Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy4G02281 Aquilegia oxysepala HOM05D004535 ORTHO05D005341 0.0e+00 3593.9 1807 100.0
TAR627G0331 Trochodendron aralioides HOM05D004535 ORTHO05D005341 0.0e+00 2874.3 1816 78.6
GSVIVG01014769001 Vitis vinifera HOM05D004535 ORTHO05D005341 0.0e+00 2816.2 1816 77.2
Dinv19653 Davidia involucrata HOM05D004535 ORTHO05D005341 0.0e+00 2780.4 1821 75.6
Prupe.6G032900 Prunus persica HOM05D004535 ORTHO05D005341 0.0e+00 2750.3 1816 74.4
Atru.chr2.3782 Acer truncatum HOM05D004535 ORTHO05D005341 0.0e+00 2744.1 1817 74.8
PSO210G5731 Papaver somniferum HOM05D004535 ORTHO05D005341 0.0e+00 2716.8 1815 74.5
MD11G1042000 Malus domestica HOM05D004535 ORTHO05D005341 0.0e+00 2716.0 1816 73.7
Manes.01G005500 Manihot esculenta HOM05D004535 ORTHO05D005341 0.0e+00 2712.9 1816 74.3
Hma1.2p1_0193F.1_g084240 Hydrangea macrophylla HOM05D004535 ORTHO05D005341 0.0e+00 2709.5 1814 73.3
Ciclev10007234m.g Citrus clementina HOM05D004535 ORTHO05D005341 0.0e+00 2707.6 1822 73.4
MD03G1040600 Malus domestica HOM05D004535 ORTHO05D005341 0.0e+00 2707.6 1814 73.5
CSS0018371 Camellia sinensis var. sinensis HOM05D004535 ORTHO05D005341 0.0e+00 2705.6 1818 73.9
CiPaw.11G209600 Carya illinoinensis HOM05D004535 ORTHO05D005341 0.0e+00 2702.5 1817 73.8
Potri.001G470600 Populus trichocarpa HOM05D004535 ORTHO05D005341 0.0e+00 2697.5 1818 72.9
Rhsim04G0008600 Rhododendron simsii HOM05D004535 ORTHO05D005341 0.0e+00 2694.1 1834 73.0
RcHm_v2.0_Chr5g0075021 Rosa chinensis HOM05D004535 ORTHO05D005341 0.0e+00 2692.1 1820 72.8
Lj1C898T24 Lonicera japonica HOM05D004535 ORTHO05D005341 0.0e+00 2684.8 1836 73.4
FAN16G2454 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 2682.1 1820 72.7
FAN11G1653 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 2680.6 1820 72.7
TWI38G2299 Tripterygium wilfordii HOM05D004535 ORTHO05D005341 0.0e+00 2679.0 1818 73.7
FAN21G2952 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 2674.4 1820 72.6
FAN25G2892 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 2671.3 1820 72.5
CANSAT11G1644 Cannabis sativa HOM05D004535 ORTHO05D005341 0.0e+00 2664.8 1819 72.6
Thecc.07G003100 Theobroma cacao HOM05D004535 ORTHO05D005341 0.0e+00 2659.0 1764 74.3
vmacro09603 Vaccinium macrocarpon HOM05D004535 ORTHO05D005341 0.0e+00 2651.3 1927 69.4
Gorai.009G454100 Gossypium raimondii HOM05D004535 ORTHO05D005341 0.0e+00 2645.2 1805 73.1
Sabra11G0138700 Salix brachista HOM05D004535 ORTHO05D005341 0.0e+00 2622.0 1973 67.3
PGR083G0052 Punica granatum HOM05D004535 ORTHO05D005341 0.0e+00 2620.1 1817 71.0
QL08p000781 Quercus lobata HOM05D004535 ORTHO05D005341 0.0e+00 2618.2 1771 73.6
Cc05_g15580 Coffea canephora HOM05D004535 ORTHO05D005341 0.0e+00 2610.1 1823 71.3
Haze_09903 Corylus avellana HOM05D004535 ORTHO05D005341 0.0e+00 2595.1 1853 70.8
Psat5g164120 Pisum sativum HOM05D004535 ORTHO05D005341 0.0e+00 2592.0 1820 70.5
Eucgr.F02001 Eucalyptus grandis HOM05D004535 ORTHO05D005341 0.0e+00 2588.9 1817 70.7
HanXRQChr03g0079281 Helianthus annuus HOM05D004535 ORTHO05D005341 0.0e+00 2587.8 1818 70.4
Gohir.D05G387450 Gossypium hirsutum HOM05D004535 ORTHO05D005341 0.0e+00 2584.7 1805 72.0
Migut.M01591 Erythranthe guttata HOM05D004535 ORTHO05D005341 0.0e+00 2582.0 1816 70.2
Solyc07g066030.4 Solanum lycopersicum HOM05D004535 ORTHO05D005341 0.0e+00 2581.6 1816 69.8
Sopen07g034220 Solanum pennellii HOM05D004535 ORTHO05D005341 0.0e+00 2579.7 1816 69.8
Medtr3g461520 Medicago truncatula HOM05D004535 ORTHO05D005341 0.0e+00 2579.3 1819 70.0
Glyma.18G071500 Glycine max HOM05D004535 ORTHO05D005341 0.0e+00 2576.6 1819 69.9
Lj6g0015552 Lotus japonicus HOM05D004535 ORTHO05D005341 0.0e+00 2574.7 1821 69.7
ECA240G2049 Erigeron canadensis HOM05D004535 ORTHO05D005341 0.0e+00 2570.8 1816 70.1
FvH4_3g41830 Fragaria vesca HOM05D004535 ORTHO05D005341 0.0e+00 2570.4 1757 72.2
Duzib213G0320 Durio zibethinus HOM05D004535 ORTHO05D005341 0.0e+00 2567.3 1818 71.0
Glyma.08G336400 Glycine max HOM05D004535 ORTHO05D005341 0.0e+00 2567.3 1820 69.6
Lalb_Chr18g0050431 Lupinus albus HOM05D004535 ORTHO05D005341 0.0e+00 2563.9 1819 69.5
MBI15_g37116_MAGBIO Magnolia biondii HOM05D004535 ORTHO05D005341 0.0e+00 2562.3 1789 72.1
TPR.G14720 Trifolium pratense HOM05D004535 ORTHO05D005341 0.0e+00 2560.4 1818 69.4
Sed0018073 Sechium edule HOM05D004535 ORTHO05D005341 0.0e+00 2556.9 1815 69.5
ClCG10G004180 Citrullus lanatus HOM05D004535 ORTHO05D005341 0.0e+00 2555.0 1833 69.4
Sc20g0000040 Simmondsia chinensis HOM05D004535 ORTHO05D005341 0.0e+00 2553.5 1817 69.6
Lalb_Chr20g0115261 Lupinus albus HOM05D004535 ORTHO05D005341 0.0e+00 2545.4 1819 68.9
MSTRG.15824 Avicennia marina HOM05D004535 ORTHO05D005341 0.0e+00 2535.4 1817 68.7
Phvul.006G061700 Phaseolus vulgaris HOM05D004535 ORTHO05D005341 0.0e+00 2533.8 1820 68.8
Nn1g08312 Nelumbo nucifera HOM05D004535 ORTHO05D005341 0.0e+00 2530.0 1623 77.5
BcaB04g18753 Brassica carinata HOM05D004535 ORTHO05D005341 0.0e+00 2529.6 1821 68.6
MELO3C014086.2 Cucumis melo HOM05D004535 ORTHO05D005341 0.0e+00 2529.2 1818 69.2
THA.LOC104822705 Tarenaya hassleriana HOM05D004535 ORTHO05D005341 0.0e+00 2526.5 1818 68.3
EL10Ac4g07499 Beta vulgaris HOM05D004535 ORTHO05D005341 0.0e+00 2523.0 1815 68.3
Thhalv10019881m.g Eutrema salsugineum HOM05D004535 ORTHO05D005341 0.0e+00 2519.2 1820 68.6
AL3G25150 Arabidopsis lyrata HOM05D004535 ORTHO05D005341 0.0e+00 2509.6 1820 68.0
Aa31LG8G550 Aethionema arabicum HOM05D004535 ORTHO05D005341 0.0e+00 2509.2 1818 68.0
SalBow8G3417 Salvia bowleyana HOM05D004535 ORTHO05D005341 0.0e+00 2509.2 1845 67.9
BraA03t12967Z Brassica rapa HOM05D004535 ORTHO05D005341 0.0e+00 2506.5 1820 68.1
BolC3t16899H Brassica oleracea HOM05D004535 ORTHO05D005341 0.0e+00 2506.1 1822 68.3
A03p38140 Brassica napus HOM05D004535 ORTHO05D005341 0.0e+00 2504.6 1820 68.0
AUR62017172 Chenopodium quinoa HOM05D004535 ORTHO05D005341 0.0e+00 2504.6 1836 67.6
CsaV3_3G003990 Cucumis sativus L. HOM05D004535 ORTHO05D005341 0.0e+00 2501.1 1818 68.5
BcaC01g03999 Brassica carinata HOM05D004535 ORTHO05D005341 0.0e+00 2500.7 1820 68.2
C03p46300 Brassica napus HOM05D004535 ORTHO05D005341 0.0e+00 2500.7 1818 68.0
Carub.0003s1271 Capsella rubella HOM05D004535 ORTHO05D005341 0.0e+00 2500.3 1818 67.8
AUR62035634 Chenopodium quinoa HOM05D004535 ORTHO05D005341 0.0e+00 2500.3 1820 67.9
Nitab4.5_0001303g0050 Nicotiana tabacum HOM05D004535 ORTHO05D005341 0.0e+00 2500.3 1799 68.1
Lsat_1_v5_gn_9_89621 Lactuca sativa HOM05D004535 ORTHO05D005341 0.0e+00 2496.8 1813 68.8
AT3G13330 Arabidopsis thaliana HOM05D004535 ORTHO05D005341 0.0e+00 2494.9 1820 67.6
Oeu013013.2 Olea europaea HOM05D004535 ORTHO05D005341 0.0e+00 2492.6 1893 66.7
arahy.Tifrunner.gnm1.ann1.DDNH16 Arachis hypogaea HOM05D004535 ORTHO05D005341 0.0e+00 2491.1 1901 65.6
HanXRQChr13g0409231 Helianthus annuus HOM05D004535 ORTHO05D005341 0.0e+00 2484.1 1816 68.4
VMungo0540G2510 Vigna mungo HOM05D004535 ORTHO05D005341 0.0e+00 2484.1 1764 69.6
CARHR087940 Cardamine hirsuta HOM05D004535 ORTHO05D005341 0.0e+00 2475.7 1821 67.6
Sp3g11530 Schrenkiella parvula HOM05D004535 ORTHO05D005341 0.0e+00 2474.5 1820 67.3
Gohir.A04G001901 Gossypium hirsutum HOM05D004535 ORTHO05D005341 0.0e+00 2461.0 1676 73.5
SalBow8G2487 Salvia bowleyana HOM05D004535 ORTHO05D005341 0.0e+00 2436.8 1823 66.6
ATR0751G071 Amborella trichopoda HOM05D004535 ORTHO05D005341 0.0e+00 2414.0 1819 65.9
Peaxi162Scf00232g00530 Petunia axillaris HOM05D004535 ORTHO05D005341 0.0e+00 2399.8 1833 66.0
DCAR_013765 Daucus carota HOM05D004535 ORTHO05D005341 0.0e+00 2392.1 1815 66.4
HPP92_018915 Vanilla planifolia HOM05D004535 ORTHO05D005341 0.0e+00 2390.1 1829 65.2
Hund22978 Selenicereus undatus HOM05D004535 ORTHO05D005341 0.0e+00 2378.2 1814 65.6
Medtr3g461500 Medicago truncatula HOM05D004535 ORTHO05D005341 0.0e+00 2372.4 1853 64.5
QL08p000755 Quercus lobata HOM05D004535 ORTHO05D005341 0.0e+00 2365.5 1945 62.8
Ah.06g180940 Amaranthus hybridus HOM05D004535 ORTHO05D005341 0.0e+00 2337.8 1837 63.4
Haze_09904 Corylus avellana HOM05D004535 ORTHO05D005341 0.0e+00 2300.4 1904 62.7
Actinidia03667 Actinidia chinensis HOM05D004535 ORTHO05D005341 0.0e+00 2259.2 1564 73.0
Nitab4.5_0000152g0130 Nicotiana tabacum HOM05D004535 ORTHO05D005341 0.0e+00 2258.8 1648 67.7
Zm00001eb281130 Zea mays HOM05D004535 ORTHO05D005341 0.0e+00 2182.5 1813 60.5
Ca_14867_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 0.0e+00 2136.7 1515 69.5
CiPaw.12G142100 Carya illinoinensis HOM05D004535 ORTHO05D005341 0.0e+00 2134.8 1679 64.7
Cpa.g.sc12.80 Carica papaya HOM05D004535 ORTHO05D005341 0.0e+00 2105.5 1740 63.0
arahy.Tifrunner.gnm1.ann1.HJC4WF Arachis hypogaea HOM05D004535 ORTHO05D005341 0.0e+00 2062.3 1447 69.5
CDE05G3236 Ceratophyllum demersum HOM05D004535 ORTHO05D005341 0.0e+00 1852.4 1446 64.9
MD00G1206400 Malus domestica HOM05D004535 ORTHO05D005341 0.0e+00 1787.3 1250 70.7
Potri.011G167700 Populus trichocarpa HOM05D004535 ORTHO05D005341 0.0e+00 1749.9 1146 73.5
unitig_699.g19598 Utricularia gibba HOM05D004535 ORTHO05D005341 0.0e+00 1704.9 1814 51.3
Mapoly0071s0029 Marchantia polymorpha HOM05D004535 ORTHO05D005341 0.0e+00 1416.7 1926 41.7
AagrBONN_evm.TU.Sc2ySwM_228.5886 Anthoceros agrestis HOM05D004535 ORTHO05D005341 0.0e+00 1409.4 1856 42.7
PGSC0003DMG401022150 Solanum tuberosum HOM05D004535 ORTHO05D005341 0.0e+00 1397.5 944 71.2
Pp3c20_11540 Physcomitrium patens HOM05D004535 ORTHO05D005341 0.0e+00 1390.2 1855 42.1
Mapoly0069s0005 Marchantia polymorpha HOM05D004535 ORTHO05D005341 0.0e+00 1362.1 1871 40.6
Pp3c15_5520 Physcomitrium patens HOM05D004535 ORTHO05D005341 0.0e+00 1266.5 1830 39.4
SMO184G0002 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 0.0e+00 1208.4 1858 38.4
SMO340G0109 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 0.0e+00 1171.0 1829 37.2
CAN.G623.63 Capsicum annuum HOM05D004535 ORTHO05D005341 0.0e+00 1168.7 863 68.1
SMO239G0001 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 0.0e+00 1098.2 1836 36.3
CAN.G623.64 Capsicum annuum HOM05D004535 ORTHO05D005341 2.6e-291 1006.5 945 56.8
Ca_14861_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 4.5e-288 995.7 713 67.9
CBR_g24134 Chara braunii HOM05D004535 ORTHO05D005341 3.8e-287 992.6 1969 33.6
Os06g0301300 Oryza sativa ssp. japonica HOM05D004535 ORTHO05D005341 2.3e-255 887.1 693 61.6
COL.COLO4_07778 Corchorus olitorius HOM05D004535 ORTHO05D005341 1.9e-254 884.0 1167 46.1
Potri.011G167650 Populus trichocarpa HOM05D004535 ORTHO05D005341 1.1e-198 698.7 505 70.5
Actinidia00829 Actinidia chinensis HOM05D004535 ORTHO05D005341 2.6e-166 591.3 628 56.1
SEGI_13123 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 2.0e-139 501.9 458 52.8
QL10p044954 Quercus lobata HOM05D004535 ORTHO05D005341 2.6e-134 485.0 638 46.4
MCO11G531 Micromonas commoda HOM05D004535 ORTHO05D005341 1.2e-120 439.5 1918 24.3
SEGI_38328 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 4.4e-118 431.0 467 48.8
VMungo0540G1109 Vigna mungo HOM05D004535 ORTHO05D005341 1.1e-113 416.4 322 63.0
Ca_14860_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 2.5e-113 415.2 339 64.0
MD00G1206600 Malus domestica HOM05D004535 ORTHO05D005341 2.3e-106 392.1 231 77.1
Actinidia00827 Actinidia chinensis HOM05D004535 ORTHO05D005341 1.6e-104 386.0 300 65.0
VMungo1127G2045 Vigna mungo HOM05D004535 ORTHO05D005341 1.9e-100 372.5 322 60.6
MD00G1206500 Malus domestica HOM05D004535 ORTHO05D005341 4.3e-97 361.3 246 75.6
PRCOL_00006556 Prasinoderma coloniale HOM05D004535 ORTHO05D005341 5.8e-86 324.3 1681 23.4
SEGI_32129 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 9.3e-84 317.0 358 52.2
Actinidia03668 Actinidia chinensis HOM05D004535 ORTHO05D005341 2.2e-80 305.8 240 62.1
Nn1g08306 Nelumbo nucifera HOM05D004535 ORTHO05D005341 1.4e-74 286.6 167 80.8
arahy.Tifrunner.gnm1.ann1.P6R29M Arachis hypogaea HOM05D004535 ORTHO05D005341 2.4e-71 275.8 348 45.7
Cpa.g.sc12.82 Carica papaya HOM05D004535 ORTHO05D005341 3.5e-38 165.6 100 81.0
SEGI_15666 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 1.0e-37 164.1 138 63.0
Cfa027001 Carpinus fangiana HOM05D004535 ORTHO05D005341 3.3e-36 159.1 1751 20.3
Actinidia00828 Actinidia chinensis HOM05D004535 ORTHO05D005341 2.9e-32 146.0 210 42.9
Cre14.g628702 Chlamydomonas reinhardtii HOM05D004535 ORTHO05D005341 1.7e-24 120.2 648 23.6
arahy.Tifrunner.gnm1.ann1.A7P7U5 Arachis hypogaea HOM05D004535 ORTHO05D005341 1.9e-23 116.7 124 53.2
arahy.Tifrunner.gnm1.ann1.QBA8JR Arachis hypogaea HOM05D004535 ORTHO05D005341 2.5e-20 106.3 163 39.9
PSO541G1144 Papaver somniferum HOM05D004535 ORTHO05D005341 2.5e-20 106.3 74 66.2
Lsat_1_v5_gn_0_5420 Lactuca sativa HOM05D004535 ORTHO05D005341 3.3e-20 105.9 74 62.2
arahy.Tifrunner.gnm1.ann1.6S2B7N Arachis hypogaea HOM05D012221 ORTHO05D005341 5.6e-20 105.1 113 53.1
Psat5g106440 Pisum sativum HOM05D004535 ORTHO05D005341 4.7e-19 102.1 65 75.4
Ca_31034_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 1.2e-17 97.4 75 65.3
arahy.Tifrunner.gnm1.ann1.EHT35G Arachis hypogaea HOM05D004535 ORTHO05D005341 5.8e-17 95.1 108 50.0
SEGI_18126 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 4.1e-15 89.0 73 52.1
PGSC0003DMG402022150 Solanum tuberosum HOM05D004535 ORTHO05D005341 1.0e-13 84.3 96 45.8
arahy.Tifrunner.gnm1.ann1.HQ6FCP Arachis hypogaea HOM05D004535 ORTHO05D005341 1.5e-12 80.5 166 34.3
VMungo1215G1327 Vigna mungo HOM05D004535 ORTHO05D005341 7.3e-12 78.2 67 61.2
Psat4g112520 Pisum sativum HOM05D004535 ORTHO05D005341 6.2e-11 75.1 44 79.5
CSS0045016 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000018 4.4e-09 68.9 73 52.1
VMungo0110G0001 Vigna mungo HOM05D004535 ORTHO05D005341 1.3e-08 67.4 63 46.0


User provided reference genes

Program Settings