Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy4G02236 Aquilegia oxysepala HOM05D004683 ORTHO05D005388 9.3e-218 760.0 404 100.0
Nn1g07478 Nelumbo nucifera HOM05D004683 ORTHO05D005388 7.6e-119 431.4 422 64.2
TAR626G1909 Trochodendron aralioides HOM05D004683 ORTHO05D005388 2.3e-115 419.9 419 62.1
PSO541G4951 Papaver somniferum HOM05D004683 ORTHO05D005388 1.1e-104 384.4 436 57.1
PSO675G6369 Papaver somniferum HOM05D004683 ORTHO05D005388 2.4e-104 383.3 436 56.9
MBI19_g44082_MAGBIO Magnolia biondii HOM05D004683 ORTHO05D005388 2.6e-103 379.8 423 57.9
GSVIVG01007216001 Vitis vinifera HOM05D004683 ORTHO05D005388 3.3e-98 362.8 338 62.7
CSS0016540 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.3e-97 360.9 403 56.6
Dinv04407 Davidia involucrata HOM05D004683 ORTHO05D005388 2.2e-97 360.1 352 62.5
Actinidia11898 Actinidia chinensis HOM05D004683 ORTHO05D005388 3.1e-96 356.3 414 56.0
Actinidia39280 Actinidia chinensis HOM05D004683 ORTHO05D005388 1.2e-95 354.4 416 55.8
Prupe.4G006700 Prunus persica HOM05D004683 ORTHO05D005388 2.3e-91 340.1 419 55.1
Sed0018998 Sechium edule HOM05D004683 ORTHO05D005388 2.3e-91 340.1 414 54.1
Duzib160G0680 Durio zibethinus HOM05D004683 ORTHO05D005388 3.0e-91 339.7 415 54.2
ClCG01G010700 Citrullus lanatus HOM05D004683 ORTHO05D005388 5.1e-91 339.0 406 55.2
MD10G1336700 Malus domestica HOM05D004683 ORTHO05D005388 4.3e-90 335.9 421 53.9
CsaV3_UNG061480 Cucumis sativus L. HOM05D004683 ORTHO05D005388 9.7e-90 334.7 414 54.1
RcHm_v2.0_Chr5g0000761 Rosa chinensis HOM05D004683 ORTHO05D005388 1.3e-89 334.3 413 53.5
MELO3C025532.2 Cucumis melo HOM05D004683 ORTHO05D005388 1.7e-89 334.0 416 53.8
Potri.006G017200 Populus trichocarpa HOM05D004683 ORTHO05D005388 4.8e-89 332.4 419 53.7
Sabra06G0012200 Salix brachista HOM05D004683 ORTHO05D005388 4.8e-89 332.4 419 54.9
Lj2A259T33 Lonicera japonica HOM05D004683 ORTHO05D005388 1.5e-87 327.4 419 53.7
Duzib235G0361 Durio zibethinus HOM05D004683 ORTHO05D005388 5.9e-87 325.5 412 53.9
PGR004G0928 Punica granatum HOM05D004683 ORTHO05D005388 1.3e-86 324.3 424 50.7
Cfa000066 Carpinus fangiana HOM05D004683 ORTHO05D005388 8.5e-86 321.6 415 53.0
Manes.09G081701 Manihot esculenta HOM05D004683 ORTHO05D005388 1.9e-85 320.5 425 53.4
FvH4_3g00551 Fragaria vesca HOM05D004683 ORTHO05D005388 2.5e-85 320.1 414 51.2
CSS0018655 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 3.2e-85 319.7 409 51.6
CsaV3_1G015800 Cucumis sativus L. HOM05D004683 ORTHO05D005388 3.2e-85 319.7 344 59.6
Potri.016G008400 Populus trichocarpa HOM05D004683 ORTHO05D005388 1.6e-84 317.4 424 52.8
FAN25G2373 Fragaria x ananassa HOM05D004683 ORTHO05D005388 3.6e-84 316.2 410 50.7
Solyc11g012610.2 Solanum lycopersicum HOM05D004683 ORTHO05D005388 3.0e-83 313.2 395 51.4
PGSC0003DMG400013358 Solanum tuberosum HOM05D004683 ORTHO05D005388 8.8e-83 311.6 397 51.1
Gohir.D10G008100 Gossypium hirsutum HOM05D004683 ORTHO05D005388 3.3e-82 309.7 355 56.3
THA.LOC104806735 Tarenaya hassleriana HOM05D004683 ORTHO05D005388 5.7e-82 308.9 412 51.9
Gohir.A10G008300 Gossypium hirsutum HOM05D004683 ORTHO05D005388 7.4e-82 308.5 345 56.8
Gorai.011G008800 Gossypium raimondii HOM05D004683 ORTHO05D005388 9.7e-82 308.1 355 56.1
Nitab4.5_0001668g0040 Nicotiana tabacum HOM05D004683 ORTHO05D005388 9.7e-82 308.1 384 52.6
COL.COLO4_15259 Corchorus olitorius HOM05D004683 ORTHO05D005388 2.2e-81 307.0 415 51.6
CiPaw.09G105900 Carya illinoinensis HOM05D004683 ORTHO05D005388 2.8e-81 306.6 420 52.1
Peaxi162Scf00352g01036 Petunia axillaris HOM05D004683 ORTHO05D005388 1.8e-80 303.9 378 51.9
CANSAT56G4109 Cannabis sativa HOM05D004683 ORTHO05D005388 2.4e-80 303.5 422 49.1
CAN.G696.10 Capsicum annuum HOM05D004683 ORTHO05D005388 4.1e-80 302.8 396 50.0
Atru.chr1.2335 Acer truncatum HOM05D004683 ORTHO05D005388 9.1e-80 301.6 415 50.8
Hma1.2p1_0657F.1_g196900 Hydrangea macrophylla HOM05D004683 ORTHO05D005388 2.0e-79 300.4 417 51.3
MD00G1058000 Malus domestica HOM05D004683 ORTHO05D005388 2.0e-79 300.4 418 50.7
Lj6g0001835 Lotus japonicus HOM05D004683 ORTHO05D005388 3.4e-79 299.7 402 51.7
Thecc.06G237400 Theobroma cacao HOM05D004683 ORTHO05D005388 7.7e-79 298.5 410 50.2
CDE04G2289 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 1.7e-78 297.4 322 56.2
Peaxi162Scf01544g00025 Petunia axillaris HOM05D004683 ORTHO05D005388 5.0e-78 295.8 327 55.7
Cc09_g00590 Coffea canephora HOM05D004683 ORTHO05D005388 6.5e-78 295.4 344 54.7
TWI38G0781 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 6.5e-78 295.4 419 49.4
Gorai.010G188900 Gossypium raimondii HOM05D004683 ORTHO05D005388 2.5e-77 293.5 344 56.1
Phvul.006G141000 Phaseolus vulgaris HOM05D004683 ORTHO05D005388 3.2e-77 293.1 408 50.2
Eucgr.D01443 Eucalyptus grandis HOM05D004683 ORTHO05D005388 9.4e-77 291.6 411 49.6
CSS0042800 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.2e-76 291.2 326 57.7
Gohir.A06G155500 Gossypium hirsutum HOM05D004683 ORTHO05D005388 4.7e-76 289.3 344 55.2
ATR0624G003 Amborella trichopoda HOM05D004683 ORTHO05D005388 2.3e-75 287.0 347 53.0
Lsat_1_v5_gn_7_14120 Lactuca sativa HOM05D004683 ORTHO05D005388 3.9e-75 286.2 412 50.7
Gohir.D06G161900 Gossypium hirsutum HOM05D004683 ORTHO05D005388 8.8e-75 285.0 404 50.2
Oeu052851.1 Olea europaea HOM05D004683 ORTHO05D005388 7.4e-74 282.0 327 56.6
Sabra16G0012800 Salix brachista HOM05D004683 ORTHO05D005388 1.3e-73 281.2 442 49.5
TAR341G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 1.7e-73 280.8 280 66.1
TAR485G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 1.7e-73 280.8 280 66.1
PGSC0003DMG400023555 Solanum tuberosum HOM05D004683 ORTHO05D005388 8.2e-73 278.5 332 52.1
DCAR_030854 Daucus carota HOM05D004683 ORTHO05D005388 1.6e-71 274.2 415 48.7
TWI63G0041 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 2.2e-70 270.4 411 48.2
CDE06G0298 Ceratophyllum demersum HOM05D000165 ORTHO05D005388 2.9e-70 270.0 291 57.4
Oeu052866.1 Olea europaea HOM05D004683 ORTHO05D005388 6.5e-70 268.9 351 53.3
QL05p068304 Quercus lobata HOM05D004683 ORTHO05D005388 6.5e-70 268.9 420 47.1
SalBow8G0627 Salvia bowleyana HOM05D004683 ORTHO05D005388 1.9e-69 267.3 444 46.8
Lalb_Chr15g0088101 Lupinus albus HOM05D004683 ORTHO05D005388 2.5e-69 266.9 416 47.1
Rhsim02G0091200 Rhododendron simsii HOM05D004683 ORTHO05D005388 1.2e-68 264.6 409 47.9
QL05p068796 Quercus lobata HOM05D004683 ORTHO05D005388 3.6e-68 263.1 414 45.4
Sc05g0009730 Simmondsia chinensis HOM05D004683 ORTHO05D005388 4.7e-68 262.7 378 49.5
Medtr2g026550 Medicago truncatula HOM05D004683 ORTHO05D005388 1.4e-67 261.2 390 49.7
AUR62012829 Chenopodium quinoa HOM05D004683 ORTHO05D005388 1.8e-67 260.8 413 45.8
AUR62021828 Chenopodium quinoa HOM05D004683 ORTHO05D005388 2.6e-66 256.9 414 45.7
Haze_06980 Corylus avellana HOM05D004683 ORTHO05D005388 2.6e-66 256.9 406 47.8
Oeu030103.1 Olea europaea HOM05D004683 ORTHO05D005388 2.6e-66 256.9 364 47.0
HanXRQChr15g0470281 Helianthus annuus HOM05D004683 ORTHO05D005388 9.7e-66 255.0 358 50.8
Lsat_1_v5_gn_0_24381 Lactuca sativa HOM05D004683 ORTHO05D005388 2.8e-65 253.4 375 49.1
Hund21139 Selenicereus undatus HOM05D004683 ORTHO05D005388 3.7e-65 253.1 420 45.2
SGA_v2.0_scaffold7G03714 Striga asiatica HOM05D004683 ORTHO05D005388 7.0e-64 248.8 409 46.2
arahy.Tifrunner.gnm1.ann1.5M71YA Arachis hypogaea HOM05D004683 ORTHO05D005388 1.2e-63 248.1 415 44.1
Nitab4.5_0004646g0030 Nicotiana tabacum HOM05D004683 ORTHO05D005388 1.2e-63 248.1 416 45.2
arahy.Tifrunner.gnm1.ann1.L4TARN Arachis hypogaea HOM05D004683 ORTHO05D005388 2.0e-63 247.3 415 44.1
Ah.14g087460 Amaranthus hybridus HOM05D004683 ORTHO05D005388 3.5e-63 246.5 421 44.9
TPR.G10575 Trifolium pratense HOM05D004683 ORTHO05D005388 8.5e-62 241.9 396 44.2
Aa31LG6G60 Aethionema arabicum HOM05D004683 ORTHO05D005388 1.1e-61 241.5 434 43.8
vmacro15736 Vaccinium macrocarpon HOM05D004683 ORTHO05D005388 1.1e-61 241.5 417 45.8
EL10Ac8g20240 Beta vulgaris HOM05D004683 ORTHO05D005388 7.2e-61 238.8 402 44.3
Solyc04g014850.3 Solanum lycopersicum HOM05D004683 ORTHO05D005388 3.6e-60 236.5 332 47.3
Psat1g173720 Pisum sativum HOM05D004683 ORTHO05D005388 6.1e-60 235.7 384 45.1
Carub.0007s2417 Capsella rubella HOM05D004683 ORTHO05D005388 2.3e-59 233.8 394 45.7
AT4G17240 Arabidopsis thaliana HOM05D004683 ORTHO05D005388 6.8e-59 232.3 376 46.8
AL7G37470 Arabidopsis lyrata HOM05D004683 ORTHO05D005388 8.8e-59 231.9 372 46.2
CARHR223850 Cardamine hirsuta HOM05D004683 ORTHO05D005388 8.8e-59 231.9 375 46.9
Glyma.15G117000 Glycine max HOM05D004683 ORTHO05D005388 2.6e-58 230.3 412 43.4
Sopen04g006980 Solanum pennellii HOM05D004683 ORTHO05D005388 4.4e-58 229.6 412 42.2
Cpa.g.sc27.252 Carica papaya HOM05D004683 ORTHO05D005388 1.3e-57 228.0 311 53.4
Migut.M01430 Erythranthe guttata HOM05D004683 ORTHO05D005388 1.7e-57 227.6 419 43.0
HPP92_014031 Vanilla planifolia HOM05D004683 ORTHO05D005388 2.4e-56 223.8 414 43.7
Thhalv10025641m.g Eutrema salsugineum HOM05D004683 ORTHO05D005388 3.1e-56 223.4 376 45.7
Glyma.09G012400 Glycine max HOM05D004683 ORTHO05D005388 3.1e-56 223.4 408 43.1
Ca_00746_v3 Cicer arietinum L. HOM05D004683 ORTHO05D005388 7.0e-56 222.2 297 48.5
BolC1t02477H Brassica oleracea HOM05D004683 ORTHO05D005388 1.2e-55 221.5 395 44.3
Sabra16G0012500 Salix brachista HOM05D004683 ORTHO05D005388 4.5e-55 219.5 282 56.0
BcaC09g50454 Brassica carinata HOM05D004683 ORTHO05D005388 7.7e-55 218.8 395 43.8
C01p25270 Brassica napus HOM05D004683 ORTHO05D005388 7.7e-55 218.8 395 43.8
A01p20140 Brassica napus HOM05D004683 ORTHO05D005388 1.7e-54 217.6 380 44.7
BraA01t01938Z Brassica rapa HOM05D004683 ORTHO05D005388 2.9e-54 216.9 348 46.0
VMungo0540G0168 Vigna mungo HOM05D004683 ORTHO05D005388 5.0e-54 216.1 408 43.1
Sp7g16950 Schrenkiella parvula HOM05D004683 ORTHO05D005388 5.5e-53 212.6 377 43.5
Ciclev10017876m.g Citrus clementina HOM05D004683 ORTHO05D005388 7.2e-53 212.2 414 44.2
HPP92_028363 Vanilla planifolia HOM05D004683 ORTHO05D005388 1.6e-52 211.1 437 41.2
Ah.09g234040 Amaranthus hybridus HOM05D004683 ORTHO05D005388 1.0e-51 208.4 424 42.2
CAN.G1263.24 Capsicum annuum HOM05D004683 ORTHO05D005388 2.7e-47 193.7 311 44.1
MSTRG.7144 Avicennia marina HOM05D004683 ORTHO05D005388 4.5e-47 193.0 262 49.2
unitig_37.g12183 Utricularia gibba HOM05D004683 ORTHO05D005388 3.8e-46 189.9 214 53.3
SEGI_35929 Sequoiadendron giganteum HOM05D004683 ORTHO05D005388 5.0e-46 189.5 352 40.6
Nitab4.5_0001109g0120 Nicotiana tabacum HOM05D004683 ORTHO05D005388 6.8e-43 179.1 416 38.7
ECA246G4668 Erigeron canadensis HOM05D004683 ORTHO05D005388 7.0e-40 169.1 262 45.0
Zm00001eb057420 Zea mays HOM05D004683 ORTHO05D005388 6.0e-39 166.0 283 43.1
Sopen11g007340 Solanum pennellii HOM05D004683 ORTHO05D005388 1.3e-38 164.9 188 52.7
Zm00001eb214850 Zea mays HOM05D004683 ORTHO05D005388 5.6e-37 159.5 366 36.3
CSS0001859 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 4.0e-35 153.3 208 52.9
CSS0027604 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 4.0e-35 153.3 208 52.9
PSO339G0967 Papaver somniferum HOM05D004683 ORTHO05D005388 4.0e-35 153.3 104 74.0
CDE04G1899 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 2.2e-33 147.5 382 37.7
CSS0022133 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 8.3e-33 145.6 220 49.5
BcaNung00108 Brassica carinata HOM05D004683 ORTHO05D005388 1.1e-32 145.2 252 45.6
MSTRG.16041 Avicennia marina HOM05D004683 ORTHO05D005388 7.0e-32 142.5 189 49.2
CDE07G1645 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 1.1e-29 135.2 340 36.5
MSTRG.14824 Avicennia marina HOM05D004683 ORTHO05D005388 8.9e-27 125.6 117 63.2
Os03g0750900 Oryza sativa ssp. japonica HOM05D004683 ORTHO05D005388 2.2e-25 120.9 216 43.5
CSS0022243 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 6.0e-23 112.8 208 43.3
CSS0009085 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.0e-22 112.1 205 43.4
CSS0042721 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.7e-22 111.3 208 42.8
CSS0004114 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.3e-22 110.9 208 42.8
CSS0017523 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 6.6e-22 109.4 208 42.3
CSS0049827 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.5e-21 108.2 208 42.3
Sopen00g010710 Solanum pennellii HOM05D004683 ORTHO05D005388 1.9e-21 107.8 183 43.7
CSS0011389 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.4e-19 100.9 123 48.0
CSS0019011 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.1e-15 87.8 208 37.5
COL.COLO4_30227 Corchorus olitorius HOM05D001156 ORTHO05D001006 2.7e-15 87.4 100 59.0
A09p40660 Brassica napus HOM05D004683 ORTHO05D005388 9.6e-13 79.0 71 64.8
Os05g0547100 Oryza sativa ssp. japonica HOM05D004683 ORTHO05D005388 1.6e-12 78.2 160 39.4
SMO351G0434 Selaginella moellendorffii HOM05D025386 ORTHO05D005388 6.9e-11 72.8 300 30.0
FAN11G0338 Fragaria x ananassa HOM05D004683 ORTHO05D035386 2.0e-10 71.2 88 52.3
Sabra19G0093600 Salix brachista HOM05D000057 ORTHO05D005388 2.9e-09 67.4 88 51.1
Zm00001eb365900 Zea mays HOM05D004683 ORTHO05D005388 9.3e-08 62.4 114 33.3


User provided reference genes

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