Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy4G02831 Aquilegia oxysepala HOM05D005297 ORTHO05D006545 3.1e-96 355.1 179 100.0
Nn2g14072 Nelumbo nucifera HOM05D005297 ORTHO05D006545 6.2e-81 304.3 179 83.8
QL02p014091 Quercus lobata HOM05D005297 ORTHO05D006545 1.7e-78 296.2 178 83.1
Manes.11G159700 Manihot esculenta HOM05D005297 ORTHO05D006545 6.4e-78 294.3 180 80.0
Potri.009G146100 Populus trichocarpa HOM05D005297 ORTHO05D006545 1.1e-77 293.5 180 81.7
MELO3C003122.2 Cucumis melo HOM05D005297 ORTHO05D006545 3.2e-77 292.0 178 83.7
Sabra09G0113000 Salix brachista HOM05D005297 ORTHO05D006545 3.2e-77 292.0 180 81.7
Sabra09G0115400 Salix brachista HOM05D005297 ORTHO05D006545 3.2e-77 292.0 180 81.7
Eucgr.J00466 Eucalyptus grandis HOM05D005297 ORTHO05D006545 4.2e-77 291.6 179 82.1
Gorai.001G120900 Gossypium raimondii HOM05D005297 ORTHO05D006545 5.4e-77 291.2 179 82.1
Atru.chr3.3335 Acer truncatum HOM05D005297 ORTHO05D006545 9.3e-77 290.4 179 80.4
THA.LOC104799541 Tarenaya hassleriana HOM05D005297 ORTHO05D006545 1.2e-76 290.0 179 79.9
TAR623G0730 Trochodendron aralioides HOM05D005297 ORTHO05D006545 1.2e-76 290.0 179 81.6
BcaC04g21280 Brassica carinata HOM05D005297 ORTHO05D006545 1.6e-76 289.7 179 79.3
Manes.14G159600 Manihot esculenta HOM05D005297 ORTHO05D006545 2.1e-76 289.3 180 80.0
CsaV3_4G024870 Cucumis sativus L. HOM05D005297 ORTHO05D006545 3.5e-76 288.5 178 83.1
Gohir.D07G112500 Gossypium hirsutum HOM05D005297 ORTHO05D006545 3.5e-76 288.5 179 81.0
Nitab4.5_0003532g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 3.5e-76 288.5 180 82.2
Gohir.A07G108700 Gossypium hirsutum HOM05D005297 ORTHO05D006545 6.0e-76 287.7 179 81.0
Gohir.A07G108780 Gossypium hirsutum HOM05D005297 ORTHO05D006545 6.0e-76 287.7 179 81.0
Rhsim13G0108000 Rhododendron simsii HOM05D005297 ORTHO05D006545 6.0e-76 287.7 179 79.3
Thecc.09G287800 Theobroma cacao HOM05D005297 ORTHO05D006545 6.0e-76 287.7 179 80.4
Duzib150G0109 Durio zibethinus HOM05D005297 ORTHO05D006545 1.0e-75 287.0 179 79.9
Carub.0006s3210 Capsella rubella HOM05D005297 ORTHO05D006545 1.3e-75 286.6 179 78.2
CAN.G644.6 Capsicum annuum HOM05D005297 ORTHO05D006545 1.3e-75 286.6 179 79.3
Aa31LG6G1540 Aethionema arabicum HOM05D005297 ORTHO05D006545 2.3e-75 285.8 179 77.7
CSS0010276 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 3.0e-75 285.4 183 79.2
PGR119G1280 Punica granatum HOM05D005297 ORTHO05D006545 3.0e-75 285.4 181 80.1
Solyc11g067150.2 Solanum lycopersicum HOM05D005297 ORTHO05D006545 3.9e-75 285.0 179 80.4
Sopen11g026830 Solanum pennellii HOM05D005297 ORTHO05D006545 3.9e-75 285.0 179 80.4
PGSC0003DMG400007409 Solanum tuberosum HOM05D005297 ORTHO05D006545 5.1e-75 284.6 180 80.0
Migut.N00940 Erythranthe guttata HOM05D005297 ORTHO05D006545 6.6e-75 284.3 179 78.8
CiPaw.13G138500 Carya illinoinensis HOM05D005297 ORTHO05D006545 1.1e-74 283.5 202 73.8
MBI17_g16878_MAGBIO Magnolia biondii HOM05D005297 ORTHO05D006545 1.1e-74 283.5 178 77.0
BcaB01g01797 Brassica carinata HOM05D005297 ORTHO05D006545 1.5e-74 283.1 179 77.7
CANSAT64G2769 Cannabis sativa HOM05D005297 ORTHO05D006545 1.5e-74 283.1 180 78.9
GSVIVG01036187001 Vitis vinifera HOM05D005297 ORTHO05D006545 1.5e-74 283.1 171 81.9
HPP92_006421 Vanilla planifolia HOM05D005297 ORTHO05D006545 4.3e-74 281.6 179 77.1
C09p33610 Brassica napus HOM05D002056 ORTHO05D002289 5.6e-74 281.2 174 79.3
CAN.G1177.8 Capsicum annuum HOM05D005297 ORTHO05D006545 5.6e-74 281.2 172 81.4
Thhalv10029010m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 5.6e-74 281.2 180 77.2
Sp6g04610 Schrenkiella parvula HOM05D005297 ORTHO05D006545 5.6e-74 281.2 179 77.1
unitig_736.g22397 Utricularia gibba HOM05D005297 ORTHO05D006545 7.3e-74 280.8 180 79.4
A09p26430 Brassica napus HOM05D005297 ORTHO05D006545 9.6e-74 280.4 174 79.3
CARHR253330 Cardamine hirsuta HOM05D005297 ORTHO05D006545 9.6e-74 280.4 184 75.0
HanXRQChr13g0408991 Helianthus annuus HOM05D005297 ORTHO05D006545 9.6e-74 280.4 181 77.9
AUR62009792 Chenopodium quinoa HOM05D005297 ORTHO05D006545 2.1e-73 279.3 178 77.5
Lsat_1_v5_gn_8_117180 Lactuca sativa HOM05D005297 ORTHO05D006545 2.1e-73 279.3 184 76.1
Peaxi162Scf00544g00918 Petunia axillaris HOM05D005297 ORTHO05D006545 2.8e-73 278.9 172 81.4
ECA236G0310 Erigeron canadensis HOM05D005297 ORTHO05D006545 3.6e-73 278.5 180 76.1
AT4G04190 Arabidopsis thaliana HOM05D005297 ORTHO05D006545 4.8e-73 278.1 185 73.5
Nitab4.5_0021448g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 4.8e-73 278.1 172 82.6
AL6G47810 Arabidopsis lyrata HOM05D005297 ORTHO05D006545 6.2e-73 277.7 189 73.5
vmacro03296 Vaccinium macrocarpon HOM05D005297 ORTHO05D006545 6.2e-73 277.7 183 76.0
Haze_23424 Corylus avellana HOM05D005297 ORTHO05D006545 8.1e-73 277.3 166 83.1
PSO384G0067 Papaver somniferum HOM05D005297 ORTHO05D006545 8.1e-73 277.3 177 78.5
MSTRG.18743 Avicennia marina HOM05D005297 ORTHO05D006545 1.4e-72 276.6 179 77.1
PSO425G0036 Papaver somniferum HOM05D005297 ORTHO05D006545 1.4e-72 276.6 177 79.1
Dinv29444 Davidia involucrata HOM05D005297 ORTHO05D006545 1.8e-72 276.2 160 85.6
Hund18738 Selenicereus undatus HOM05D005297 ORTHO05D006545 3.1e-72 275.4 179 76.5
SGA_v2.0_scaffold147G36360 Striga asiatica HOM05D005297 ORTHO05D006545 3.1e-72 275.4 178 77.0
Zm00001eb084080 Zea mays HOM05D005297 ORTHO05D006545 3.1e-72 275.4 181 75.7
EL10Ac7g15793 Beta vulgaris HOM05D005297 ORTHO05D006545 5.3e-72 274.6 178 75.8
SalBow6G5239 Salvia bowleyana HOM05D005297 ORTHO05D006545 5.3e-72 274.6 179 77.7
RcHm_v2.0_Chr5g0054901 Rosa chinensis HOM05D005297 ORTHO05D006545 1.5e-71 273.1 159 83.6
BolC9t56195H Brassica oleracea HOM05D002056 ORTHO05D002289 3.4e-71 271.9 168 79.2
RcHm_v2.0_Chr5g0054661 Rosa chinensis HOM05D005297 ORTHO05D006545 4.5e-71 271.6 159 83.0
BraA09t38217Z Brassica rapa HOM05D005297 ORTHO05D006545 5.8e-71 271.2 168 79.2
Sp7g17550 Schrenkiella parvula HOM05D005297 ORTHO05D006545 7.6e-71 270.8 181 76.2
FAN21G1663 Fragaria x ananassa HOM05D005297 ORTHO05D006545 9.9e-71 270.4 159 83.6
Sc21g0007210 Simmondsia chinensis HOM05D005297 ORTHO05D006545 9.9e-71 270.4 159 83.0
Medtr0227s0030 Medicago truncatula HOM05D005297 ORTHO05D006545 1.3e-70 270.0 159 83.0
PSO170G0247 Papaver somniferum HOM05D005297 ORTHO05D006545 1.3e-70 270.0 174 76.4
Ciclev10029400m.g Citrus clementina HOM05D005297 ORTHO05D006545 1.7e-70 269.6 180 76.7
Lalb_Chr24g0395231 Lupinus albus HOM05D005297 ORTHO05D006545 1.7e-70 269.6 158 81.0
Medtr4g088775 Medicago truncatula HOM05D005297 ORTHO05D006545 1.7e-70 269.6 159 83.0
Prupe.6G124400 Prunus persica HOM05D005297 ORTHO05D006545 1.7e-70 269.6 160 81.9
Sc15g0007560 Simmondsia chinensis HOM05D005297 ORTHO05D006545 2.2e-70 269.2 177 75.7
FAN16G3468 Fragaria x ananassa HOM05D005297 ORTHO05D006545 2.9e-70 268.9 159 83.0
MD11G1160800 Malus domestica HOM05D005297 ORTHO05D006545 4.9e-70 268.1 160 80.6
Psat2g130440 Pisum sativum HOM05D005297 ORTHO05D006545 8.4e-70 267.3 159 83.0
Os04g0410300 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 1.1e-69 266.9 182 73.6
ATR0820G241 Amborella trichopoda HOM05D005297 ORTHO05D006545 1.4e-69 266.5 169 78.1
PSO801G0702 Papaver somniferum HOM05D005297 ORTHO05D006545 1.4e-69 266.5 177 75.7
Cpa.g.sc32.130 Carica papaya HOM05D005297 ORTHO05D006545 2.4e-69 265.8 171 78.9
Lj2g0006626 Lotus japonicus HOM05D005297 ORTHO05D006545 5.4e-69 264.6 158 81.0
Cc01_g09520 Coffea canephora HOM05D005297 ORTHO05D006545 9.3e-69 263.8 171 77.2
FvH4_3g29610 Fragaria vesca HOM05D005297 ORTHO05D006545 1.2e-68 263.5 159 81.8
FAN11G1678 Fragaria x ananassa HOM05D005297 ORTHO05D006545 1.2e-68 263.5 159 81.8
Hma1.2p1_0305F.1_g119460 Hydrangea macrophylla HOM05D005297 ORTHO05D006545 1.2e-68 263.5 151 86.1
Lsat_1_v5_gn_8_90380 Lactuca sativa HOM05D005297 ORTHO05D006545 1.2e-68 263.5 173 76.3
PSO339G0592 Papaver somniferum HOM05D005297 ORTHO05D006545 3.5e-68 261.9 176 73.9
arahy.Tifrunner.gnm1.ann1.CT6H1M Arachis hypogaea HOM05D005297 ORTHO05D006545 4.6e-68 261.5 159 78.6
Glyma.12G183000 Glycine max HOM05D005297 ORTHO05D006545 6.0e-68 261.2 160 78.8
Glyma.13G318100 Glycine max HOM05D005297 ORTHO05D006545 1.3e-67 260.0 159 79.2
Sed0022012 Sechium edule HOM05D005297 ORTHO05D006545 3.0e-67 258.8 145 87.6
CSS0048581 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 6.7e-67 257.7 145 86.2
TWI79G0927 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 6.7e-67 257.7 179 72.1
Phvul.005G125900 Phaseolus vulgaris HOM05D005297 ORTHO05D006545 1.1e-66 256.9 160 77.5
TWI79G0105 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 1.9e-66 256.1 179 72.1
arahy.Tifrunner.gnm1.ann1.Q11QUE Arachis hypogaea HOM05D005297 ORTHO05D006545 1.3e-65 253.4 171 74.9
SEGI_17822 Sequoiadendron giganteum HOM05D005297 ORTHO05D006545 1.6e-65 253.1 176 69.9
TAR369G0691 Trochodendron aralioides HOM05D005297 ORTHO05D006545 2.1e-65 252.7 148 84.5
PSO339G2689 Papaver somniferum HOM05D005297 ORTHO05D006545 2.8e-65 252.3 158 78.5
PSO782G5408 Papaver somniferum HOM05D005297 ORTHO05D006545 2.8e-65 252.3 174 73.6
Rhsim05G0032500 Rhododendron simsii HOM05D005297 ORTHO05D006545 2.8e-65 252.3 144 84.0
Ca_09074_v3 Cicer arietinum L. HOM05D005297 ORTHO05D006545 4.8e-65 251.5 146 83.6
Rhsim13G0108200 Rhododendron simsii HOM05D005297 ORTHO05D006545 1.4e-64 250.0 142 83.8
VMungo1080G0855 Vigna mungo HOM05D005392 ORTHO05D006709 1.8e-64 249.6 145 82.1
COL.COLO4_19936 Corchorus olitorius HOM05D005297 ORTHO05D006545 2.2e-62 242.7 137 86.9
arahy.Tifrunner.gnm1.ann1.K2P72U Arachis hypogaea HOM05D005780 ORTHO05D006545 2.9e-62 242.3 140 82.1
Thhalv10005498m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 6.5e-62 241.1 159 74.8
AUR62039239 Chenopodium quinoa HOM05D005297 ORTHO05D006545 1.1e-61 240.4 175 71.4
Nitab4.5_0024933g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 1.2e-60 236.9 137 85.4
Os01g0191000 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 2.1e-60 236.1 155 74.2
Rhsim13G0107700 Rhododendron simsii HOM05D005297 ORTHO05D006545 1.0e-59 233.8 179 69.3
Medtr4g073910 Medicago truncatula HOM05D005297 ORTHO05D006545 1.7e-54 216.5 135 80.7
Pp3c27_2700 Physcomitrium patens HOM05D005297 ORTHO05D006545 2.7e-52 209.1 169 59.2
Actinidia24196 Actinidia chinensis HOM05D005392 ORTHO05D006709 3.5e-52 208.8 164 65.9
CSS0004713 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 3.5e-52 208.8 158 69.0
Mapoly0068s0054 Marchantia polymorpha HOM05D005297 ORTHO05D006545 1.3e-51 206.8 178 57.9
Lj2A987T34 Lonicera japonica HOM05D005297 ORTHO05D006545 1.5e-47 193.4 109 85.3
CDE11G0319 Ceratophyllum demersum HOM05D005297 ORTHO05D006545 1.0e-46 190.7 117 79.5
Duzib168G0206 Durio zibethinus HOM05D005297 ORTHO05D006545 5.0e-46 188.3 117 80.3
arahy.Tifrunner.gnm1.ann1.S3X3J8 Arachis hypogaea HOM05D005297 ORTHO05D006545 8.5e-46 187.6 110 79.1
MD03G1139300 Malus domestica HOM05D005297 ORTHO05D006545 6.1e-44 181.4 141 66.7
PSO782G3247 Papaver somniferum HOM05D005297 ORTHO05D006545 6.1e-44 181.4 128 72.7
TPR.G2691 Trifolium pratense HOM05D005297 ORTHO05D006545 8.2e-41 171.0 113 75.2
Ca_05140_v3 Cicer arietinum L. HOM05D005297 ORTHO05D012218 3.2e-37 159.1 100 77.0
CBR_g82609 Chara braunii HOM05D005297 ORTHO05D006545 1.2e-36 157.1 151 51.7
DCAR_001100 Daucus carota HOM05D005297 ORTHO05D006545 1.2e-36 157.1 129 62.0
SHI11151 Sapria himalayana HOM05D005297 ORTHO05D000023 1.4e-35 153.7 111 65.8
Gorai.006G055300 Gossypium raimondii HOM05D005297 ORTHO05D006545 2.0e-34 149.8 77 89.6
Gorai.003G055900 Gossypium raimondii HOM05D005297 ORTHO05D006545 4.8e-33 145.2 119 63.9
Gorai.003G076100 Gossypium raimondii HOM05D005297 ORTHO05D006545 6.3e-33 144.8 119 63.9
Gorai.005G178100 Gossypium raimondii HOM05D005297 ORTHO05D006545 8.5e-30 134.4 77 79.2
arahy.Tifrunner.gnm1.ann1.LDL4WN Arachis hypogaea HOM05D005297 ORTHO05D006545 4.2e-29 132.1 93 68.8
Gohir.D06G133032 Gossypium hirsutum HOM05D005297 ORTHO05D006545 4.2e-29 132.1 68 88.2
Gohir.D09G053026 Gossypium hirsutum HOM05D005297 ORTHO05D006545 4.2e-29 132.1 77 81.8
Oeu050204.1 Olea europaea HOM05D005297 ORTHO05D006545 3.6e-28 129.0 188 46.8
CSS0043339 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 3.0e-27 125.9 153 47.1
RcHm_v2.0_Chr5g0054771 Rosa chinensis HOM05D005297 ORTHO05D006545 4.1e-24 115.5 120 59.2
QL02p014117 Quercus lobata HOM05D005297 ORTHO05D006545 1.2e-23 114.0 64 85.9
Oeu046141.1 Olea europaea HOM05D005297 ORTHO05D006545 1.6e-23 113.6 85 74.1
Gohir.D02G158550 Gossypium hirsutum HOM05D005297 ORTHO05D006545 1.4e-19 100.5 77 64.9
C02p40370 Brassica napus HOM05D000848 ORTHO05D000007 4.0e-19 99.0 66 66.7
TPR.G32973 Trifolium pratense HOM05D005297 ORTHO05D006545 2.8e-17 92.8 52 84.6
BolC2t10071H Brassica oleracea HOM05D005297 ORTHO05D000007 1.8e-16 90.1 58 70.7
Psat2g121320 Pisum sativum HOM05D005297 ORTHO05D006545 3.5e-15 85.9 58 63.8
PSO541G0924 Papaver somniferum HOM05D005117 ORTHO05D005956 3.5e-07 59.3 36 80.6


User provided reference genes

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