Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy4G02274 Aquilegia oxysepala HOM05D003788 ORTHO05D004633 0.0e+00 2817.0 1436 100.0
TAR629G3040 Trochodendron aralioides HOM05D003788 ORTHO05D004633 5.0e-205 719.5 1508 38.5
TAR626G0610 Trochodendron aralioides HOM05D003788 ORTHO05D004633 2.3e-194 684.1 1512 36.5
TAR627G0146 Trochodendron aralioides HOM05D003788 ORTHO05D004633 5.7e-169 599.7 1333 37.8
Dinv40920 Davidia involucrata HOM05D003788 ORTHO05D004633 3.2e-119 434.5 1536 31.4
Dinv19640 Davidia involucrata HOM05D003788 ORTHO05D004633 7.9e-118 429.9 1523 31.1
Manes.05G204500 Manihot esculenta HOM05D003788 ORTHO05D004633 1.9e-116 425.2 1530 31.0
Potri.001G472400 Populus trichocarpa HOM05D003788 ORTHO05D004633 1.3e-115 422.5 1562 29.8
PSO782G4685 Papaver somniferum HOM05D003788 ORTHO05D004633 2.8e-115 421.4 1451 31.6
Nn1g07620 Nelumbo nucifera HOM05D003788 ORTHO05D004633 1.7e-112 412.1 1114 34.0
QL08p000460 Quercus lobata HOM05D003788 ORTHO05D004633 2.4e-111 408.3 1542 30.1
Ciclev10007254m.g Citrus clementina HOM05D003788 ORTHO05D004633 4.6e-110 404.1 1507 29.3
Potri.011G169100 Populus trichocarpa HOM05D003788 ORTHO05D004633 4.6e-110 404.1 1577 29.3
Sabra11G0137700 Salix brachista HOM05D003788 ORTHO05D004633 4.6e-110 404.1 1592 29.8
Cfa016964 Carpinus fangiana HOM05D003788 ORTHO05D004633 1.0e-109 402.9 1531 30.8
Prupe.6G035800 Prunus persica HOM05D003788 ORTHO05D004633 2.5e-108 398.3 1523 29.6
MBI15_g35998_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 9.6e-108 396.4 1470 30.5
Sabra16G0320700 Salix brachista HOM05D003788 ORTHO05D004633 9.6e-108 396.4 1564 29.5
Haze_09919 Corylus avellana HOM05D003788 ORTHO05D004633 3.7e-107 394.4 1482 29.6
Atru.chr2.3902 Acer truncatum HOM05D003788 ORTHO05D004633 2.6e-105 388.3 1545 29.8
Thecc.07G001100 Theobroma cacao HOM05D003788 ORTHO05D004633 4.5e-105 387.5 1536 29.0
Gorai.013G147700 Gossypium raimondii HOM05D003788 ORTHO05D004633 1.7e-104 385.6 1544 29.2
Gohir.D13G131700 Gossypium hirsutum HOM05D003788 ORTHO05D004633 8.4e-104 383.3 1543 29.1
CSS0022631 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 9.3e-103 379.8 1506 29.8
Gohir.A13G128300 Gossypium hirsutum HOM05D003788 ORTHO05D004633 3.9e-101 374.4 1545 28.6
Duzib213G0477 Durio zibethinus HOM05D003788 ORTHO05D004633 1.8e-98 365.5 1495 28.6
CiPaw.11G210900 Carya illinoinensis HOM05D003788 ORTHO05D004633 4.5e-97 360.9 1540 29.9
Duzib268G1743 Durio zibethinus HOM05D003788 ORTHO05D004633 2.5e-95 355.1 1536 28.6
RcHm_v2.0_Chr5g0074531 Rosa chinensis HOM05D003788 ORTHO05D004633 3.2e-95 354.8 1528 28.9
MD03G1043400 Malus domestica HOM05D003788 ORTHO05D004633 1.8e-93 349.0 1522 28.5
MBI14_g10253_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 3.0e-93 348.2 650 38.9
MD11G1046500 Malus domestica HOM05D003788 ORTHO05D004633 1.8e-90 339.0 1522 28.9
COL.COLO4_07793 Corchorus olitorius HOM05D003788 ORTHO05D004633 3.4e-89 334.7 1513 28.3
FAN11G0056 Fragaria x ananassa HOM05D003788 ORTHO05D004633 3.8e-88 331.3 1551 28.0
FvH4_3g41530 Fragaria vesca HOM05D003788 ORTHO05D004633 3.6e-86 324.7 1552 27.8
CSS0001498 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 2.3e-85 322.0 1446 28.8
CSS0046183 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 2.3e-85 322.0 1446 28.8
FAN16G1134 Fragaria x ananassa HOM05D003788 ORTHO05D004633 3.9e-85 321.2 1561 27.3
Oeu052883.2 Olea europaea HOM05D003788 ORTHO05D004633 1.5e-84 319.3 1534 27.6
Manes.01G007100 Manihot esculenta HOM05D003788 ORTHO05D004633 2.6e-84 318.5 1337 30.2
GSVIVG01014849001 Vitis vinifera HOM05D003788 ORTHO05D004633 9.1e-82 310.1 1187 29.5
FAN21G2445 Fragaria x ananassa HOM05D003788 ORTHO05D004633 2.6e-81 308.5 1543 27.6
FAN25G3203 Fragaria x ananassa HOM05D003788 ORTHO05D004633 1.1e-79 303.1 1549 27.6
Eucgr.F01984 Eucalyptus grandis HOM05D003788 ORTHO05D004633 1.4e-79 302.8 1400 28.9
CiPaw.12G143000 Carya illinoinensis HOM05D003788 ORTHO05D004633 2.7e-78 298.5 1273 28.7
Oeu015274.1 Olea europaea HOM05D003788 ORTHO05D004633 3.6e-78 298.1 1380 28.1
Nitab4.5_0001732g0050 Nicotiana tabacum HOM05D003788 ORTHO05D004633 1.0e-77 296.6 1494 26.5
ClCG10G003840 Citrullus lanatus HOM05D003788 ORTHO05D004633 1.1e-76 293.1 1486 28.2
Actinidia31533 Actinidia chinensis HOM05D003788 ORTHO05D004633 4.4e-76 291.2 1382 28.2
ClCG10G003960 Citrullus lanatus HOM05D003788 ORTHO05D004633 4.4e-76 291.2 1486 28.1
Rhsim06G0235500 Rhododendron simsii HOM05D003788 ORTHO05D004633 2.8e-75 288.5 1273 29.2
TWI38G0822 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 2.8e-75 288.5 1221 29.6
vmacro11644 Vaccinium macrocarpon HOM05D003788 ORTHO05D004633 7.0e-74 283.9 1401 27.3
Duzib170G0482 Durio zibethinus HOM05D003788 ORTHO05D004633 1.6e-73 282.7 1531 26.6
TWI39G0992 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 5.0e-72 277.7 1444 27.9
MELO3C014063.2 Cucumis melo HOM05D003788 ORTHO05D004633 1.5e-71 276.2 1521 27.5
Nitab4.5_0000152g0020 Nicotiana tabacum HOM05D003788 ORTHO05D004633 3.2e-71 275.0 1504 26.9
PGR031G1033 Punica granatum HOM05D003788 ORTHO05D004633 2.7e-70 271.9 1486 27.3
ClCG00G001230 Citrullus lanatus HOM05D003788 ORTHO05D004633 3.6e-70 271.6 1258 29.4
Gorai.004G034500 Gossypium raimondii HOM05D003788 ORTHO05D004633 3.0e-69 268.5 1398 27.8
Gohir.D08G036500 Gossypium hirsutum HOM05D003788 ORTHO05D004633 1.2e-68 266.5 1399 27.4
Peaxi162Scf00232g00078 Petunia axillaris HOM05D003788 ORTHO05D004633 1.3e-67 263.1 1438 26.8
CsaV3_3G003820 Cucumis sativus L. HOM05D003788 ORTHO05D004633 1.7e-67 262.7 1522 27.4
Gohir.A08G026000 Gossypium hirsutum HOM05D003788 ORTHO05D004633 2.8e-67 261.9 1389 27.7
Cc05_g15760 Coffea canephora HOM05D003788 ORTHO05D004633 1.6e-65 256.1 516 38.0
Sopen07g034380 Solanum pennellii HOM05D003788 ORTHO05D004633 1.7e-64 252.7 1408 27.6
CANSAT11G0655 Cannabis sativa HOM05D003788 ORTHO05D004633 2.2e-64 252.3 1556 27.5
Sed0020897 Sechium edule HOM05D003788 ORTHO05D004633 2.5e-63 248.8 1238 28.8
PGSC0003DMG400022144 Solanum tuberosum HOM05D003788 ORTHO05D004633 2.5e-63 248.8 1425 26.8
DCAR_013754 Daucus carota HOM05D003788 ORTHO05D004633 1.2e-62 246.5 1539 26.1
TWI14G1222 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 2.7e-62 245.4 562 39.0
Solyc07g066200.4 Solanum lycopersicum HOM05D003788 ORTHO05D004633 3.6e-62 245.0 1381 26.9
Sed0023936 Sechium edule HOM05D003788 ORTHO05D004633 1.5e-60 239.6 1495 26.8
SalBow8G5584 Salvia bowleyana HOM05D003788 ORTHO05D004633 2.6e-60 238.8 1425 27.2
MSTRG.16130 Avicennia marina HOM05D003788 ORTHO05D004633 7.5e-60 237.3 1443 27.2
MSTRG.7044 Avicennia marina HOM05D003788 ORTHO05D004633 9.8e-60 236.9 1410 27.5
Sc03g0011790 Simmondsia chinensis HOM05D003788 ORTHO05D004633 8.3e-59 233.8 779 30.4
ATR0751G208 Amborella trichopoda HOM05D003788 ORTHO05D004633 2.7e-57 228.8 711 30.5
Lj8C184G1 Lonicera japonica HOM05D003788 ORTHO05D004633 4.5e-57 228.0 1172 28.2
Lj1A901G37 Lonicera japonica HOM05D003788 ORTHO05D004633 1.7e-56 226.1 1178 27.8
Os04g0471400 Oryza sativa ssp. japonica HOM05D003788 ORTHO05D004633 1.0e-53 216.9 1508 25.0
Zm00001eb079970 Zea mays HOM05D003788 ORTHO05D004633 2.3e-53 215.7 639 32.1
HPP92_022807 Vanilla planifolia HOM05D003788 ORTHO05D004633 2.6e-52 212.2 516 34.3
THA.LOC104810306 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 4.4e-52 211.5 452 36.9
Zm00001eb424700 Zea mays HOM05D003788 ORTHO05D004633 4.4e-52 211.5 749 30.3
Lsat_1_v5_gn_7_115701 Lactuca sativa HOM05D003788 ORTHO05D004633 8.3e-51 207.2 554 32.3
Migut.M01579 Erythranthe guttata HOM05D003788 ORTHO05D004633 4.5e-49 201.4 769 30.4
AUR62035659 Chenopodium quinoa HOM05D003788 ORTHO05D004633 2.9e-48 198.7 1154 26.9
Hma1.2p1_0321F.1_g124360 Hydrangea macrophylla HOM05D003788 ORTHO05D004633 3.8e-48 198.4 437 35.9
AUR62017148 Chenopodium quinoa HOM05D003788 ORTHO05D004633 5.0e-48 198.0 1246 26.3
Actinidia30346 Actinidia chinensis HOM05D003788 ORTHO05D004633 3.6e-46 191.8 497 37.4
CDE11G0275 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 4.7e-46 191.4 521 33.2
THA.LOC104822683 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 4.7e-46 191.4 1151 25.4
HPP92_015789 Vanilla planifolia HOM05D003788 ORTHO05D004633 2.3e-45 189.1 506 34.8
EL10Ac4g07522 Beta vulgaris HOM05D003788 ORTHO05D004633 5.7e-44 184.5 1196 25.3
Ah.04g166650 Amaranthus hybridus HOM05D003788 ORTHO05D004633 1.3e-43 183.3 414 35.3
ECA236G3073 Erigeron canadensis HOM05D003788 ORTHO05D004633 1.3e-43 183.3 508 33.9
HanXRQChr17g0546861 Helianthus annuus HOM05D003788 ORTHO05D004633 2.2e-43 182.6 506 32.8
Hund23029 Selenicereus undatus HOM05D003788 ORTHO05D004633 7.0e-42 177.6 1193 25.8
unitig_46.g18528 Utricularia gibba HOM05D003788 ORTHO05D004633 9.2e-42 177.2 476 34.9
MBI14_g12743_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 5.9e-41 174.5 343 39.9
HanXRQChr03g0079411 Helianthus annuus HOM05D003788 ORTHO05D004633 1.7e-40 172.9 458 32.8
HanXRQChr11g0346921 Helianthus annuus HOM05D003788 ORTHO05D004633 3.3e-39 168.7 508 32.7
MSTRG.13048 Avicennia marina HOM05D003788 ORTHO05D004633 1.6e-38 166.4 1238 25.1
CDE06G0258 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 5.2e-37 161.4 299 36.8
Migut.H01707 Erythranthe guttata HOM05D003788 ORTHO05D004633 4.4e-36 158.3 473 31.1
THA.LOC104811704 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 9.8e-36 157.1 496 33.1
Aa31LG3G12140 Aethionema arabicum HOM05D003788 ORTHO05D004633 2.2e-35 156.0 421 33.7
Thhalv10012573m.g Eutrema salsugineum HOM05D003788 ORTHO05D004633 2.9e-35 155.6 355 36.9
unitig_37.g12213 Utricularia gibba HOM05D003788 ORTHO05D004633 3.2e-34 152.1 415 33.0
Cpa.g.sc12.61 Carica papaya HOM05D003788 ORTHO05D004633 2.7e-33 149.1 508 32.5
SGA_v2.0_scaffold11G05962 Striga asiatica HOM05D003788 ORTHO05D004633 4.6e-33 148.3 490 30.4
BcaC01g06410 Brassica carinata HOM05D003788 ORTHO05D004633 1.3e-32 146.7 365 33.2
BolC3t14026H Brassica oleracea HOM05D003788 ORTHO05D004633 1.3e-32 146.7 365 33.4
A03p13630 Brassica napus HOM05D003788 ORTHO05D004633 3.0e-32 145.6 367 33.2
A02p09250 Brassica napus HOM05D003788 ORTHO05D004633 8.6e-32 144.1 477 30.2
ECA240G4117 Erigeron canadensis HOM05D003788 ORTHO05D004633 8.6e-32 144.1 591 29.8
AL8G31870 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 1.5e-31 143.3 463 32.0
BraA03t10667Z Brassica rapa HOM05D003788 ORTHO05D004633 1.9e-31 142.9 367 32.7
Sp6g18100 Schrenkiella parvula HOM05D003788 ORTHO05D004633 2.5e-31 142.5 399 34.3
AL191U10030 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 3.3e-31 142.1 440 32.3
CARHR269640 Cardamine hirsuta HOM05D003788 ORTHO05D004633 5.6e-31 141.4 388 32.2
unitig_0.g982 Utricularia gibba HOM05D003788 ORTHO05D004633 7.3e-31 141.0 449 31.2
Thhalv10012702m.g Eutrema salsugineum HOM05D003788 ORTHO05D004633 9.5e-31 140.6 507 30.0
C03p15980 Brassica napus HOM05D003788 ORTHO05D004633 1.2e-30 140.2 424 31.8
Carub.0008s1656 Capsella rubella HOM05D003788 ORTHO05D004633 1.2e-30 140.2 479 30.3
Carub.0008s1657 Capsella rubella HOM05D003788 ORTHO05D004633 2.1e-30 139.4 392 33.9
CARHR269650 Cardamine hirsuta HOM05D003788 ORTHO05D004633 2.1e-30 139.4 409 31.3
BcaB01g04387 Brassica carinata HOM05D003788 ORTHO05D004633 3.6e-30 138.7 397 32.7
Lsat_1_v5_gn_9_88661 Lactuca sativa HOM05D003788 ORTHO05D004633 3.6e-30 138.7 458 29.0
AL8G31880 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 8.9e-29 134.0 448 31.7
C09p47480 Brassica napus HOM05D003788 ORTHO05D004633 8.9e-29 134.0 406 31.0
C09p47500 Brassica napus HOM05D003788 ORTHO05D004633 8.9e-29 134.0 405 31.6
AT5G56240 Arabidopsis thaliana HOM05D003788 ORTHO05D004633 1.5e-28 133.3 432 34.0
BcaB05g22252 Brassica carinata HOM05D003788 ORTHO05D004633 1.5e-28 133.3 468 30.3
AT5G56250 Arabidopsis thaliana HOM05D003788 ORTHO05D004633 2.0e-28 132.9 426 33.1
BcaC03g14234 Brassica carinata HOM05D003788 ORTHO05D004633 4.4e-28 131.7 389 31.6
C02p15400 Brassica napus HOM05D003788 ORTHO05D004633 4.4e-28 131.7 389 31.6
BolC2t07655H Brassica oleracea HOM05D003788 ORTHO05D004633 4.4e-28 131.7 389 31.6
BcaC04g20117 Brassica carinata HOM05D003788 ORTHO05D004633 7.5e-28 131.0 406 30.8
BolC9t57603H Brassica oleracea HOM05D003788 ORTHO05D004633 7.5e-28 131.0 406 30.8
A10p13490 Brassica napus HOM05D003788 ORTHO05D004633 1.3e-27 130.2 358 31.6
BraA10t43453Z Brassica rapa HOM05D003788 ORTHO05D004633 1.3e-27 130.2 358 31.6
SGA_v2.0_scaffold7G03552 Striga asiatica HOM05D003788 ORTHO05D004633 1.9e-26 126.3 456 30.0
BcaB01g04386 Brassica carinata HOM05D003788 ORTHO05D004633 7.1e-26 124.4 376 31.1
BolC3t14027H Brassica oleracea HOM05D003788 ORTHO05D004633 7.1e-26 124.4 411 30.2
BcaC01g06409 Brassica carinata HOM05D003788 ORTHO05D004633 2.1e-25 122.9 411 29.9
C03p15990 Brassica napus HOM05D003788 ORTHO05D004633 2.3e-24 119.4 411 30.7
CDE05G2211 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 5.1e-24 118.2 536 26.5
C02p15420 Brassica napus HOM05D003788 ORTHO05D004633 2.5e-23 115.9 514 28.2
BolC2t07656H Brassica oleracea HOM05D003788 ORTHO05D004633 2.5e-23 115.9 514 28.2
BcaC03g14236 Brassica carinata HOM05D003788 ORTHO05D004633 4.3e-23 115.2 517 28.4
BraA02t05991Z Brassica rapa HOM05D003788 ORTHO05D004633 3.6e-22 112.1 376 29.3
A02p09290 Brassica napus HOM05D003788 ORTHO05D004633 2.3e-21 109.4 376 29.0
BraA03t10668Z Brassica rapa HOM05D003788 ORTHO05D004633 3.1e-21 109.0 503 25.0
Sp6g18090 Schrenkiella parvula HOM05D003788 ORTHO05D004633 1.2e-20 107.1 278 34.2
BcaC04g20115 Brassica carinata HOM05D003788 ORTHO05D004633 2.0e-20 106.3 226 36.3
BolC9t57606H Brassica oleracea HOM05D003788 ORTHO05D004633 2.0e-20 106.3 226 36.3
BcaB05g22251 Brassica carinata HOM05D003788 ORTHO05D004633 4.4e-20 105.1 508 27.6
A03p13640 Brassica napus HOM05D003788 ORTHO05D004633 2.4e-18 99.4 520 24.0
Actinidia30347 Actinidia chinensis HOM05D003788 ORTHO05D004633 5.4e-18 98.2 858 23.7
HPP92_007487 Vanilla planifolia HOM05D003788 ORTHO05D004633 8.6e-16 90.9 176 36.9
Cc05_g15750 Coffea canephora HOM05D003788 ORTHO05D004633 2.4e-13 82.8 554 24.2
SEGI_04749 Sequoiadendron giganteum HOM05D003788 ORTHO05D004633 3.1e-13 82.4 93 51.6
A10p13510 Brassica napus HOM05D003788 ORTHO05D004633 1.5e-12 80.1 180 36.1
CARHR218680 Cardamine hirsuta HOM05D003788 ORTHO05D004633 9.9e-12 77.4 230 30.9
CDE03G0301 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 6.4e-11 74.7 195 30.8
Nn1g09760 Nelumbo nucifera HOM05D003788 ORTHO05D010879 3.9e-08 65.5 279 28.0
PSO675G9246 Papaver somniferum HOM05D061670 ORTHO05D010879 5.1e-08 65.1 94 37.2
PSO017G0918 Papaver somniferum HOM05D061670 ORTHO05D010879 3.3e-07 62.4 94 36.2
SEGI_40378 Sequoiadendron giganteum HOM05D021706 ORTHO05D018121 1.6e-06 60.1 116 37.9
BraA02t05990Z Brassica rapa HOM05D003788 ORTHO05D004633 2.1e-06 59.7 49 55.1
SEGI_38675 Sequoiadendron giganteum HOM05D021706 ORTHO05D018121 2.8e-06 59.3 66 47.0
SEGI_04996 Sequoiadendron giganteum HOM05D021706 ORTHO05D018121 6.2e-06 58.2 127 32.3
SEGI_14105 Sequoiadendron giganteum HOM05D021706 ORTHO05D018121 6.2e-06 58.2 127 32.3
Aqoxy2G04009 Aquilegia oxysepala HOM05D003788 ORTHO05D010879 8.1e-06 57.8 272 25.0
SEGI_32539 Sequoiadendron giganteum HOM05D021706 ORTHO05D018121 8.1e-06 57.8 66 45.5


User provided reference genes

Program Settings