Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy4G02622 Aquilegia oxysepala HOM05D002737 ORTHO05D005828 2.4e-157 558.9 306 100.0
Dinv17085 Davidia involucrata HOM05D002737 ORTHO05D005828 1.9e-74 283.5 303 55.4
Actinidia07271 Actinidia chinensis HOM05D002737 ORTHO05D005828 3.3e-74 282.7 302 55.0
CSS0011545 Camellia sinensis var. sinensis HOM05D002737 ORTHO05D005828 1.3e-70 270.8 303 53.5
TAR268G0004 Trochodendron aralioides HOM05D002737 ORTHO05D005828 1.4e-69 267.3 301 55.1
SGA_v2.0_scaffold7G03980 Striga asiatica HOM05D002737 ORTHO05D005828 9.3e-69 264.6 308 52.3
CSS0011939 Camellia sinensis var. sinensis HOM05D002737 ORTHO05D005828 1.2e-68 264.2 303 52.8
Hma1.2p1_0793F.1_g218640 Hydrangea macrophylla HOM05D002737 ORTHO05D005828 2.1e-68 263.5 303 53.1
SGA_v2.0_scaffold114G31961 Striga asiatica HOM05D002737 ORTHO05D005828 5.1e-67 258.8 315 50.2
MSTRG.21020 Avicennia marina HOM05D002737 ORTHO05D005828 6.7e-67 258.5 320 48.8
Manes.01G182101 Manihot esculenta HOM05D002737 ORTHO05D005828 8.7e-67 258.1 311 49.5
RcHm_v2.0_Chr2g0115601 Rosa chinensis HOM05D002737 ORTHO05D005828 9.6e-66 254.6 317 49.5
ClCG01G011660 Citrullus lanatus HOM05D002737 ORTHO05D005828 1.3e-65 254.2 326 48.5
Lsat_1_v5_gn_5_176321 Lactuca sativa HOM05D002737 ORTHO05D005828 2.8e-65 253.1 306 50.3
Cc01_g08470 Coffea canephora HOM05D002737 ORTHO05D005828 3.7e-65 252.7 311 50.8
MELO3C003924.2 Cucumis melo HOM05D002737 ORTHO05D005828 8.2e-65 251.5 317 49.2
vmacro06935 Vaccinium macrocarpon HOM05D002737 ORTHO05D005828 1.1e-64 251.1 301 53.5
Sopen11g027560 Solanum pennellii HOM05D002737 ORTHO05D005828 1.4e-64 250.8 315 49.8
ECA248G3131 Erigeron canadensis HOM05D002737 ORTHO05D005828 1.8e-64 250.4 312 51.6
PGSC0003DMG400019621 Solanum tuberosum HOM05D002737 ORTHO05D005828 4.0e-64 249.2 315 49.5
Nn6g34744 Nelumbo nucifera HOM05D002737 ORTHO05D005828 5.3e-64 248.8 301 51.8
PSO063G0569 Papaver somniferum HOM05D002737 ORTHO05D005828 6.9e-64 248.4 300 50.3
Nitab4.5_0000893g0040 Nicotiana tabacum HOM05D002737 ORTHO05D005828 1.2e-63 247.7 322 49.1
Duzib150G0779 Durio zibethinus HOM05D002737 ORTHO05D005828 1.5e-63 247.3 310 50.0
Nitab4.5_0001135g0150 Nicotiana tabacum HOM05D002737 ORTHO05D005828 1.5e-63 247.3 321 48.3
Migut.D02412 Erythranthe guttata HOM05D002737 ORTHO05D005828 2.6e-63 246.5 314 49.0
CAN.G745.41 Capsicum annuum HOM05D002737 ORTHO05D005828 4.5e-63 245.7 312 49.4
Solyc11g068870.2 Solanum lycopersicum HOM05D002737 ORTHO05D005828 4.5e-63 245.7 315 49.2
vmacro03959 Vaccinium macrocarpon HOM05D002737 ORTHO05D005828 5.8e-63 245.4 301 52.8
CsaV3_2G009130 Cucumis sativus L. HOM05D002737 ORTHO05D005828 1.0e-62 244.6 324 47.5
Rhsim13G0195300 Rhododendron simsii HOM05D002737 ORTHO05D005828 1.0e-62 244.6 316 49.4
FAN23G1354 Fragaria x ananassa HOM05D002737 ORTHO05D005828 1.3e-62 244.2 316 48.1
Medtr5g095010 Medicago truncatula HOM05D002737 ORTHO05D005828 1.3e-62 244.2 322 48.8
FvH4_1g21730 Fragaria vesca HOM05D002737 ORTHO05D005828 2.2e-62 243.4 316 47.8
Lj7A589T65 Lonicera japonica HOM05D002737 ORTHO05D005828 2.2e-62 243.4 304 49.0
FAN19G0045 Fragaria x ananassa HOM05D002737 ORTHO05D005828 2.9e-62 243.0 316 47.8
CDE06G1256 Ceratophyllum demersum HOM05D002737 ORTHO05D005828 4.9e-62 242.3 306 50.0
Sc12g0004790 Simmondsia chinensis HOM05D002737 ORTHO05D005828 6.5e-62 241.9 305 51.5
CiPaw.14G096400 Carya illinoinensis HOM05D002737 ORTHO05D005828 1.1e-61 241.1 316 50.3
Prupe.6G178500 Prunus persica HOM05D002737 ORTHO05D005828 1.4e-61 240.7 333 44.1
Sed0023461 Sechium edule HOM05D002737 ORTHO05D005828 1.4e-61 240.7 330 46.7
Haze_23327 Corylus avellana HOM05D002737 ORTHO05D005828 2.5e-61 240.0 316 48.4
Psat2g008640 Pisum sativum HOM05D002737 ORTHO05D005828 3.2e-61 239.6 320 46.9
EL10Ac7g17115 Beta vulgaris HOM05D002737 ORTHO05D005828 4.2e-61 239.2 317 48.9
Ca_06383_v3 Cicer arietinum L. HOM05D001458 ORTHO05D007170 4.2e-61 239.2 320 46.9
Ca_29964_v3 Cicer arietinum L. HOM05D001458 ORTHO05D007170 4.2e-61 239.2 320 46.9
Glyma.10G288000 Glycine max HOM05D002737 ORTHO05D005828 5.5e-61 238.8 319 46.7
Haze_00729 Corylus avellana HOM05D002737 ORTHO05D005828 2.7e-60 236.5 318 48.1
Glyma.20G101200 Glycine max HOM05D002737 ORTHO05D005828 3.5e-60 236.1 320 46.6
TWI77G0520 Tripterygium wilfordii HOM05D002737 ORTHO05D005828 3.5e-60 236.1 311 47.3
Haze_00725 Corylus avellana HOM05D002737 ORTHO05D005828 6.1e-60 235.3 318 48.4
FAN26G0444 Fragaria x ananassa HOM05D002737 ORTHO05D005828 1.8e-59 233.8 316 46.2
unitig_88.g27805 Utricularia gibba HOM05D002737 ORTHO05D002121 3.9e-59 232.6 301 49.2
CANSAT64G0180 Cannabis sativa HOM05D002737 ORTHO05D005828 6.7e-59 231.9 311 47.3
TWI79G0303 Tripterygium wilfordii HOM05D002737 ORTHO05D005828 6.7e-59 231.9 311 46.6
Lalb_Chr02g0143691 Lupinus albus HOM05D002737 ORTHO05D005828 1.1e-58 231.1 319 46.7
Gohir.A07G112300 Gossypium hirsutum HOM05D002737 ORTHO05D005828 1.9e-58 230.3 307 48.2
Potri.009G162500 Populus trichocarpa HOM05D002737 ORTHO05D005828 1.9e-58 230.3 315 47.9
Ah.10g032410 Amaranthus hybridus HOM05D002737 ORTHO05D005828 2.5e-58 229.9 354 43.5
Gohir.D07G115800 Gossypium hirsutum HOM05D002737 ORTHO05D005828 2.5e-58 229.9 310 48.1
Oeu049293.2 Olea europaea HOM05D002737 ORTHO05D005828 2.5e-58 229.9 349 43.6
DCAR_003399 Daucus carota HOM05D002737 ORTHO05D005828 5.7e-58 228.8 308 46.8
Sabra15G0046000 Salix brachista HOM05D002737 ORTHO05D005828 7.4e-58 228.4 314 46.2
Sabra15G0048200 Salix brachista HOM05D002737 ORTHO05D005828 7.4e-58 228.4 314 46.2
VMungo0720G0453 Vigna mungo HOM05D002737 ORTHO05D005828 9.7e-58 228.0 303 47.9
Eucgr.J00541 Eucalyptus grandis HOM05D002737 ORTHO05D005828 1.3e-57 227.6 290 48.6
PGR119G1771 Punica granatum HOM05D002737 ORTHO05D005828 1.3e-57 227.6 325 45.5
AT2G27285 Arabidopsis thaliana HOM05D002737 ORTHO05D005828 4.8e-57 225.7 324 45.1
arahy.Tifrunner.gnm1.ann1.AGV1MP Arachis hypogaea HOM05D002737 ORTHO05D005828 4.8e-57 225.7 313 47.0
Lj5g0022679 Lotus japonicus HOM05D002737 ORTHO05D005828 4.8e-57 225.7 324 46.9
Aa31LG5G8680 Aethionema arabicum HOM05D002737 ORTHO05D005828 1.1e-56 224.6 320 45.0
ATR0807G231 Amborella trichopoda HOM05D002737 ORTHO05D005828 1.1e-56 224.6 318 47.2
arahy.Tifrunner.gnm1.ann1.4SNC56 Arachis hypogaea HOM05D002737 ORTHO05D005828 1.8e-56 223.8 313 47.6
GSVIVG01036054001 Vitis vinifera HOM05D002737 ORTHO05D005828 5.3e-56 222.2 209 60.3
Thecc.09G275600 Theobroma cacao HOM05D002737 ORTHO05D005828 6.9e-56 221.9 310 47.7
Duzib168G0210 Durio zibethinus HOM05D002737 ORTHO05D005828 9.0e-56 221.5 309 45.3
Gorai.001G124100 Gossypium raimondii HOM05D002737 ORTHO05D005828 1.2e-55 221.1 311 47.6
Peaxi162Scf00010g03312 Petunia axillaris HOM05D002737 ORTHO05D005828 1.2e-55 221.1 255 54.5
Sabra15G0059900 Salix brachista HOM05D002737 ORTHO05D005828 1.2e-55 221.1 321 45.2
Hund18792 Selenicereus undatus HOM05D002737 ORTHO05D005828 1.2e-55 221.1 207 58.5
Peaxi162Scf01010g00216 Petunia axillaris HOM05D002737 ORTHO05D005828 1.5e-55 220.7 255 54.1
AL4G21200 Arabidopsis lyrata HOM05D002737 ORTHO05D005828 3.4e-55 219.5 330 43.9
CDE08G0429 Ceratophyllum demersum HOM05D002737 ORTHO05D003752 1.7e-54 217.2 204 58.3
Lj5g0011855 Lotus japonicus HOM05D002737 ORTHO05D005828 1.7e-54 217.2 321 46.1
Sp4g10090 Schrenkiella parvula HOM05D002737 ORTHO05D005828 2.2e-54 216.9 310 44.2
THA.LOC104826443 Tarenaya hassleriana HOM05D002737 ORTHO05D005828 5.5e-53 212.2 319 43.3
MD15G1329700 Malus domestica HOM05D002737 ORTHO05D005828 1.6e-52 210.7 335 41.8
BcaB06g28137 Brassica carinata HOM05D002737 ORTHO05D005828 6.1e-52 208.8 307 43.6
MBI01_g04520_MAGBIO Magnolia biondii HOM05D002737 ORTHO05D005828 7.9e-52 208.4 261 49.4
COL.COLO4_22657 Corchorus olitorius HOM05D002737 ORTHO05D005828 3.0e-51 206.5 309 44.7
Carub.0004s0789 Capsella rubella HOM05D002737 ORTHO05D005828 3.9e-51 206.1 326 42.6
Ciclev10028821m.g Citrus clementina HOM05D002737 ORTHO05D005828 5.1e-51 205.7 328 41.8
QL07p000712 Quercus lobata HOM05D002737 ORTHO05D005828 6.7e-51 205.3 284 46.5
Phvul.007G013400 Phaseolus vulgaris HOM05D002737 ORTHO05D005828 3.3e-50 203.0 320 43.1
Peaxi162Scf00010g03410 Petunia axillaris HOM05D002737 ORTHO05D005828 4.3e-50 202.6 254 50.0
AL4G21190 Arabidopsis lyrata HOM05D002737 ORTHO05D005828 1.3e-49 201.1 302 42.4
Peaxi162Scf01324g00241 Petunia axillaris HOM05D002737 ORTHO05D005828 2.8e-49 199.9 272 48.2
Carub.0004s0788 Capsella rubella HOM05D002737 ORTHO05D005828 3.7e-49 199.5 310 42.6
AT2G27280 Arabidopsis thaliana HOM05D002737 ORTHO05D005828 4.8e-49 199.1 301 41.2
TPR.G14160 Trifolium pratense HOM05D002737 ORTHO05D005828 8.2e-49 198.4 325 42.5
Sabra09G0126900 Salix brachista HOM05D002737 ORTHO05D005828 2.4e-48 196.8 259 47.1
CARHR119810 Cardamine hirsuta HOM05D002737 ORTHO05D005828 6.9e-48 195.3 320 41.2
Thhalv10002052m.g Eutrema salsugineum HOM05D002737 ORTHO05D005828 2.6e-47 193.4 310 42.9
AagrBONN_evm.TU.Sc2ySwM_368.3225 Anthoceros agrestis HOM05D002737 ORTHO05D005828 2.9e-46 189.9 195 56.9
BcaC02g08257 Brassica carinata HOM05D002737 ORTHO05D005828 1.4e-45 187.6 196 52.6
A04p20820 Brassica napus HOM05D002737 ORTHO05D005828 1.4e-45 187.6 208 50.5
C04p56640 Brassica napus HOM05D002737 ORTHO05D005828 1.4e-45 187.6 196 52.6
BraA04t17655Z Brassica rapa HOM05D002737 ORTHO05D005828 1.4e-45 187.6 208 50.5
Pp3c10_11700 Physcomitrium patens HOM05D002737 ORTHO05D005828 7.2e-45 185.3 339 41.6
HPP92_021234 Vanilla planifolia HOM05D002737 ORTHO05D005828 1.0e-43 181.4 316 40.2
Mapoly0024s0122 Marchantia polymorpha HOM05D002737 ORTHO05D005828 2.3e-43 180.3 335 38.8
AL1G53070 Arabidopsis lyrata HOM05D002737 ORTHO05D005828 2.6e-42 176.8 206 50.5
BolC4t27191H Brassica oleracea HOM05D002737 ORTHO05D005828 2.6e-42 176.8 314 39.5
Zm00001eb422940 Zea mays HOM05D002737 ORTHO05D005828 2.8e-41 173.3 249 46.6
Sabra15G0053400 Salix brachista HOM05D002737 ORTHO05D005828 5.9e-39 165.6 314 38.9
Atru.chr3.3139 Acer truncatum HOM05D002737 ORTHO05D005828 7.7e-39 165.2 208 49.5
CiPaw.13G131400 Carya illinoinensis HOM05D002737 ORTHO05D005828 1.0e-38 164.9 237 47.7
SEGI_17121 Sequoiadendron giganteum HOM05D002737 ORTHO05D005828 2.2e-38 163.7 175 54.3
Os04g0440000 Oryza sativa ssp. japonica HOM05D002737 ORTHO05D005828 2.5e-37 160.2 262 45.4
AT1G55928 Arabidopsis thaliana HOM05D002737 ORTHO05D005828 3.6e-36 156.4 281 40.6
Sabra15G0053700 Salix brachista HOM05D002737 ORTHO05D005828 6.7e-35 152.1 244 41.4
Actinidia24241 Actinidia chinensis HOM05D002737 ORTHO05D005828 9.7e-34 148.3 180 48.9
QL07p000775 Quercus lobata HOM05D002737 ORTHO05D005828 1.3e-33 147.9 248 39.9
HanXRQChr03g0065531 Helianthus annuus HOM05D002737 ORTHO05D005828 2.2e-33 147.1 224 44.2
CBR_g45752 Chara braunii HOM05D002737 ORTHO05D005828 8.2e-33 145.2 170 50.0
CBR_g6328 Chara braunii HOM05D002737 ORTHO05D005828 9.1e-32 141.7 173 49.1
Cre17.g734000 Chlamydomonas reinhardtii HOM05D002737 ORTHO05D005828 2.2e-30 137.1 163 44.8
MCO06G117 Micromonas commoda HOM05D002737 ORTHO05D005828 6.5e-30 135.6 220 40.9
AUR62037790 Chenopodium quinoa HOM05D002737 ORTHO05D005828 1.1e-29 134.8 219 43.8
AUR62018224 Chenopodium quinoa HOM05D002737 ORTHO05D005828 4.2e-29 132.9 209 44.5
Migut.D02413 Erythranthe guttata HOM05D002737 ORTHO05D005828 8.0e-28 128.6 206 45.1
QL07p000693 Quercus lobata HOM05D002737 ORTHO05D009499 1.4e-27 127.9 141 51.8
CARHR119800 Cardamine hirsuta HOM05D002737 ORTHO05D005828 2.6e-26 123.6 172 44.8
Migut.D02400 Erythranthe guttata HOM05D002737 ORTHO05D005828 2.6e-26 123.6 314 33.8
Potri.004G201300 Populus trichocarpa HOM05D002737 ORTHO05D005828 3.5e-23 113.2 303 34.3
Gohir.D05G081600 Gossypium hirsutum HOM05D002737 ORTHO05D005828 2.2e-22 110.5 257 35.8
FAN28G1974 Fragaria x ananassa HOM05D002737 ORTHO05D005828 1.5e-21 107.8 110 53.6
Actinidia24240 Actinidia chinensis HOM05D002737 ORTHO05D005828 9.4e-21 105.1 101 58.4
Lalb_Chr06g0164021 Lupinus albus HOM05D002737 ORTHO05D005828 9.4e-21 105.1 111 55.9
MD01G1023000 Malus domestica HOM05D002737 ORTHO05D005828 1.4e-16 91.3 101 50.5
SHI06201 Sapria himalayana HOM05D002737 ORTHO05D005828 3.5e-15 86.7 108 47.2
Oeu025863.1 Olea europaea HOM05D002737 ORTHO05D005828 2.3e-14 84.0 84 60.7
AagrBONN_evm.TU.Sc2ySwM_368.3239 Anthoceros agrestis HOM05D002737 ORTHO05D005828 5.5e-13 79.3 71 60.6
arahy.Tifrunner.gnm1.ann1.0K86JE Arachis hypogaea HOM05D002737 ORTHO05D005828 8.0e-12 75.5 312 33.0
arahy.Tifrunner.gnm1.ann1.G9FM3T Arachis hypogaea HOM05D002737 ORTHO05D005828 1.8e-11 74.3 117 42.7
CSS0037550 Camellia sinensis var. sinensis HOM05D002737 ORTHO05D005828 1.2e-10 71.6 100 45.0
arahy.Tifrunner.gnm1.ann1.K04YXN Arachis hypogaea HOM05D002737 ORTHO05D023756 1.5e-10 71.2 98 48.0
QL07p000753 Quercus lobata HOM05D002737 ORTHO05D005828 4.1e-08 63.2 102 41.2
CARHR119790 Cardamine hirsuta HOM05D002737 ORTHO05D005828 1.6e-07 61.2 201 29.4
AagrBONN_evm.TU.Sc2ySwM_368.3190 Anthoceros agrestis HOM05D000001 ORTHO05D072262 2.7e-07 60.5 59 55.9
Rhsim13G0195400 Rhododendron simsii HOM05D002737 ORTHO05D005828 2.7e-07 60.5 130 39.2
Cpa.g.sc23.121 Carica papaya HOM05D002737 ORTHO05D005828 5.9e-07 59.3 141 36.2


User provided reference genes

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