Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy4G02752 Aquilegia oxysepala HOM05D004622 ORTHO05D005431 1.6e-138 496.1 252 100.0
TAR636G1327 Trochodendron aralioides HOM05D004622 ORTHO05D005431 4.3e-19 99.4 222 35.6
Lj2C965T2 Lonicera japonica HOM05D004622 ORTHO05D005431 2.3e-17 93.6 233 33.5
Gohir.D07G114300 Gossypium hirsutum HOM05D004622 ORTHO05D005431 3.4e-16 89.7 213 36.6
Manes.04G003000 Manihot esculenta HOM05D004622 ORTHO05D005431 1.4e-14 84.3 218 33.9
Cc01_g09000 Coffea canephora HOM05D004622 ORTHO05D005431 1.9e-14 84.0 260 33.5
Gohir.A07G110600 Gossypium hirsutum HOM05D004622 ORTHO05D005431 1.9e-14 84.0 242 35.5
Gorai.001G122600 Gossypium raimondii HOM05D004622 ORTHO05D005431 2.4e-14 83.6 234 34.6
Thecc.09G281500 Theobroma cacao HOM05D004622 ORTHO05D005431 2.4e-14 83.6 258 33.7
Aqoxy2G01109 Aquilegia oxysepala HOM05D004622 ORTHO05D005431 3.2e-14 83.2 232 32.8
Duzib168G0112 Durio zibethinus HOM05D004622 ORTHO05D005431 4.1e-14 82.8 242 33.9
Sabra09G0127000 Salix brachista HOM05D004622 ORTHO05D005431 7.1e-14 82.0 215 34.4
Potri.009G162800 Populus trichocarpa HOM05D004622 ORTHO05D005431 2.1e-13 80.5 196 32.7
Cfa010005 Carpinus fangiana HOM05D004622 ORTHO05D005431 3.5e-13 79.7 208 33.2
Manes.11G162600 Manihot esculenta HOM05D004622 ORTHO05D005431 4.6e-13 79.3 247 31.2
CSS0048557 Camellia sinensis var. sinensis HOM05D004622 ORTHO05D005431 6.0e-13 79.0 226 30.5
CsaV3_1G015000 Cucumis sativus L. HOM05D004622 ORTHO05D005431 6.0e-13 79.0 219 31.5
CsaV3_1G015910 Cucumis sativus L. HOM05D004622 ORTHO05D005431 6.0e-13 79.0 219 31.5
DCAR_012203 Daucus carota HOM05D004622 ORTHO05D005431 7.8e-13 78.6 223 33.2
FvH4_3g25120 Fragaria vesca HOM05D004622 ORTHO05D005431 2.3e-12 77.0 214 34.1
GSVIVG01036110001 Vitis vinifera HOM05D004622 ORTHO05D005431 2.3e-12 77.0 135 38.5
FAN11G1623 Fragaria x ananassa HOM05D004622 ORTHO05D005431 3.0e-12 76.6 214 34.1
Ciclev10028879m.g Citrus clementina HOM05D004622 ORTHO05D005431 5.1e-12 75.9 228 32.5
Haze_23364 Corylus avellana HOM05D004622 ORTHO05D005431 5.1e-12 75.9 206 32.5
Rhsim01G0204900 Rhododendron simsii HOM05D004622 ORTHO05D005431 5.1e-12 75.9 190 32.6
DCAR_010339 Daucus carota HOM05D004622 ORTHO05D005431 8.6e-12 75.1 219 29.2
Gohir.A09G096001 Gossypium hirsutum HOM05D004622 ORTHO05D005431 8.6e-12 75.1 201 32.3
Nn2g14192 Nelumbo nucifera HOM05D004622 ORTHO05D005431 8.6e-12 75.1 229 29.3
Oeu035435.1 Olea europaea HOM05D004622 ORTHO05D005431 8.6e-12 75.1 210 30.5
CAN.G1524.7 Capsicum annuum HOM05D004622 ORTHO05D005431 1.1e-11 74.7 60 45.0
MD03G1147600 Malus domestica HOM05D004622 ORTHO05D005431 1.1e-11 74.7 229 30.6
Sopen11g027250 Solanum pennellii HOM05D004622 ORTHO05D005431 1.1e-11 74.7 60 45.0
CiPaw.13G134900 Carya illinoinensis HOM05D004622 ORTHO05D005431 1.9e-11 73.9 223 30.5
MELO3C004685.2 Cucumis melo HOM05D004622 ORTHO05D005431 1.9e-11 73.9 214 30.4
Duzib170G0788 Durio zibethinus HOM05D004622 ORTHO05D005431 3.3e-11 73.2 242 31.4
Glyma.12G090100 Glycine max HOM05D004622 ORTHO05D005431 4.3e-11 72.8 212 28.8
MD11G1166300 Malus domestica HOM05D004622 ORTHO05D005431 4.3e-11 72.8 228 32.0
CiPaw.14G099300 Carya illinoinensis HOM05D004622 ORTHO05D005431 5.6e-11 72.4 210 31.0
Glyma.13G315900 Glycine max HOM05D004622 ORTHO05D005431 5.6e-11 72.4 191 33.0
Prupe.6G132300 Prunus persica HOM05D004622 ORTHO05D005431 5.6e-11 72.4 228 30.7
Sc21g0007040 Simmondsia chinensis HOM05D004622 ORTHO05D005431 5.6e-11 72.4 58 48.3
TWI79G1499 Tripterygium wilfordii HOM05D004622 ORTHO05D005431 5.6e-11 72.4 203 32.5
Gohir.A08G212500 Gossypium hirsutum HOM05D006966 ORTHO05D008111 7.3e-11 72.0 69 46.4
Nitab4.5_0006738g0040 Nicotiana tabacum HOM05D004622 ORTHO05D005431 7.3e-11 72.0 162 32.1
Oeu034007.1 Olea europaea HOM05D004622 ORTHO05D005431 7.3e-11 72.0 258 28.7
Potri.004G201500 Populus trichocarpa HOM05D004622 ORTHO05D005431 9.5e-11 71.6 212 33.0
SalBow6G5234 Salvia bowleyana HOM05D004622 ORTHO05D005431 1.2e-10 71.2 189 30.2
Gohir.D09G095666 Gossypium hirsutum HOM05D004622 ORTHO05D005431 1.6e-10 70.9 201 31.8
CDE12G0371 Ceratophyllum demersum HOM05D004622 ORTHO05D005431 2.1e-10 70.5 226 32.7
RcHm_v2.0_Chr5g0045661 Rosa chinensis HOM05D004622 ORTHO05D005431 2.1e-10 70.5 215 33.5
RcHm_v2.0_Chr5g0046341 Rosa chinensis HOM05D004622 ORTHO05D005431 2.1e-10 70.5 215 33.5
ClCG01G012170 Citrullus lanatus HOM05D004622 ORTHO05D005431 2.8e-10 70.1 194 32.5
Migut.N02485 Erythranthe guttata HOM05D004622 ORTHO05D005431 2.8e-10 70.1 85 38.8
unitig_27.g25015 Utricularia gibba HOM05D004622 ORTHO05D005431 2.8e-10 70.1 61 45.9
MBI17_g08325_MAGBIO Magnolia biondii HOM05D004622 ORTHO05D005431 4.7e-10 69.3 238 30.7
Nitab4.5_0000755g0020 Nicotiana tabacum HOM05D004622 ORTHO05D005431 4.7e-10 69.3 162 31.5
Actinidia07251 Actinidia chinensis HOM05D000892 ORTHO05D005431 6.2e-10 68.9 191 31.4
MSTRG.18765 Avicennia marina HOM05D004622 ORTHO05D005431 6.2e-10 68.9 211 29.9
CANSAT54G2229 Cannabis sativa HOM05D004622 ORTHO05D005431 6.2e-10 68.9 253 30.0
Glyma.12G185600 Glycine max HOM05D004622 ORTHO05D005431 6.2e-10 68.9 191 31.4
PSO384G0540 Papaver somniferum HOM05D004622 ORTHO05D005431 6.2e-10 68.9 79 44.3
Gohir.D08G229500 Gossypium hirsutum HOM05D006966 ORTHO05D008111 1.1e-09 68.2 69 44.9
Gorai.004G243700 Gossypium raimondii HOM05D006966 ORTHO05D008111 1.1e-09 68.2 69 44.9
Nitab4.5_0003661g0010 Nicotiana tabacum HOM05D004622 ORTHO05D005431 1.1e-09 68.2 58 44.8
TWI31G0739 Tripterygium wilfordii HOM05D004622 ORTHO05D005431 1.1e-09 68.2 199 30.2
unitig_0.g1476 Utricularia gibba HOM05D000020 ORTHO05D000543 1.1e-09 68.2 59 47.5
Cc02_g32560 Coffea canephora HOM05D006966 ORTHO05D008111 1.4e-09 67.8 118 32.2
Dinv22834 Davidia involucrata HOM05D000892 ORTHO05D000750 1.8e-09 67.4 201 32.3
Phvul.005G123200 Phaseolus vulgaris HOM05D004622 ORTHO05D005431 1.8e-09 67.4 112 34.8
TWI75G1018 Tripterygium wilfordii HOM05D004622 ORTHO05D005431 1.8e-09 67.4 120 35.0
Sed0001344 Sechium edule HOM05D004622 ORTHO05D005431 2.3e-09 67.0 72 38.9
Sopen06g030720 Solanum pennellii HOM05D004622 ORTHO05D005431 2.3e-09 67.0 154 30.5
unitig_699.g19154 Utricularia gibba HOM05D004622 ORTHO05D005431 2.3e-09 67.0 69 44.9
VMungo1080G1565 Vigna mungo HOM05D004622 ORTHO05D005431 2.3e-09 67.0 112 37.5
ATR0820G124 Amborella trichopoda HOM05D004622 ORTHO05D005431 3.1e-09 66.6 111 39.6
Eucgr.B03842 Eucalyptus grandis HOM05D004622 ORTHO05D005431 3.1e-09 66.6 81 42.0
PSO801G0264 Papaver somniferum HOM05D004622 ORTHO05D005431 4.0e-09 66.2 137 34.3
SGA_v2.0_scaffold177G39416 Striga asiatica HOM05D004622 ORTHO05D005431 4.0e-09 66.2 74 43.2
Lj9P680T20 Lonicera japonica HOM05D006966 ORTHO05D008111 5.2e-09 65.9 114 35.1
PGSC0003DMG400005882 Solanum tuberosum HOM05D004622 ORTHO05D005431 5.2e-09 65.9 154 30.5
Atru.chr3.3214 Acer truncatum HOM05D004622 ORTHO05D005431 6.8e-09 65.5 117 36.8
CSS0005342 Camellia sinensis var. sinensis HOM05D006966 ORTHO05D008111 6.8e-09 65.5 126 38.1
Actinidia35466 Actinidia chinensis HOM05D004622 ORTHO05D005431 8.9e-09 65.1 111 32.4
Lj3g0000197 Lotus japonicus HOM05D004622 ORTHO05D005431 1.2e-08 64.7 117 32.5
PGR102G1757 Punica granatum HOM05D004622 ORTHO05D005431 1.2e-08 64.7 220 30.0
Solyc06g074270.1 Solanum lycopersicum HOM05D004622 ORTHO05D005431 1.2e-08 64.7 154 30.5
PGSC0003DMG400026354 Solanum tuberosum HOM05D004622 ORTHO05D005431 1.2e-08 64.7 249 28.5
Aqoxy4G02755 Aquilegia oxysepala HOM05D004622 ORTHO05D005431 1.5e-08 64.3 206 32.0
Duzib177G0559 Durio zibethinus HOM05D006966 ORTHO05D008111 1.5e-08 64.3 63 44.4
RcHm_v2.0_Chr3g0453941 Rosa chinensis HOM05D006966 ORTHO05D008111 1.5e-08 64.3 160 28.8
VMungo0720G1138 Vigna mungo HOM05D006966 ORTHO05D008111 1.5e-08 64.3 121 35.5
CSS0008116 Camellia sinensis var. sinensis HOM05D006966 ORTHO05D008111 2.0e-08 63.9 117 37.6
MELO3C014501.2 Cucumis melo HOM05D004622 ORTHO05D005431 2.0e-08 63.9 117 36.8
Peaxi162Scf00040g00012 Petunia axillaris HOM05D004622 ORTHO05D005431 2.0e-08 63.9 223 27.4
CsaV3_6G038370 Cucumis sativus L. HOM05D004622 ORTHO05D005431 2.6e-08 63.5 134 35.1
Lalb_Chr03g0028141 Lupinus albus HOM05D004622 ORTHO05D005431 2.6e-08 63.5 221 31.2
SEGI_39458 Sequoiadendron giganteum HOM05D004622 ORTHO05D005431 2.6e-08 63.5 113 34.5
MSTRG.21036 Avicennia marina HOM05D004622 ORTHO05D005431 4.4e-08 62.8 244 30.3
CSS0039489 Camellia sinensis var. sinensis HOM05D004622 ORTHO05D005431 4.4e-08 62.8 197 29.4
Lj3g0018609 Lotus japonicus HOM05D004622 ORTHO05D005431 4.4e-08 62.8 218 31.7
Sc16g0008300 Simmondsia chinensis HOM05D006966 ORTHO05D008111 5.8e-08 62.4 74 41.9
VMungo0540G1150 Vigna mungo HOM05D006966 ORTHO05D008111 5.8e-08 62.4 63 42.9
Ciclev10002008m.g Citrus clementina HOM05D006966 ORTHO05D008111 7.6e-08 62.0 68 41.2
FAN09G4667 Fragaria x ananassa HOM05D006966 ORTHO05D008111 7.6e-08 62.0 151 28.5
Glyma.11G182500 Glycine max HOM05D004622 ORTHO05D005431 7.6e-08 62.0 125 33.6
Lalb_Chr06g0167831 Lupinus albus HOM05D006966 ORTHO05D008111 7.6e-08 62.0 54 44.4
FAN02G1750 Fragaria x ananassa HOM05D006966 ORTHO05D008111 9.9e-08 61.6 98 35.7
HanXRQChr11g0324161 Helianthus annuus HOM05D004622 ORTHO05D005431 9.9e-08 61.6 123 31.7
Phvul.006G095100 Phaseolus vulgaris HOM05D006966 ORTHO05D008111 9.9e-08 61.6 60 45.0
QL01p012122 Quercus lobata HOM05D004622 ORTHO05D005431 9.9e-08 61.6 203 28.1
HPP92_003213 Vanilla planifolia HOM05D004622 ORTHO05D005431 9.9e-08 61.6 65 38.5
Peaxi162Scf00434g00052 Petunia axillaris HOM05D006966 ORTHO05D008111 1.3e-07 61.2 63 41.3
Potri.005G037600 Populus trichocarpa HOM05D006966 ORTHO05D008111 1.3e-07 61.2 124 35.5
EL10Ac4g09297 Beta vulgaris HOM05D036395 ORTHO05D008111 1.7e-07 60.8 57 45.6
Cpa.g.sc195.5 Carica papaya HOM05D004622 ORTHO05D005431 1.7e-07 60.8 212 27.4
ClCG02G022240 Citrullus lanatus HOM05D004622 ORTHO05D005431 1.7e-07 60.8 158 31.0
Dinv22908 Davidia involucrata HOM05D006966 ORTHO05D008111 1.7e-07 60.8 116 30.2
SGA_v2.0_scaffold295G47519 Striga asiatica HOM05D004622 ORTHO05D005431 1.7e-07 60.8 78 39.7
Actinidia19807 Actinidia chinensis HOM05D001271 ORTHO05D008111 2.9e-07 60.1 63 46.0
ATR0580G269 Amborella trichopoda HOM05D006966 ORTHO05D008111 2.9e-07 60.1 157 29.3
Lj7P485T19 Lonicera japonica HOM05D006966 ORTHO05D008111 2.9e-07 60.1 115 33.9
Nitab4.5_0001216g0120 Nicotiana tabacum HOM05D004622 ORTHO05D005431 2.9e-07 60.1 156 29.5
Potri.013G027100 Populus trichocarpa HOM05D006966 ORTHO05D008111 2.9e-07 60.1 112 32.1
Sed0007833 Sechium edule HOM05D006966 ORTHO05D008111 2.9e-07 60.1 68 38.2
Solyc11g068530.1 Solanum lycopersicum HOM05D004622 ORTHO05D005431 2.9e-07 60.1 244 27.0
HPP92_004124 Vanilla planifolia HOM05D001105 ORTHO05D003643 2.9e-07 60.1 68 42.6
Zm00001eb054430 Zea mays HOM05D001105 ORTHO05D003643 2.9e-07 60.1 75 40.0
Dinv40245 Davidia involucrata HOM05D000556 ORTHO05D008111 3.7e-07 59.7 68 38.2
FAN14G0100 Fragaria x ananassa HOM05D006966 ORTHO05D008111 3.7e-07 59.7 152 30.9
FAN14G4059 Fragaria x ananassa HOM05D006966 ORTHO05D008111 3.7e-07 59.7 152 30.9
Hma1.2p1_0666F.1_g199360 Hydrangea macrophylla HOM05D006966 ORTHO05D008111 3.7e-07 59.7 55 43.6
Lsat_1_v5_gn_6_38921 Lactuca sativa HOM05D000892 ORTHO05D000750 4.9e-07 59.3 65 40.0
CANSAT54G0218 Cannabis sativa HOM05D006966 ORTHO05D008111 6.4e-07 58.9 60 40.0
CDE04G1878 Ceratophyllum demersum HOM05D004622 ORTHO05D005431 6.4e-07 58.9 257 28.0
Glyma.19G238400 Glycine max HOM05D006966 ORTHO05D008111 6.4e-07 58.9 114 35.1
Sabra05G0038600 Salix brachista HOM05D006966 ORTHO05D008111 6.4e-07 58.9 114 35.1
Zm00001eb216640 Zea mays HOM05D001105 ORTHO05D003643 6.4e-07 58.9 76 40.8
Atru.chr2.499 Acer truncatum HOM05D006966 ORTHO05D008111 8.3e-07 58.5 119 31.9
Cpa.g.sc195.4 Carica papaya HOM05D004622 ORTHO05D005431 8.3e-07 58.5 210 28.1
DCAR_006166 Daucus carota HOM05D004622 ORTHO05D005431 8.3e-07 58.5 67 38.8
FAN05G0025 Fragaria x ananassa HOM05D006966 ORTHO05D008111 8.3e-07 58.5 153 30.7
FAN05G1324 Fragaria x ananassa HOM05D006966 ORTHO05D008111 8.3e-07 58.5 153 30.7
FAN05G1352 Fragaria x ananassa HOM05D006966 ORTHO05D008111 8.3e-07 58.5 153 30.7
Medtr1g082320 Medicago truncatula HOM05D006966 ORTHO05D008111 8.3e-07 58.5 60 45.0
CAN.G1134.3 Capsicum annuum HOM05D006966 ORTHO05D008111 1.1e-06 58.2 127 29.1
Ca_01655_v3 Cicer arietinum L. HOM05D004622 ORTHO05D005431 1.1e-06 58.2 232 27.6
FvH4_6g05230 Fragaria vesca HOM05D006966 ORTHO05D008111 1.1e-06 58.2 152 30.9
Nn3g21196 Nelumbo nucifera HOM05D006966 ORTHO05D008111 1.1e-06 58.2 117 33.3
Os03g0705800 Oryza sativa ssp. japonica HOM05D001105 ORTHO05D003643 1.1e-06 58.2 79 38.0
SalBow3G2592 Salvia bowleyana HOM05D004622 ORTHO05D005431 1.1e-06 58.2 68 36.8
TAR633G0886 Trochodendron aralioides HOM05D006966 ORTHO05D008111 1.1e-06 58.2 121 32.2
TAR633G0983 Trochodendron aralioides HOM05D004622 ORTHO05D005431 1.1e-06 58.2 273 24.2
arahy.Tifrunner.gnm1.ann1.3A5YKQ Arachis hypogaea HOM05D006966 ORTHO05D008111 1.4e-06 57.8 128 28.9
Dinv11270 Davidia involucrata HOM05D006966 ORTHO05D017198 1.4e-06 57.8 76 35.5
Lj5g0008249 Lotus japonicus HOM05D006966 ORTHO05D008111 1.4e-06 57.8 58 43.1
Solyc01g098570.2 Solanum lycopersicum HOM05D006966 ORTHO05D008111 1.4e-06 57.8 127 30.7
CsaV3_2G004840 Cucumis sativus L. HOM05D006966 ORTHO05D008111 1.9e-06 57.4 129 33.3
PSO339G0545 Papaver somniferum HOM05D004622 ORTHO05D005431 1.9e-06 57.4 171 29.2
MBI19_g33142_MAGBIO Magnolia biondii HOM05D006966 ORTHO05D008111 2.4e-06 57.0 116 31.9
Medtr2g086590 Medicago truncatula HOM05D004622 ORTHO05D005431 2.4e-06 57.0 259 27.8
Thecc.05G299500 Theobroma cacao HOM05D006966 ORTHO05D008111 2.4e-06 57.0 57 42.1
TPR.G33165 Trifolium pratense HOM05D006966 ORTHO05D008111 2.4e-06 57.0 114 33.3
TPR.G4535 Trifolium pratense HOM05D004622 ORTHO05D005431 2.4e-06 57.0 180 31.1
Zm00001eb092610 Zea mays HOM05D004622 ORTHO05D005431 2.4e-06 57.0 238 28.6
Ca_09380_v3 Cicer arietinum L. HOM05D006966 ORTHO05D008111 3.2e-06 56.6 116 34.5
ClCG02G016130 Citrullus lanatus HOM05D006966 ORTHO05D008111 3.2e-06 56.6 187 28.9
Duzib128G0678 Durio zibethinus HOM05D006966 ORTHO05D008111 3.2e-06 56.6 122 31.1
Dinv33540 Davidia involucrata HOM05D001105 ORTHO05D003643 4.1e-06 56.2 65 43.1
Glyma.03G240900 Glycine max HOM05D006966 ORTHO05D008111 5.4e-06 55.8 108 36.1
Medtr7g113950 Medicago truncatula HOM05D006966 ORTHO05D008111 5.4e-06 55.8 118 30.5
Psat3g009600 Pisum sativum HOM05D006966 ORTHO05D008111 5.4e-06 55.8 120 32.5
TAR636G2506 Trochodendron aralioides HOM05D001105 ORTHO05D003643 5.4e-06 55.8 55 45.5
AL1G65140 Arabidopsis lyrata HOM05D006966 ORTHO05D008111 7.1e-06 55.5 162 32.1
COL.COLO4_09100 Corchorus olitorius HOM05D001105 ORTHO05D001870 7.1e-06 55.5 109 34.9
MELO3C004314.2 Cucumis melo HOM05D006966 ORTHO05D008111 7.1e-06 55.5 151 30.5
MD04G1210600 Malus domestica HOM05D006966 ORTHO05D008111 7.1e-06 55.5 129 32.6
Medtr4g052880 Medicago truncatula HOM05D004622 ORTHO05D005431 7.1e-06 55.5 208 30.3
Rhsim05G0145100 Rhododendron simsii HOM05D006966 ORTHO05D008111 7.1e-06 55.5 120 30.0


User provided reference genes

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