Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy4G02317 Aquilegia oxysepala HOM05D004608 ORTHO05D006533 2.9e-227 791.6 410 100.0
Potri.011G166100 Populus trichocarpa HOM05D004608 ORTHO05D006533 1.6e-177 626.3 411 78.3
Potri.001G469300 Populus trichocarpa HOM05D004608 ORTHO05D006533 2.8e-177 625.5 412 79.4
Ciclev10008478m.g Citrus clementina HOM05D004608 ORTHO05D006533 8.1e-177 624.0 411 78.3
Prupe.6G031700 Prunus persica HOM05D004608 ORTHO05D006533 1.5e-175 619.8 410 77.1
Cfa016939 Carpinus fangiana HOM05D004608 ORTHO05D006533 3.4e-175 618.6 413 78.9
MD03G1039600 Malus domestica HOM05D004608 ORTHO05D006533 3.4e-175 618.6 410 77.1
Duzib213G0525 Durio zibethinus HOM05D004608 ORTHO05D006533 7.6e-175 617.5 410 78.3
Lj1C897G12 Lonicera japonica HOM05D004608 ORTHO05D006533 2.2e-174 615.9 413 76.8
Sabra16G0318300 Salix brachista HOM05D004608 ORTHO05D006533 3.8e-174 615.1 416 76.4
MD11G1040100 Malus domestica HOM05D004608 ORTHO05D006533 4.2e-173 611.7 410 76.1
QL08p001615 Quercus lobata HOM05D004608 ORTHO05D006533 5.4e-173 611.3 410 77.8
MBI14_g00953_MAGBIO Magnolia biondii HOM05D004608 ORTHO05D006533 1.2e-172 610.1 411 76.4
Eucgr.F03661 Eucalyptus grandis HOM05D004608 ORTHO05D006533 4.6e-172 608.2 414 76.6
Atru.chr2.3848 Acer truncatum HOM05D004608 ORTHO05D006533 6.0e-172 607.8 408 77.2
Gohir.A13G130142 Gossypium hirsutum HOM05D004608 ORTHO05D006533 1.3e-171 606.7 412 76.5
CiPaw.12G141700 Carya illinoinensis HOM05D004608 ORTHO05D006533 6.6e-171 604.4 411 76.2
COL.COLO4_07760 Corchorus olitorius HOM05D004608 ORTHO05D006533 8.7e-171 604.0 410 75.9
Gohir.D13G133200 Gossypium hirsutum HOM05D004608 ORTHO05D006533 8.7e-171 604.0 413 76.5
TWI38G1265 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 2.5e-170 602.4 410 75.6
TWI38G2408 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 2.5e-170 602.4 410 75.6
GSVIVG01014786001 Vitis vinifera HOM05D004608 ORTHO05D006533 3.3e-170 602.1 412 76.5
Thecc.07G005400 Theobroma cacao HOM05D004608 ORTHO05D006533 4.3e-170 601.7 410 76.6
PGR031G2516 Punica granatum HOM05D004608 ORTHO05D006533 5.6e-170 601.3 413 75.3
Cpa.g.sc12.91 Carica papaya HOM05D004608 ORTHO05D006533 7.3e-170 600.9 411 75.4
Nn1g07694 Nelumbo nucifera HOM05D004608 ORTHO05D006533 1.3e-169 600.1 410 76.3
Hund22995 Selenicereus undatus HOM05D004608 ORTHO05D006533 2.8e-169 599.0 412 75.0
PSO541G2325 Papaver somniferum HOM05D004608 ORTHO05D006533 3.6e-169 598.6 412 74.8
Gorai.013G149500 Gossypium raimondii HOM05D004608 ORTHO05D006533 8.1e-169 597.4 421 75.1
Glyma.18G072500 Glycine max HOM05D004608 ORTHO05D006533 2.4e-168 595.9 416 75.2
HanXRQChr05g0160221 Helianthus annuus HOM05D004608 ORTHO05D006533 2.4e-168 595.9 412 75.2
SGA_v2.0_scaffold168G38588 Striga asiatica HOM05D004608 ORTHO05D006533 3.1e-168 595.5 413 76.0
Rhsim06G0233900 Rhododendron simsii HOM05D004608 ORTHO05D006533 2.0e-167 592.8 411 75.2
Sed0006020 Sechium edule HOM05D004608 ORTHO05D006533 2.0e-167 592.8 408 75.2
EL10Ac4g07509 Beta vulgaris HOM05D004608 ORTHO05D006533 4.5e-167 591.7 412 74.8
Ca_14850_v3 Cicer arietinum L. HOM05D004608 ORTHO05D006533 5.8e-167 591.3 417 75.1
RcHm_v2.0_Chr5g0075221 Rosa chinensis HOM05D004608 ORTHO05D006533 5.8e-167 591.3 411 75.4
CAN.G492.45 Capsicum annuum HOM05D004608 ORTHO05D006533 1.3e-166 590.1 413 76.0
FvH4_3g42010 Fragaria vesca HOM05D004608 ORTHO05D006533 1.3e-166 590.1 411 75.7
Glyma.08G337500 Glycine max HOM05D004608 ORTHO05D006533 1.3e-166 590.1 415 74.9
HanXRQChr11g0334621 Helianthus annuus HOM05D004608 ORTHO05D006533 2.2e-166 589.3 411 74.5
VMungo0540G0162 Vigna mungo HOM05D004608 ORTHO05D006533 2.2e-166 589.3 416 74.3
Haze_09894 Corylus avellana HOM05D004608 ORTHO05D006533 2.9e-166 589.0 425 74.4
Migut.M01599 Erythranthe guttata HOM05D004608 ORTHO05D006533 6.4e-166 587.8 416 74.3
FAN16G3187 Fragaria x ananassa HOM05D004608 ORTHO05D006533 1.9e-165 586.3 422 74.2
CsaV3_7G021370 Cucumis sativus L. HOM05D004608 ORTHO05D006533 4.2e-165 585.1 408 73.8
DCAR_017596 Daucus carota HOM05D004608 ORTHO05D006533 4.2e-165 585.1 407 74.2
FAN25G0703 Fragaria x ananassa HOM05D004608 ORTHO05D006533 4.2e-165 585.1 422 73.9
Gohir.D05G386600 Gossypium hirsutum HOM05D004608 ORTHO05D006533 1.6e-164 583.2 411 74.0
Actinidia30368 Actinidia chinensis HOM05D004608 ORTHO05D006533 4.6e-164 581.6 411 74.2
CSS0047803 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 4.6e-164 581.6 412 73.8
Gohir.A04G003100 Gossypium hirsutum HOM05D004608 ORTHO05D006533 4.6e-164 581.6 411 74.0
Gorai.009G453300 Gossypium raimondii HOM05D004608 ORTHO05D006533 4.6e-164 581.6 411 73.7
Cc05_g15480 Coffea canephora HOM05D004608 ORTHO05D006533 6.0e-164 581.3 414 73.9
Sabra11G0139800 Salix brachista HOM05D004608 ORTHO05D006533 6.0e-164 581.3 448 69.6
Sopen10g001840 Solanum pennellii HOM05D004608 ORTHO05D006533 6.0e-164 581.3 412 75.2
Lsat_1_v5_gn_7_116460 Lactuca sativa HOM05D004608 ORTHO05D006533 7.9e-164 580.9 414 73.9
Solyc10g005890.3 Solanum lycopersicum HOM05D004608 ORTHO05D006533 7.9e-164 580.9 412 75.0
Phvul.006G060300 Phaseolus vulgaris HOM05D004608 ORTHO05D006533 1.0e-163 580.5 415 74.0
ClCG09G021670 Citrullus lanatus HOM05D004608 ORTHO05D006533 1.3e-163 580.1 430 71.2
THA.LOC104815684 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 2.3e-163 579.3 414 72.5
Sed0022757 Sechium edule HOM05D004608 ORTHO05D006533 3.0e-163 578.9 408 73.5
vmacro11628 Vaccinium macrocarpon HOM05D004608 ORTHO05D006533 3.9e-163 578.6 426 72.3
FAN21G2140 Fragaria x ananassa HOM05D004608 ORTHO05D006533 6.7e-163 577.8 442 70.8
arahy.Tifrunner.gnm1.ann1.R4UTE8 Arachis hypogaea HOM05D004608 ORTHO05D006533 8.7e-163 577.4 418 72.7
PGSC0003DMG400014406 Solanum tuberosum HOM05D004608 ORTHO05D006533 1.1e-162 577.0 407 74.9
TPR.G17932 Trifolium pratense HOM05D004608 ORTHO05D006533 1.1e-162 577.0 413 73.4
FAN11G3108 Fragaria x ananassa HOM05D004608 ORTHO05D006533 2.5e-162 575.9 442 70.4
Thhalv10020839m.g Eutrema salsugineum HOM05D004608 ORTHO05D006533 1.6e-161 573.2 411 73.0
AL3G25090 Arabidopsis lyrata HOM05D004608 ORTHO05D006533 2.1e-161 572.8 417 72.7
Sp3g11470 Schrenkiella parvula HOM05D004608 ORTHO05D006533 2.1e-161 572.8 412 73.1
AUR62017165 Chenopodium quinoa HOM05D004608 ORTHO05D006533 6.2e-161 571.2 409 73.1
AT3G13235 Arabidopsis thaliana HOM05D004608 ORTHO05D006533 8.1e-161 570.9 417 72.7
AUR62035639 Chenopodium quinoa HOM05D004608 ORTHO05D006533 1.4e-160 570.1 409 72.9
arahy.Tifrunner.gnm1.ann1.EI2AUC Arachis hypogaea HOM05D004608 ORTHO05D006533 1.8e-160 569.7 429 70.4
Os02g0198600 Oryza sativa ssp. japonica HOM05D004608 ORTHO05D006533 1.8e-160 569.7 417 73.1
MSTRG.7029 Avicennia marina HOM05D004608 ORTHO05D006533 2.4e-160 569.3 415 71.8
MELO3C013214.2 Cucumis melo HOM05D004608 ORTHO05D006533 2.4e-160 569.3 408 72.5
Lalb_Chr15g0082461 Lupinus albus HOM05D004608 ORTHO05D006533 3.1e-160 568.9 414 72.9
ECA236G2785 Erigeron canadensis HOM05D004608 ORTHO05D006533 4.0e-160 568.5 417 72.7
CANSAT11G0422 Cannabis sativa HOM05D004608 ORTHO05D006533 5.3e-160 568.2 413 71.4
CSS0013715 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 2.0e-159 566.2 410 72.4
CARHR087890 Cardamine hirsuta HOM05D004608 ORTHO05D006533 7.6e-159 564.3 416 71.6
Lj6g0013957 Lotus japonicus HOM05D004608 ORTHO05D006533 2.9e-158 562.4 413 72.2
Oeu026626.2 Olea europaea HOM05D004608 ORTHO05D006533 6.5e-158 561.2 419 70.2
BraA03t12964Z Brassica rapa HOM05D004608 ORTHO05D006533 5.5e-157 558.1 415 71.6
A03p38110 Brassica napus HOM05D004608 ORTHO05D006533 1.2e-156 557.0 415 71.3
C03p46240 Brassica napus HOM05D004608 ORTHO05D006533 4.6e-156 555.1 421 70.5
Carub.0003s1265 Capsella rubella HOM05D004608 ORTHO05D006533 6.0e-156 554.7 418 71.1
BolC3t16895H Brassica oleracea HOM05D004608 ORTHO05D006533 6.7e-155 551.2 423 70.4
Nitab4.5_0007214g0010 Nicotiana tabacum HOM05D004608 ORTHO05D006533 8.7e-155 550.8 413 72.2
Aa31LG8G500 Aethionema arabicum HOM05D004608 ORTHO05D006533 1.9e-154 549.7 424 68.4
Dinv40894 Davidia involucrata HOM05D004608 ORTHO05D006533 2.5e-154 549.3 359 78.6
C01p51800 Brassica napus HOM05D004608 ORTHO05D006533 5.7e-154 548.1 414 70.3
Peaxi162Scf00219g00158 Petunia axillaris HOM05D004608 ORTHO05D006533 4.8e-153 545.0 418 70.6
HPP92_021912 Vanilla planifolia HOM05D004608 ORTHO05D006533 8.2e-153 544.3 414 69.8
ATR0587G001 Amborella trichopoda HOM05D004608 ORTHO05D006533 1.4e-152 543.5 391 72.9
TAR624G0837 Trochodendron aralioides HOM05D004608 ORTHO05D006533 2.0e-151 539.7 412 70.9
A01p40280 Brassica napus HOM05D004608 ORTHO05D006533 8.4e-150 534.3 415 68.9
BraA01t04064Z Brassica rapa HOM05D004608 ORTHO05D006533 9.3e-149 530.8 417 69.1
Manes.05G206400 Manihot esculenta HOM05D004608 ORTHO05D006533 4.6e-148 528.5 341 78.3
Psat5g164640 Pisum sativum HOM05D004608 ORTHO05D006533 1.9e-146 523.1 347 76.4
THA.LOC104801910 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 9.7e-146 520.8 367 73.6
THA.LOC104810298 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 9.7e-146 520.8 367 73.6
TAR626G0684 Trochodendron aralioides HOM05D004608 ORTHO05D006533 6.5e-142 508.1 315 81.0
Zm00001eb205890 Zea mays HOM05D004608 ORTHO05D006533 6.5e-142 508.1 348 76.4
Hma1.2p1_0193F.1_g084100 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 4.2e-141 505.4 477 60.6
Hma1.2p1_2995F.1_g331425 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 4.2e-141 505.4 477 60.6
Duzib268G0270 Durio zibethinus HOM05D004608 ORTHO05D006533 4.5e-135 485.3 411 65.5
Nitab4.5_0001622g0040 Nicotiana tabacum HOM05D004608 ORTHO05D006533 3.9e-131 472.2 358 70.9
Pp3c4_20890 Physcomitrium patens HOM05D004608 ORTHO05D006533 4.4e-130 468.8 416 58.9
BolC1t05127H Brassica oleracea HOM05D004608 ORTHO05D006533 5.9e-127 458.4 419 61.8
AagrBONN_evm.TU.Sc2ySwM_117.3155 Anthoceros agrestis HOM05D004608 ORTHO05D006533 1.9e-125 453.4 424 55.7
Mapoly0030s0110 Marchantia polymorpha HOM05D004608 ORTHO05D006533 1.1e-112 411.0 334 61.4
Sc03g0011700 Simmondsia chinensis HOM05D004608 ORTHO05D006533 2.7e-111 406.4 264 77.7
Oeu019694.2 Olea europaea HOM05D004608 ORTHO05D006533 1.9e-109 400.2 428 55.1
Oeu019695.1 Olea europaea HOM05D004608 ORTHO05D006533 1.9e-109 400.2 407 57.5
Ah.06g180960 Amaranthus hybridus HOM05D004608 ORTHO05D006533 2.9e-102 376.3 342 61.1
unitig_899.g15266 Utricularia gibba HOM05D004608 ORTHO05D006533 4.4e-98 362.5 324 63.6
Actinidia10581 Actinidia chinensis HOM05D004608 ORTHO05D006533 1.9e-93 347.1 363 56.7
CBR_g36902 Chara braunii HOM05D004608 ORTHO05D006533 7.8e-87 325.1 316 55.4
MCO11G772 Micromonas commoda HOM05D004608 ORTHO05D006533 1.2e-82 311.2 419 43.9
CDE05G0237 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 3.6e-76 289.7 261 61.7
PRCOL_00000426 Prasinoderma coloniale HOM05D004608 ORTHO05D006533 1.3e-73 281.2 424 39.9
Cre10.g447300 Chlamydomonas reinhardtii HOM05D004608 ORTHO05D006533 3.3e-69 266.5 474 35.7
Pp3c17_4800 Physcomitrium patens HOM05D004608 ORTHO05D006533 4.7e-68 262.7 466 39.3
Aa31LG10G450 Aethionema arabicum HOM05D004608 ORTHO05D006533 9.0e-59 231.9 325 43.7
CDE05G1663 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 4.9e-57 226.1 130 83.8
QL09p009005 Quercus lobata HOM05D000176 ORTHO05D000106 2.1e-55 220.7 134 83.6
Aa31LG10G470 Aethionema arabicum HOM05D004608 ORTHO05D006533 1.9e-53 214.2 315 41.6
Cfa022177 Carpinus fangiana HOM05D004608 ORTHO05D006533 1.9e-48 197.6 329 38.3
unitig_699.g19599 Utricularia gibba HOM05D004608 ORTHO05D006533 3.5e-47 193.4 335 35.5
CSS0026438 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 2.4e-43 180.6 117 75.2
CSS0036658 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 5.3e-43 179.5 113 77.9
AL5G25300 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 3.0e-38 163.7 131 67.9
Ah.06g180950 Amaranthus hybridus HOM05D004608 ORTHO05D006533 2.0e-34 151.0 131 61.1
QL05p082689 Quercus lobata HOM05D004608 ORTHO05D006533 1.7e-33 147.9 98 78.6
AUR62020809 Chenopodium quinoa HOM05D004608 ORTHO05D006533 6.7e-30 136.0 126 61.1
AL3G34310 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 1.9e-24 117.9 165 46.1
MD12G1084200 Malus domestica HOM05D004608 ORTHO05D249232 2.5e-24 117.5 65 89.2
CSS0047513 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 2.3e-22 110.9 58 84.5
VMungo0954G0002 Vigna mungo HOM05D004608 ORTHO05D432787 3.1e-19 100.5 133 48.1
CDE05G3009 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 2.9e-17 94.0 69 66.7
unitig_899.g15265 Utricularia gibba HOM05D004608 ORTHO05D018951 7.2e-16 89.4 99 54.5
A05p36340 Brassica napus HOM05D004608 ORTHO05D006533 1.6e-15 88.2 65 67.7
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 5.1e-14 83.2 106 51.9
CBR_g31527 Chara braunii HOM05D004608 ORTHO05D006533 9.7e-13 79.0 96 42.7
Ca_07476_v3 Cicer arietinum L. HOM05D004608 ORTHO05D018951 1.6e-10 71.6 60 63.3
CDE05G1534 Ceratophyllum demersum HOM05D004608 ORTHO05D018951 6.5e-09 66.2 49 63.3
TAR629G0124 Trochodendron aralioides HOM05D002759 ORTHO05D021026 1.9e-08 64.7 44 70.5
Glyma.10G116100 Glycine max HOM05D004608 ORTHO05D021061 7.2e-08 62.8 48 60.4
CDE05G2773 Ceratophyllum demersum HOM05D004608 ORTHO05D018951 9.4e-08 62.4 72 54.2
QL03p010974 Quercus lobata HOM05D003881 ORTHO05D004343 1.6e-07 61.6 43 69.8
Sopen12g018380 Solanum pennellii HOM05D000691 ORTHO05D000378 4.0e-06 57.0 120 27.5
HanXRQChr05g0144601 Helianthus annuus HOM05D004608 ORTHO05D018951 5.2e-06 56.6 36 72.2
HanXRQChr08g0229721 Helianthus annuus HOM05D004608 ORTHO05D018951 5.2e-06 56.6 36 72.2
HanXRQChr12g0367991 Helianthus annuus HOM05D004608 ORTHO05D018951 5.2e-06 56.6 36 72.2
Sopen04g010080 Solanum pennellii HOM05D000004 ORTHO05D000002 5.2e-06 56.6 120 27.5
Sopen07g021860 Solanum pennellii HOM05D000004 ORTHO05D000002 5.2e-06 56.6 120 27.5
QL05p082760 Quercus lobata HOM05D004608 ORTHO05D338097 6.7e-06 56.2 35 74.3
Sopen07g004930 Solanum pennellii HOM05D000004 ORTHO05D000002 6.7e-06 56.2 120 27.5
Sopen07g015160 Solanum pennellii HOM05D000691 ORTHO05D000378 6.7e-06 56.2 120 27.5


User provided reference genes

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