e-199 698.4 529 66.5
AL4G21640 Arabidopsis lyrata HOM05D003665 ORTHO05D004387 1.7e-198 696.8 529 66.9
COL.COLO4_18330 Corchorus olitorius HOM05D003665 ORTHO05D004387 8.3e-198 694.5 455 76.7
SEGI_12034 Sequoiadendron giganteum HOM05D003665 ORTHO05D004387 8.3e-198 694.5 547 66.4
AT2G28390 Arabidopsis thaliana HOM05D003665 ORTHO05D004387 2.4e-197 693.0 563 63.4
BcaC01g04965 Brassica carinata HOM05D003665 ORTHO05D004387 2.4e-197 693.0 540 65.4
Carub.0004s0931 Capsella rubella HOM05D003665 ORTHO05D004387 9.2e-197 691.0 578 62.1
A03p26380 Brassica napus HOM05D003665 ORTHO05D004387 2.0e-196 689.9 519 66.5
BraA03t11853Z Brassica rapa HOM05D003665 ORTHO05D004387 2.0e-196 689.9 514 67.1
arahy.Tifrunner.gnm1.ann1.IYQC31 Arachis hypogaea HOM05D003665 ORTHO05D004387 6.0e-196 688.3 498 70.1
Sc06g0010260 Simmondsia chinensis HOM05D003665 ORTHO05D004387 1.3e-195 687.2 525 69.0
C03p31650 Brassica napus HOM05D003665 ORTHO05D004387 1.7e-195 686.8 498 68.3
DCAR_006064 Daucus carota HOM05D003665 ORTHO05D004387 1.7e-195 686.8 514 70.8
Lsat_1_v5_gn_2_100120 Lactuca sativa HOM05D003665 ORTHO05D004387 1.7e-195 686.8 525 67.0
HanXRQChr14g0452781 Helianthus annuus HOM05D003665 ORTHO05D004387 3.0e-195 686.0 517 68.5
Actinidia07137 Actinidia chinensis HOM05D003665 ORTHO05D004387 3.9e-195 685.6 527 69.1
BcaB01g03101 Brassica carinata HOM05D003665 ORTHO05D004387 3.9e-195 685.6 549 64.8
Aa31LG5G7830 Aethionema arabicum HOM05D003665 ORTHO05D004387 6.6e-195 684.9 540 64.8
BolC3t15507H Brassica oleracea HOM05D003665 ORTHO05D004387 8.6e-195 684.5 551 64.1
arahy.Tifrunner.gnm1.ann1.RTB9TW Arachis hypogaea HOM05D003665 ORTHO05D004387 1.5e-194 683.7 496 69.8
C04p23090 Brassica napus HOM05D003665 ORTHO05D004387 3.3e-194 682.6 492 68.9
Lsat_1_v5_gn_1_64201 Lactuca sativa HOM05D003665 ORTHO05D004387 1.2e-193 680.6 558 64.9
BolC4t23802H Brassica oleracea HOM05D003665 ORTHO05D004387 4.7e-193 678.7 495 68.1
A07p18960 Brassica napus HOM05D003665 ORTHO05D004387 8.1e-193 677.9 492 68.7
BraA07t29601Z Brassica rapa HOM05D003665 ORTHO05D004387 3.1e-192 676.0 497 67.8
BcaB06g25420 Brassica carinata HOM05D003665 ORTHO05D004387 1.5e-191 673.7 511 67.3
arahy.Tifrunner.gnm1.ann1.B5LWM3 Arachis hypogaea HOM05D003665 ORTHO05D004387 7.1e-189 664.8 463 73.4
Ca_01409_v3 Cicer arietinum L. HOM05D003665 ORTHO05D004387 1.6e-188 663.7 471 72.4
Nitab4.5_0001195g0040 Nicotiana tabacum HOM05D003665 ORTHO05D004387 1.7e-187 660.2 559 63.7
Os01g0976000 Oryza sativa ssp. japonica HOM05D003665 ORTHO05D004387 7.3e-186 654.8 531 65.0
Ah.12g061180 Amaranthus hybridus HOM05D003665 ORTHO05D004387 4.3e-178 629.0 437 72.5
Gohir.D08G215600 Gossypium hirsutum HOM05D003665 ORTHO05D004387 1.2e-177 627.5 446 72.9
HPP92_006598 Vanilla planifolia HOM05D003665 ORTHO05D004387 3.6e-177 625.9 511 65.8
PGR102G1414 Punica granatum HOM05D003665 ORTHO05D004387 8.1e-177 624.8 534 62.4
SEGI_16973 Sequoiadendron giganteum HOM05D003665 ORTHO05D004387 1.5e-175 620.5 426 69.5
Hund03712 Selenicereus undatus HOM05D003665 ORTHO05D004387 2.1e-169 600.1 359 81.6
Mapoly0115s0070 Marchantia polymorpha HOM05D003665 ORTHO05D004387 2.0e-167 593.6 585 55.7
Nitab4.5_0005900g0050 Nicotiana tabacum HOM05D003665 ORTHO05D004387 4.3e-162 575.9 578 58.0
SMO356G0046 Selaginella moellendorffii HOM05D003665 ORTHO05D004387 1.9e-157 560.5 538 54.5
Nitab4.5_0001211g0250 Nicotiana tabacum HOM05D003665 ORTHO05D004387 5.5e-157 558.9 615 54.6
Actinidia12926 Actinidia chinensis HOM05D003665 ORTHO05D004387 1.0e-155 554.7 332 81.9
AagrBONN_evm.TU.Sc2ySwM_228.3586 Anthoceros agrestis HOM05D003665 ORTHO05D004387 3.3e-154 549.7 485 58.1
AUR62037705 Chenopodium quinoa HOM05D003665 ORTHO05D004387 5.3e-152 542.3 492 59.6
Lj2C1027G11 Lonicera japonica HOM05D003665 ORTHO05D004387 9.0e-152 541.6 562 56.2
Pp3c3_30360 Physcomitrium patens HOM05D003665 ORTHO05D004387 1.3e-150 537.7 603 50.1
AUR62020295 Chenopodium quinoa HOM05D003665 ORTHO05D004387 1.6e-148 530.8 462 61.7
AagrBONN_evm.TU.Sc2ySwM_117.1231 Anthoceros agrestis HOM05D003665 ORTHO05D004387 1.3e-145 521.2 479 56.2
Pp3c10_13820 Physcomitrium patens HOM05D003665 ORTHO05D004387 5.3e-144 515.8 556 52.9
Peaxi162Scf00106g00431 Petunia axillaris HOM05D003665 ORTHO05D004387 5.5e-141 505.8 456 60.3
Actinidia13994 Actinidia chinensis HOM05D003665 ORTHO05D004387 3.0e-139 500.0 306 80.7
Sabra04G0142700 Salix brachista HOM05D003665 ORTHO05D004387 9.1e-136 488.4 352 71.3
unitig_899.g14918 Utricularia gibba HOM05D003665 ORTHO05D004387 5.1e-131 472.6 525 52.6
CDE08G0353 Ceratophyllum demersum HOM05D003665 ORTHO05D004387 3.2e-125 453.4 287 78.0
PGSC0003DMG400019504 Solanum tuberosum HOM05D003665 ORTHO05D004387 6.7e-123 445.7 326 73.0
Zm00001eb139700 Zea mays HOM05D003665 ORTHO05D004387 4.7e-116 422.9 305 68.9
CAN.G479.67 Capsicum annuum HOM05D003665 ORTHO05D004387 3.6e-108 396.7 328 66.5
BcaB06g25423 Brassica carinata HOM05D003665 ORTHO05D004387 1.6e-92 344.7 344 56.1
Atru.chr3.3619 Acer truncatum HOM05D003665 ORTHO05D004387 5.0e-86 323.2 224 70.1
CDE08G1291 Ceratophyllum demersum HOM05D003665 ORTHO05D004387 7.3e-77 292.7 302 57.9
CBR_g29308 Chara braunii HOM05D000019 ORTHO05D000002 1.9e-72 278.1 211 63.5
CDE02G0373 Ceratophyllum demersum HOM05D003665 ORTHO05D004387 7.1e-72 276.2 194 70.6
Lsat_1_v5_gn_8_29480 Lactuca sativa HOM05D003665 ORTHO05D004387 5.4e-64 250.0 163 76.1
CDE02G1163 Ceratophyllum demersum HOM05D003665 ORTHO05D004387 1.3e-60 238.8 302 50.3
CAN.G479.68 Capsicum annuum HOM05D000222 ORTHO05D004387 1.0e-54 219.2 153 69.3
Cre03.g154500 Chlamydomonas reinhardtii HOM05D003665 ORTHO05D004387 3.3e-53 214.2 270 44.8
TPR.G35439 Trifolium pratense HOM05D003665 ORTHO05D004387 5.3e-51 206.8 144 70.1
Lsat_1_v5_gn_6_45780 Lactuca sativa HOM05D003665 ORTHO05D004387 2.0e-50 204.9 133 75.2
Lsat_1_v5_gn_6_80301 Lactuca sativa HOM05D003665 ORTHO05D004387 3.4e-50 204.1 140 72.1
MCO05G084 Micromonas commoda HOM05D003665 ORTHO05D004387 5.8e-50 203.4 601 26.3
Actinidia13995 Actinidia chinensis HOM05D003665 ORTHO05D004387 9.3e-48 196.1 105 86.7
Lsat_1_v5_gn_8_31621 Lactuca sativa HOM05D003665 ORTHO05D004387 2.1e-47 194.9 132 72.0
Lsat_1_v5_gn_6_39960 Lactuca sativa HOM05D003665 ORTHO05D004387 4.8e-44 183.7 123 74.0
Duzib235G1059 Durio zibethinus HOM05D003665 ORTHO05D004387 1.9e-40 171.8 202 52.5
Cfa025752 Carpinus fangiana HOM05D003665 ORTHO05D004387 8.7e-38 162.9 581 26.2
arahy.Tifrunner.gnm1.ann1.3H693L Arachis hypogaea HOM05D003665 ORTHO05D004387 1.9e-37 161.8 126 65.9
SHI09320 Sapria himalayana HOM05D003665 ORTHO05D004387 3.7e-36 157.5 171 53.2
Duzib084G1104 Durio zibethinus HOM05D003665 ORTHO05D004387 7.9e-31 139.8 96 71.9
SHI09317 Sapria himalayana HOM05D003665 ORTHO05D004387 2.2e-28 131.7 78 78.2
Ca_23093_v3 Cicer arietinum L. HOM05D003665 ORTHO05D004387 2.0e-26 125.2 65 92.3
VMungo0225G0001 Vigna mungo HOM05D003665 ORTHO05D004387 7.9e-23 113.2 68 80.9
VMungo1074G0001 Vigna mungo HOM05D003665 ORTHO05D004387 1.5e-21 109.0 115 53.0
Glyma.11G146000 Glycine max HOM05D003665 ORTHO05D004387 2.0e-21 108.6 112 55.4
SHI09315 Sapria himalayana HOM05D003665 ORTHO05D004387 4.3e-21 107.5 66 75.8
BolC4t27275H Brassica oleracea HOM05D003665 ORTHO05D004387 3.1e-19 101.3 130 46.2
SHI09316 Sapria himalayana HOM05D003665 ORTHO05D004387 1.2e-18 99.4 63 71.4
Lalb_Chr22g0350671 Lupinus albus HOM05D003665 ORTHO05D004387 1.1e-11 76.3 43 86.0
TPR.G15544 Trifolium pratense HOM05D003665 ORTHO05D004387 2.2e-09 68.6 44 68.2
HanXRQChr06g0179151 Helianthus annuus HOM05D003665 ORTHO05D004387 1.9e-08 65.5 36 83.3
HanXRQChr04g0103101 Helianthus annuus HOM05D003665 ORTHO05D004387 1.2e-07 62.8 32 81.2
Lsat_1_v5_gn_9_20280 Lactuca sativa HOM05D005041 ORTHO05D002973 3.9e-06 57.8 32 87.5
SHI09319 Sapria himalayana HOM05D003665 ORTHO05D364815 6.7e-06 57.0 35 68.6


User provided reference genes

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