Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy4G02760 Aquilegia oxysepala HOM05D004934 ORTHO05D005924 1.6e-53 212.6 116 100.0
TAR633G0561 Trochodendron aralioides HOM05D004934 ORTHO05D005924 1.1e-41 173.3 116 81.0
Nn2g14177 Nelumbo nucifera HOM05D004934 ORTHO05D005924 2.5e-38 162.2 116 73.3
Dinv22836 Davidia involucrata HOM05D004934 ORTHO05D005924 2.3e-36 155.6 116 75.0
Hma1.2p1_0587F.1_g184270 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 6.7e-36 154.1 116 71.6
Dinv42546 Davidia involucrata HOM05D004934 ORTHO05D005924 1.1e-35 153.3 117 74.4
Hund18761 Selenicereus undatus HOM05D004934 ORTHO05D005924 1.5e-35 152.9 116 71.6
GSVIVG01036114001 Vitis vinifera HOM05D004934 ORTHO05D005924 9.7e-35 150.2 114 69.3
PGR102G3359 Punica granatum HOM05D004934 ORTHO05D005924 2.2e-34 149.1 119 69.7
Actinidia35468 Actinidia chinensis HOM05D004934 ORTHO05D005924 3.7e-34 148.3 117 70.1
Manes.04G003100 Manihot esculenta HOM05D004934 ORTHO05D005924 1.8e-33 146.0 121 69.4
FAN13G2036 Fragaria x ananassa HOM05D004934 ORTHO05D005924 2.4e-33 145.6 120 68.3
FvH4_5g26820 Fragaria vesca HOM05D004934 ORTHO05D005924 4.1e-33 144.8 120 68.3
FAN04G2654 Fragaria x ananassa HOM05D004934 ORTHO05D005924 4.1e-33 144.8 120 68.3
ATR0609G030 Amborella trichopoda HOM05D004934 ORTHO05D005924 5.3e-33 144.4 118 67.8
TAR636G0935 Trochodendron aralioides HOM05D004934 ORTHO05D005924 5.3e-33 144.4 113 71.7
Lalb_Chr03g0028151 Lupinus albus HOM05D004934 ORTHO05D005924 1.2e-32 143.3 121 69.4
RcHm_v2.0_Chr5g0045641 Rosa chinensis HOM05D004934 ORTHO05D005924 1.2e-32 143.3 116 69.8
Nitab4.5_0002914g0100 Nicotiana tabacum HOM05D004934 ORTHO05D005924 2.0e-32 142.5 117 70.1
Prupe.6G131900 Prunus persica HOM05D004934 ORTHO05D005924 2.6e-32 142.1 118 67.8
Nitab4.5_0000755g0070 Nicotiana tabacum HOM05D004934 ORTHO05D005924 3.5e-32 141.7 118 69.5
Migut.N02487 Erythranthe guttata HOM05D004934 ORTHO05D005924 5.9e-32 141.0 116 68.1
Peaxi162Scf00040g00023 Petunia axillaris HOM05D004934 ORTHO05D005924 5.9e-32 141.0 116 68.1
CiPaw.14G099500 Carya illinoinensis HOM05D004934 ORTHO05D005924 1.0e-31 140.2 118 67.8
Thecc.09G281300 Theobroma cacao HOM05D004934 ORTHO05D005924 1.0e-31 140.2 120 68.3
Eucgr.B03844 Eucalyptus grandis HOM05D004934 ORTHO05D005924 1.3e-31 139.8 117 68.4
EL10Ac7g15830 Beta vulgaris HOM05D004934 ORTHO05D005924 3.8e-31 138.3 117 65.0
Cfa010007 Carpinus fangiana HOM05D004934 ORTHO05D005924 3.8e-31 138.3 120 65.8
PGSC0003DMG400026356 Solanum tuberosum HOM05D004934 ORTHO05D005924 3.8e-31 138.3 116 69.8
TPR.G17236 Trifolium pratense HOM05D004934 ORTHO05D005924 5.0e-31 137.9 121 66.1
Ca_19413_v3 Cicer arietinum L. HOM05D004934 ORTHO05D005924 8.5e-31 137.1 121 68.6
TWI31G0143 Tripterygium wilfordii HOM05D004934 ORTHO05D005924 8.5e-31 137.1 121 64.5
VMungo1127G1656 Vigna mungo HOM05D004934 ORTHO05D005924 1.1e-30 136.7 121 68.6
Cc01_g09040 Coffea canephora HOM05D004934 ORTHO05D005924 1.5e-30 136.3 117 68.4
Solyc11g068510.2 Solanum lycopersicum HOM05D004934 ORTHO05D005924 1.5e-30 136.3 116 68.1
Sopen11g027220 Solanum pennellii HOM05D004934 ORTHO05D005924 1.5e-30 136.3 116 68.1
MSTRG.17705 Avicennia marina HOM05D004934 ORTHO05D005924 2.5e-30 135.6 118 64.4
Nitab4.5_0012586g0010 Nicotiana tabacum HOM05D004934 ORTHO05D005924 2.5e-30 135.6 118 68.6
AUR62036196 Chenopodium quinoa HOM05D004934 ORTHO05D005924 3.2e-30 135.2 117 64.1
Sed0020870 Sechium edule HOM05D004934 ORTHO05D005924 4.2e-30 134.8 120 68.3
AUR62009749 Chenopodium quinoa HOM05D004934 ORTHO05D005924 5.5e-30 134.4 117 63.2
Glyma.12G090500 Glycine max HOM05D004934 ORTHO05D005924 5.5e-30 134.4 123 69.9
Glyma.11G182300 Glycine max HOM05D004934 ORTHO05D005924 9.4e-30 133.7 121 69.4
Nitab4.5_0000227g0280 Nicotiana tabacum HOM05D004934 ORTHO05D005924 1.2e-29 133.3 117 68.4
vmacro14353 Vaccinium macrocarpon HOM05D004934 ORTHO05D005924 1.2e-29 133.3 116 61.2
Gohir.D08G015900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 1.6e-29 132.9 117 65.0
MSTRG.12371 Avicennia marina HOM05D004934 ORTHO05D005924 2.1e-29 132.5 119 67.2
CsaV3_1G014900 Cucumis sativus L. HOM05D004934 ORTHO05D005924 2.1e-29 132.5 121 66.1
Sc06g0008770 Simmondsia chinensis HOM05D004934 ORTHO05D005924 2.1e-29 132.5 118 66.9
CAN.G1524.5 Capsicum annuum HOM05D004934 ORTHO05D005924 2.7e-29 132.1 118 66.1
Duzib168G1921 Durio zibethinus HOM05D004934 ORTHO05D005924 3.6e-29 131.7 121 65.3
QL01p012137 Quercus lobata HOM05D004934 ORTHO05D005924 3.6e-29 131.7 119 63.9
Gorai.004G010200 Gossypium raimondii HOM05D004934 ORTHO05D005924 4.7e-29 131.3 116 64.7
Phvul.011G095100 Phaseolus vulgaris HOM05D004934 ORTHO05D005924 6.1e-29 131.0 121 66.1
ClCG01G011970 Citrullus lanatus HOM05D004934 ORTHO05D005924 8.0e-29 130.6 116 68.1
Ciclev10029605m.g Citrus clementina HOM05D004934 ORTHO05D005924 8.0e-29 130.6 116 62.9
MD11G1166100 Malus domestica HOM05D004934 ORTHO05D005924 1.8e-28 129.4 114 64.0
RcHm_v2.0_Chr5g0046361 Rosa chinensis HOM05D004934 ORTHO05D005924 2.3e-28 129.0 124 62.9
Medtr4g052910 Medicago truncatula HOM05D004934 ORTHO05D005924 3.0e-28 128.6 121 62.8
arahy.Tifrunner.gnm1.ann1.Q13MWU Arachis hypogaea HOM05D004934 ORTHO05D005924 3.9e-28 128.3 121 64.5
arahy.Tifrunner.gnm1.ann1.Q2H7V9 Arachis hypogaea HOM05D004934 ORTHO05D005924 3.9e-28 128.3 121 64.5
CSS0038235 Camellia sinensis var. sinensis HOM05D004934 ORTHO05D005924 3.9e-28 128.3 102 71.6
Lj3g0027260 Lotus japonicus HOM05D004934 ORTHO05D005924 3.9e-28 128.3 118 65.3
Gohir.A08G005600 Gossypium hirsutum HOM05D004934 ORTHO05D005924 8.8e-28 127.1 116 63.8
Oeu031471.1 Olea europaea HOM05D004934 ORTHO05D005924 1.5e-27 126.3 119 61.3
Zm00001eb369670 Zea mays HOM05D004934 ORTHO05D005924 2.0e-27 125.9 119 62.2
Lalb_Chr01g0004881 Lupinus albus HOM05D004934 ORTHO05D005924 2.6e-27 125.6 121 64.5
Lsat_1_v5_gn_6_38900 Lactuca sativa HOM05D004934 ORTHO05D005924 3.3e-27 125.2 118 65.3
CANSAT54G1198 Cannabis sativa HOM05D004934 ORTHO05D005924 5.7e-27 124.4 129 62.0
Potri.009G163100 Populus trichocarpa HOM05D004934 ORTHO05D005924 9.7e-27 123.6 119 64.7
Duzib170G0221 Durio zibethinus HOM05D004934 ORTHO05D005924 1.3e-26 123.2 115 63.5
PSO339G6001 Papaver somniferum HOM05D004934 ORTHO05D005924 1.3e-26 123.2 112 60.7
PSO801G0293 Papaver somniferum HOM05D004934 ORTHO05D005924 1.7e-26 122.9 112 59.8
ECA233G4139 Erigeron canadensis HOM05D004934 ORTHO05D005924 2.2e-26 122.5 116 61.2
Sabra09G0127300 Salix brachista HOM05D004934 ORTHO05D005924 2.2e-26 122.5 125 64.0
Zm00001eb151060 Zea mays HOM05D004934 ORTHO05D005924 2.2e-26 122.5 119 61.3
Atru.chr3.3218 Acer truncatum HOM05D004934 ORTHO05D005924 4.8e-26 121.3 111 64.9
Gohir.A09G096200 Gossypium hirsutum HOM05D004934 ORTHO05D005924 4.8e-26 121.3 118 64.4
THA.LOC104800543 Tarenaya hassleriana HOM05D004934 ORTHO05D005924 8.2e-26 120.6 120 60.0
Gohir.D09G095900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 1.1e-25 120.2 118 63.6
MD03G1147400 Malus domestica HOM05D004934 ORTHO05D005924 1.4e-25 119.8 114 62.3
Sabra04G0136300 Salix brachista HOM05D004934 ORTHO05D005924 2.4e-25 119.0 125 60.8
unitig_27.g25034 Utricularia gibba HOM05D004934 ORTHO05D005924 3.1e-25 118.6 111 61.3
Psat7g187720 Pisum sativum HOM05D004934 ORTHO05D005924 4.1e-25 118.2 121 61.2
Aqoxy2G01124 Aquilegia oxysepala HOM05D004934 ORTHO05D005924 5.3e-25 117.9 104 64.4
HanXRQChr11g0324151 Helianthus annuus HOM05D004934 ORTHO05D005924 4.5e-24 114.8 123 57.7
Carub.0004s0847 Capsella rubella HOM05D004934 ORTHO05D005924 1.0e-23 113.6 118 61.0
HanXRQChr13g0397481 Helianthus annuus HOM05D004934 ORTHO05D005924 2.9e-23 112.1 116 57.8
Lsat_1_v5_gn_2_59421 Lactuca sativa HOM05D004934 ORTHO05D005924 6.5e-23 110.9 117 59.8
Rhsim13G0112500 Rhododendron simsii HOM05D004934 ORTHO05D005924 1.9e-22 109.4 153 50.3
Peaxi162Scf00757g00422 Petunia axillaris HOM05D004934 ORTHO05D005924 2.5e-22 109.0 113 61.1
Potri.004G201700 Populus trichocarpa HOM05D004934 ORTHO05D005924 3.2e-22 108.6 122 59.8
AL4G22570 Arabidopsis lyrata HOM05D004934 ORTHO05D005924 1.2e-21 106.7 121 57.0
AT2G27730 Arabidopsis thaliana HOM05D004934 ORTHO05D005924 1.2e-21 106.7 116 57.8
MBI05_g05303_MAGBIO Magnolia biondii HOM05D004934 ORTHO05D005924 1.6e-21 106.3 116 56.9
CDE12G0371 Ceratophyllum demersum HOM05D004622 ORTHO05D005431 2.7e-21 105.5 114 54.4
SGA_v2.0_scaffold295G47520 Striga asiatica HOM05D004934 ORTHO05D005924 3.6e-21 105.1 120 55.0
CDE04G1608 Ceratophyllum demersum HOM05D004934 ORTHO05D005924 8.0e-21 104.0 123 53.7
BcaB06g28164 Brassica carinata HOM05D004934 ORTHO05D005924 1.0e-20 103.6 113 57.5
Aa31LG5G8260 Aethionema arabicum HOM05D004934 ORTHO05D005924 1.4e-20 103.2 114 56.1
FAN11G2484 Fragaria x ananassa HOM05D004934 ORTHO05D005924 2.3e-20 102.4 120 52.5
Sp4g10520 Schrenkiella parvula HOM05D004934 ORTHO05D005924 3.0e-20 102.1 116 56.9
BcaC02g10898 Brassica carinata HOM05D004934 ORTHO05D005924 4.0e-20 101.7 111 55.0
A07p18350 Brassica napus HOM05D004934 ORTHO05D005924 4.0e-20 101.7 111 56.8
C04p23930 Brassica napus HOM05D004934 ORTHO05D005924 4.0e-20 101.7 111 55.0
BolC4t23886H Brassica oleracea HOM05D004934 ORTHO05D005924 4.0e-20 101.7 111 55.0
FvH4_3g25100 Fragaria vesca HOM05D004934 ORTHO05D005924 4.0e-20 101.7 120 52.5
CARHR120400 Cardamine hirsuta HOM05D004934 ORTHO05D005924 5.2e-20 101.3 116 54.3
BcaC02g08235 Brassica carinata HOM05D004934 ORTHO05D005924 8.8e-20 100.5 114 55.3
C04p56900 Brassica napus HOM05D004934 ORTHO05D005924 8.8e-20 100.5 114 55.3
BolC4t27225H Brassica oleracea HOM05D004934 ORTHO05D005924 8.8e-20 100.5 114 55.3
BraA07t29551Z Brassica rapa HOM05D004934 ORTHO05D005924 1.2e-19 100.1 113 55.8
SGA_v2.0_scaffold177G39414 Striga asiatica HOM05D004934 ORTHO05D005924 1.2e-19 100.1 119 57.1
A04p21090 Brassica napus HOM05D004934 ORTHO05D005924 4.4e-19 98.2 108 55.6
BraA04t17678Z Brassica rapa HOM05D004934 ORTHO05D005924 4.4e-19 98.2 108 55.6
Oeu035567.1 Olea europaea HOM05D004934 ORTHO05D005924 4.4e-19 98.2 118 52.5
Thhalv10017451m.g Eutrema salsugineum HOM05D004934 ORTHO05D005924 1.3e-18 96.7 116 55.2
PSO339G2388 Papaver somniferum HOM05D004934 ORTHO05D005924 2.8e-18 95.5 114 57.0
PSO384G4162 Papaver somniferum HOM05D004934 ORTHO05D005924 2.8e-18 95.5 110 55.5
SalBow3G2207 Salvia bowleyana HOM05D004934 ORTHO05D005924 3.7e-18 95.1 123 50.4
BcaB02g10110 Brassica carinata HOM05D004934 ORTHO05D005924 4.8e-18 94.7 110 53.6
FAN25G2937 Fragaria x ananassa HOM05D004934 ORTHO05D005924 2.4e-17 92.4 82 64.6
Os08g0559000 Oryza sativa ssp. japonica HOM05D004934 ORTHO05D005924 5.3e-17 91.3 117 53.0
Zm00001eb343400 Zea mays HOM05D004934 ORTHO05D005924 4.5e-16 88.2 87 57.5
DCAR_030570 Daucus carota HOM05D004934 ORTHO05D005924 5.9e-16 87.8 69 72.5
DCAR_010342 Daucus carota HOM05D004934 ORTHO05D005924 7.7e-16 87.4 87 63.2
Zm00001eb416000 Zea mays HOM05D004934 ORTHO05D005924 1.0e-15 87.0 87 60.9
ECA238G4733 Erigeron canadensis HOM05D004934 ORTHO05D005924 1.3e-15 86.7 120 50.0
BcaC02g10901 Brassica carinata HOM05D004934 ORTHO05D005924 1.9e-14 82.8 105 52.4
Hma1.2p1_0587F.1_g184260 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 1.9e-14 82.8 69 60.9
Hma1.2p1_3516F.1_g336514 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 1.9e-14 82.8 69 60.9
Cpa.g.sc32.36 Carica papaya HOM05D004934 ORTHO05D005924 1.6e-13 79.7 71 59.2
HPP92_003219 Vanilla planifolia HOM05D004934 ORTHO05D005924 2.1e-13 79.3 82 58.5
Hma1.2p1_0413F.1_g147325 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 4.7e-13 78.2 70 55.7
Os09g0568900 Oryza sativa ssp. japonica HOM05D004934 ORTHO05D005924 8.0e-13 77.4 83 57.8
Nn6g34871 Nelumbo nucifera HOM05D004934 ORTHO05D005924 5.2e-12 74.7 57 75.4
vmacro03322 Vaccinium macrocarpon HOM05D004934 ORTHO05D005924 6.8e-12 74.3 195 35.4
FAN21G3762 Fragaria x ananassa HOM05D004934 ORTHO05D005924 8.8e-12 73.9 78 61.5
Pp3c1_22500 Physcomitrium patens HOM05D004934 ORTHO05D005924 4.4e-11 71.6 107 48.6
MELO3C004698.2 Cucumis melo HOM05D004934 ORTHO05D005924 1.7e-10 69.7 101 47.5
Gorai.009G084700 Gossypium raimondii HOM05D004934 ORTHO05D005924 6.3e-10 67.8 79 55.7
Gohir.D05G082900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 2.4e-09 65.9 79 54.4
Gohir.A05G080000 Gossypium hirsutum HOM05D004934 ORTHO05D005924 4.1e-09 65.1 79 54.4
Cpa.g.sc32.38 Carica papaya HOM05D004934 ORTHO05D005924 2.3e-07 59.3 34 91.2
Pp3c14_2790 Physcomitrium patens HOM05D004934 ORTHO05D005924 2.3e-07 59.3 114 40.4
SEGI_07969 Sequoiadendron giganteum HOM05D004934 ORTHO05D005924 3.3e-06 55.5 43 72.1
HPP92_003218 Vanilla planifolia HOM05D004934 ORTHO05D005924 4.2e-06 55.1 34 79.4
AagrBONN_evm.TU.Sc2ySwM_228.2259 Anthoceros agrestis HOM05D004934 ORTHO05D005924 5.5e-06 54.7 121 36.4
ECA238G3836 Erigeron canadensis HOM05D000407 ORTHO05D001717 5.5e-06 54.7 46 58.7


User provided reference genes

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