Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy4G02603 Aquilegia oxysepala HOM05D004604 ORTHO05D005744 0.0e+00 1197.2 609 100.0
TAR623G0226 Trochodendron aralioides HOM05D004604 ORTHO05D005744 1.1e-225 786.9 649 64.3
PSO339G2357 Papaver somniferum HOM05D004604 ORTHO05D005744 1.8e-209 733.0 646 59.3
CSS0014761 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 5.4e-209 731.5 639 61.0
PSO384G4393 Papaver somniferum HOM05D004604 ORTHO05D005744 5.9e-208 728.0 634 59.8
Manes.10G013900 Manihot esculenta HOM05D004604 ORTHO05D005744 1.4e-204 716.8 634 58.8
Nn2g11459 Nelumbo nucifera HOM05D004604 ORTHO05D005744 1.2e-203 713.8 642 58.6
Thecc.10G020600 Theobroma cacao HOM05D004604 ORTHO05D005744 1.0e-199 700.7 637 58.7
Cfa001330 Carpinus fangiana HOM05D004604 ORTHO05D005744 2.3e-199 699.5 635 57.8
Sabra10G0146600 Salix brachista HOM05D004604 ORTHO05D005744 3.0e-196 689.1 638 58.0
Gohir.A10G235000 Gossypium hirsutum HOM05D004604 ORTHO05D005744 6.8e-196 688.0 639 57.4
CSS0028164 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 1.2e-195 687.2 639 58.1
TWI09G1217 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 1.5e-195 686.8 635 57.3
Rhsim03G0142100 Rhododendron simsii HOM05D004604 ORTHO05D005744 3.4e-195 685.6 625 58.1
Gorai.011G285800 Gossypium raimondii HOM05D004604 ORTHO05D005744 2.9e-194 682.6 643 56.8
Lj1C953T18 Lonicera japonica HOM05D004604 ORTHO05D005744 3.7e-194 682.2 640 57.8
TWI73G0703 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 1.2e-192 677.2 677 54.1
TAR369G0014 Trochodendron aralioides HOM05D004604 ORTHO05D005744 1.6e-192 676.8 586 60.8
Ciclev10030943m.g Citrus clementina HOM05D004604 ORTHO05D005744 7.3e-190 667.9 634 56.2
MD01G1132500 Malus domestica HOM05D004604 ORTHO05D005744 1.2e-189 667.2 644 55.6
Prupe.2G248700 Prunus persica HOM05D004604 ORTHO05D005744 2.1e-189 666.4 645 56.1
MD07G1220300 Malus domestica HOM05D004604 ORTHO05D005744 8.0e-189 664.5 641 57.1
Potri.010G190100 Populus trichocarpa HOM05D004604 ORTHO05D005744 4.0e-188 662.1 646 55.9
CiPaw.02G191600 Carya illinoinensis HOM05D004604 ORTHO05D005744 5.2e-188 661.8 638 55.5
Glyma.18G028600 Glycine max HOM05D004604 ORTHO05D005744 8.3e-186 654.4 629 56.4
RcHm_v2.0_Chr1g0369991 Rosa chinensis HOM05D004604 ORTHO05D005744 1.1e-185 654.1 615 54.6
Atru.chr12.19 Acer truncatum HOM05D004604 ORTHO05D005744 2.4e-185 652.9 641 55.1
Duzib114G0112 Durio zibethinus HOM05D004604 ORTHO05D005744 4.1e-185 652.1 633 56.4
Lj6g0016498 Lotus japonicus HOM05D004604 ORTHO05D005744 4.1e-185 652.1 642 55.3
Cpa.g.sc19.189 Carica papaya HOM05D004604 ORTHO05D005744 2.0e-184 649.8 639 54.8
Glyma.11G228500 Glycine max HOM05D004604 ORTHO05D005744 6.6e-183 644.8 635 55.6
ECA238G1235 Erigeron canadensis HOM05D004604 ORTHO05D005744 1.1e-182 644.0 612 55.9
GSVIVG01032843001 Vitis vinifera HOM05D004604 ORTHO05D005744 2.5e-182 642.9 613 57.3
CANSAT35G0855 Cannabis sativa HOM05D004604 ORTHO05D005744 3.3e-182 642.5 626 53.8
ClCG11G006230 Citrullus lanatus HOM05D004604 ORTHO05D005744 3.3e-182 642.5 637 53.5
PGR044G2346 Punica granatum HOM05D004604 ORTHO05D005744 5.6e-182 641.7 655 53.7
Hund13846 Selenicereus undatus HOM05D004604 ORTHO05D005744 7.3e-182 641.3 637 54.8
Cc02_g06650 Coffea canephora HOM05D004604 ORTHO05D005744 1.6e-181 640.2 640 53.6
FvH4_7g24330 Fragaria vesca HOM05D004604 ORTHO05D005744 2.1e-181 639.8 636 54.6
Phvul.001G241900 Phaseolus vulgaris HOM05D004604 ORTHO05D005744 3.6e-181 639.0 633 55.0
FAN10G0865 Fragaria x ananassa HOM05D004604 ORTHO05D005744 4.0e-180 635.6 636 53.6
Ca_15268_v3 Cicer arietinum L. HOM05D004604 ORTHO05D005744 6.8e-180 634.8 649 53.6
Medtr3g070310 Medicago truncatula HOM05D004604 ORTHO05D005744 6.8e-180 634.8 649 53.9
Dinv34395 Davidia involucrata HOM05D004604 ORTHO05D005744 2.0e-179 633.3 575 59.1
Lalb_Chr18g0052631 Lupinus albus HOM05D004604 ORTHO05D005744 2.0e-179 633.3 629 55.2
Psat5g126400 Pisum sativum HOM05D004604 ORTHO05D005744 4.9e-178 628.6 643 54.1
THA.LOC104816553 Tarenaya hassleriana HOM05D004604 ORTHO05D005744 4.9e-178 628.6 628 54.3
arahy.Tifrunner.gnm1.ann1.E2DHW8 Arachis hypogaea HOM05D004604 ORTHO05D005744 5.4e-177 625.2 624 52.9
TPR.G2507 Trifolium pratense HOM05D004604 ORTHO05D005744 9.2e-177 624.4 643 54.0
Hma1.2p1_0446F.1_g154570 Hydrangea macrophylla HOM05D004604 ORTHO05D005744 1.6e-176 623.6 634 54.1
Peaxi162Scf00825g00019 Petunia axillaris HOM05D004604 ORTHO05D005744 6.0e-176 621.7 623 54.1
HanXRQChr14g0459851 Helianthus annuus HOM05D004604 ORTHO05D005744 7.8e-176 621.3 620 54.4
CsaV3_6G001760 Cucumis sativus L. HOM05D004604 ORTHO05D005744 1.0e-175 620.9 638 51.7
FAN01G3126 Fragaria x ananassa HOM05D004604 ORTHO05D005744 1.3e-175 620.5 688 50.1
Lsat_1_v5_gn_2_122780 Lactuca sativa HOM05D004604 ORTHO05D005744 1.7e-175 620.2 630 53.8
Sopen06g017720 Solanum pennellii HOM05D004604 ORTHO05D005744 1.5e-174 617.1 638 53.1
VMungo1383G0266 Vigna mungo HOM05D004604 ORTHO05D005744 1.5e-174 617.1 633 54.2
Nitab4.5_0000802g0040 Nicotiana tabacum HOM05D004604 ORTHO05D005744 1.6e-173 613.6 618 52.9
Lalb_Chr15g0084181 Lupinus albus HOM05D004604 ORTHO05D005744 3.6e-173 612.5 630 54.0
SGA_v2.0_scaffold76G25082 Striga asiatica HOM05D004604 ORTHO05D005744 5.2e-172 608.6 633 51.5
Nitab4.5_0005174g0010 Nicotiana tabacum HOM05D004604 ORTHO05D005744 1.5e-171 607.1 618 53.1
FAN06G3796 Fragaria x ananassa HOM05D004604 ORTHO05D005744 8.4e-170 601.3 599 54.6
PGSC0003DMG400023817 Solanum tuberosum HOM05D004604 ORTHO05D005744 7.1e-169 598.2 640 52.0
MELO3C008290.2 Cucumis melo HOM05D004604 ORTHO05D005744 1.2e-168 597.4 626 51.6
Sp6g37190 Schrenkiella parvula HOM05D004604 ORTHO05D005744 7.8e-168 594.7 636 51.6
Solyc06g051760.3 Solanum lycopersicum HOM05D004604 ORTHO05D005744 1.7e-167 593.6 638 51.7
MBI05_g34496_MAGBIO Magnolia biondii HOM05D004604 ORTHO05D005744 5.1e-167 592.0 578 56.4
Eucgr.J00226 Eucalyptus grandis HOM05D004604 ORTHO05D005744 6.6e-167 591.7 655 51.5
Dinv17981 Davidia involucrata HOM05D004604 ORTHO05D005744 1.9e-166 590.1 494 62.1
AL6G15600 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 1.2e-165 587.4 627 50.9
EL10Ac2g04814 Beta vulgaris HOM05D004604 ORTHO05D005744 3.6e-165 585.9 641 49.8
Aa31LG11G6730 Aethionema arabicum HOM05D004604 ORTHO05D005744 4.7e-165 585.5 622 50.5
CAN.G17.11 Capsicum annuum HOM05D004604 ORTHO05D005744 4.7e-165 585.5 621 51.9
Eucgr.J00228 Eucalyptus grandis HOM05D004604 ORTHO05D005744 6.2e-165 585.1 641 50.4
Haze_17214 Corylus avellana HOM05D004604 ORTHO05D005744 1.8e-164 583.6 642 51.6
A10p30660 Brassica napus HOM05D004604 ORTHO05D005744 1.2e-163 580.9 614 52.4
ATR0618G256 Amborella trichopoda HOM05D004604 ORTHO05D005744 7.6e-163 578.2 665 51.0
AT5G05700 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 1.3e-162 577.4 636 50.2
Eucgr.J00230 Eucalyptus grandis HOM05D004604 ORTHO05D005744 1.7e-162 577.0 626 50.0
Sabra08G0049200 Salix brachista HOM05D004604 ORTHO05D005744 4.9e-162 575.5 568 53.3
C09p71140 Brassica napus HOM05D004604 ORTHO05D005744 6.4e-162 575.1 612 51.5
Carub.0003s1055 Capsella rubella HOM05D004604 ORTHO05D005744 8.4e-162 574.7 628 49.5
Migut.F01373 Erythranthe guttata HOM05D004604 ORTHO05D005744 1.1e-161 574.3 608 50.0
BolC9t59876H Brassica oleracea HOM05D004604 ORTHO05D005744 1.4e-161 573.9 612 51.1
Ah.16g103410 Amaranthus hybridus HOM05D004604 ORTHO05D005744 4.2e-161 572.4 644 49.1
MSTRG.213 Avicennia marina HOM05D004604 ORTHO05D005744 5.4e-161 572.0 602 52.2
BraA10t45107Z Brassica rapa HOM05D004604 ORTHO05D005744 5.4e-161 572.0 652 49.8
AL3G22760 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 7.8e-160 568.2 626 50.2
HanXRQChr14g0459841 Helianthus annuus HOM05D004604 ORTHO05D005744 8.7e-159 564.7 613 51.2
Migut.F01374 Erythranthe guttata HOM05D004604 ORTHO05D005744 1.5e-158 563.9 605 50.1
Hund15948 Selenicereus undatus HOM05D004604 ORTHO05D005744 7.3e-158 561.6 624 49.0
vmacro06977 Vaccinium macrocarpon HOM05D004604 ORTHO05D005744 2.1e-157 560.1 636 49.5
Haze_17213 Corylus avellana HOM05D004604 ORTHO05D005744 6.2e-157 558.5 613 51.4
Os05g0446800 Oryza sativa ssp. japonica HOM05D004604 ORTHO05D005744 9.0e-156 554.7 629 49.6
CARHR085800 Cardamine hirsuta HOM05D004604 ORTHO05D005744 3.4e-155 552.7 631 48.7
BcaB06g25636 Brassica carinata HOM05D004604 ORTHO05D005744 7.6e-155 551.6 617 49.3
FAN03G0827 Fragaria x ananassa HOM05D004604 ORTHO05D005744 9.9e-155 551.2 708 45.8
DCAR_028567 Daucus carota HOM05D004604 ORTHO05D005744 1.7e-154 550.4 585 52.1
BcaC06g32278 Brassica carinata HOM05D004604 ORTHO05D005744 3.8e-154 549.3 611 50.2
Sp3g09520 Schrenkiella parvula HOM05D004604 ORTHO05D005744 4.9e-154 548.9 627 47.7
BcaC05g29392 Brassica carinata HOM05D004604 ORTHO05D005744 1.1e-153 547.7 614 48.4
C05p56850 Brassica napus HOM05D004604 ORTHO05D005744 1.1e-153 547.7 614 48.4
Potri.008G067000 Populus trichocarpa HOM05D004604 ORTHO05D005744 2.4e-153 546.6 541 53.8
BolC5t34349H Brassica oleracea HOM05D004604 ORTHO05D005744 3.2e-153 546.2 614 48.2
A05p38060 Brassica napus HOM05D004604 ORTHO05D005744 4.2e-153 545.8 609 48.3
BraA05t22598Z Brassica rapa HOM05D004604 ORTHO05D005744 4.2e-153 545.8 609 48.3
Sed0013753 Sechium edule HOM05D004604 ORTHO05D005744 9.3e-153 544.7 482 57.3
Oeu048694.1 Olea europaea HOM05D004604 ORTHO05D005744 1.8e-151 540.4 493 56.2
Cpa.g.sc19.187 Carica papaya HOM05D004604 ORTHO05D005744 2.3e-151 540.0 556 51.8
AUR62022867 Chenopodium quinoa HOM05D004604 ORTHO05D005744 1.9e-150 537.0 594 50.0
Actinidia29693 Actinidia chinensis HOM05D004604 ORTHO05D005744 7.4e-150 535.0 606 49.5
unitig_62.g23928 Utricularia gibba HOM05D004604 ORTHO05D005744 1.8e-148 530.4 648 45.5
CARHR207580 Cardamine hirsuta HOM05D004604 ORTHO05D005744 2.4e-148 530.0 590 48.6
Eucgr.J00232 Eucalyptus grandis HOM05D004604 ORTHO05D005744 2.0e-147 526.9 569 51.1
arahy.Tifrunner.gnm1.ann1.C37ZT5 Arachis hypogaea HOM05D004604 ORTHO05D005744 3.8e-146 522.7 562 51.1
Cpa.g.sc19.188 Carica papaya HOM05D004604 ORTHO05D005744 7.9e-144 515.0 490 55.9
CDE03G0502 Ceratophyllum demersum HOM05D004604 ORTHO05D005744 7.9e-144 515.0 571 49.7
Aa31LG3G4550 Aethionema arabicum HOM05D004604 ORTHO05D005744 1.8e-143 513.8 678 44.5
SEGI_40640 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 9.6e-142 508.1 616 47.6
Carub.0006s0459 Capsella rubella HOM05D004604 ORTHO05D005744 1.3e-141 507.7 568 49.8
Gohir.D10G247400 Gossypium hirsutum HOM05D004604 ORTHO05D005744 1.6e-141 507.3 476 57.8
Zm00001eb348230 Zea mays HOM05D004604 ORTHO05D005744 1.8e-140 503.8 520 51.7
Sc11g0007180 Simmondsia chinensis HOM05D004604 ORTHO05D005744 2.2e-130 470.3 519 51.4
Peaxi162Scf01208g00144 Petunia axillaris HOM05D004604 ORTHO05D005744 8.7e-127 458.4 527 49.9
SEGI_28443 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 9.4e-121 438.3 467 50.5
SEGI_33236 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 9.4e-121 438.3 467 50.5
Eucgr.J00227 Eucalyptus grandis HOM05D004604 ORTHO05D005744 8.8e-119 431.8 421 54.4
Actinidia33931 Actinidia chinensis HOM05D004604 ORTHO05D005744 7.7e-115 418.7 593 44.5
Pp3c3_24950 Physcomitrium patens HOM05D004604 ORTHO05D005744 2.9e-114 416.8 710 38.7
AUR62012235 Chenopodium quinoa HOM05D004604 ORTHO05D005744 2.1e-112 410.6 515 45.6
AT3G11240 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 6.1e-112 409.1 470 49.4
Thhalv10013820m.g Eutrema salsugineum HOM05D004604 ORTHO05D005744 1.1e-108 398.3 392 55.1
HanXRQChr06g0172261 Helianthus annuus HOM05D004604 ORTHO05D005744 7.0e-108 395.6 453 48.1
COL.COLO4_25696 Corchorus olitorius HOM05D004604 ORTHO05D005744 8.5e-106 388.7 628 41.4
AagrBONN_evm.TU.Sc2ySwM_117.2751 Anthoceros agrestis HOM05D004604 ORTHO05D005744 1.1e-105 388.3 512 44.1
Mapoly0067s0057 Marchantia polymorpha HOM05D004604 ORTHO05D005744 4.2e-105 386.3 617 39.4
SMO118G0549 Selaginella moellendorffii HOM05D004604 ORTHO05D005744 2.4e-100 370.5 513 44.4
PRCOL_00002395 Prasinoderma coloniale HOM05D004604 ORTHO05D005744 2.9e-77 293.9 532 38.5
CBR_g49483 Chara braunii HOM05D004604 ORTHO05D005744 2.2e-69 267.7 498 35.1
HPP92_018034 Vanilla planifolia HOM05D004604 ORTHO05D005744 7.3e-57 226.1 294 44.9
arahy.Tifrunner.gnm1.ann1.3RRJ97 Arachis hypogaea HOM05D004604 ORTHO05D005744 5.8e-54 216.5 325 40.6
PSO339G5386 Papaver somniferum HOM05D004604 ORTHO05D005744 1.0e-50 205.7 134 73.1
MCO15G553 Micromonas commoda HOM05D004604 ORTHO05D005744 9.6e-49 199.1 406 31.3
Cre13.g580600 Chlamydomonas reinhardtii HOM05D004604 ORTHO05D005744 4.0e-47 193.7 195 48.7
Cfa022588 Carpinus fangiana HOM05D004604 ORTHO05D005744 1.2e-22 112.5 165 34.5
Peaxi162Scf01208g00156 Petunia axillaris HOM05D004604 ORTHO05D005744 5.8e-22 110.2 64 75.0
HPP92_018033 Vanilla planifolia HOM05D004604 ORTHO05D005744 1.8e-18 98.6 156 41.7
Oeu025172.2 Olea europaea HOM05D004604 ORTHO05D005744 1.7e-08 65.5 128 38.3
CDE04G1491 Ceratophyllum demersum HOM05D004604 ORTHO05D005744 6.3e-08 63.5 67 50.7
SEGI_38081 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 3.1e-07 61.2 54 53.7
CBR_g49485 Chara braunii HOM05D000019 ORTHO05D000048 5.3e-07 60.5 39 66.7


User provided reference genes

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