Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy4G02045 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 1.4e-47 192.6 96 100.0
Aqoxy4G02036 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 2.8e-27 125.2 88 72.7
Aqoxy4G02044 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 4.7e-27 124.4 88 70.5
MBI06_g08453_MAGBIO Magnolia biondii HOM05D003712 ORTHO05D004368 2.7e-22 108.6 93 54.8
Haze_06583 Corylus avellana HOM05D003712 ORTHO05D004368 5.2e-18 94.4 96 46.9
FAN21G1388 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.5e-17 92.8 95 45.3
FAN16G2577 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.0e-17 92.4 109 45.0
RcHm_v2.0_Chr5g0006151 Rosa chinensis HOM05D003712 ORTHO05D004368 2.0e-17 92.4 96 49.0
Actinidia24056 Actinidia chinensis HOM05D003712 ORTHO05D004368 2.6e-17 92.0 96 50.0
MBI18_g37562_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 3.4e-17 91.7 92 48.9
Thecc.06G200700 Theobroma cacao HOM05D003712 ORTHO05D004368 3.4e-17 91.7 93 50.5
Manes.12G082800 Manihot esculenta HOM05D003712 ORTHO05D004368 4.4e-17 91.3 93 45.2
Cfa014527 Carpinus fangiana HOM05D003712 ORTHO05D004368 5.8e-17 90.9 96 51.0
Gorai.011G141000 Gossypium raimondii HOM05D003712 ORTHO05D004368 7.6e-17 90.5 100 45.0
Gohir.A06G127300 Gossypium hirsutum HOM05D003712 ORTHO05D004368 9.9e-17 90.1 95 50.5
Gohir.D06G128000 Gossypium hirsutum HOM05D003712 ORTHO05D004368 9.9e-17 90.1 93 50.5
Gorai.010G149700 Gossypium raimondii HOM05D003712 ORTHO05D004368 9.9e-17 90.1 93 50.5
TAR626G0105 Trochodendron aralioides HOM05D003712 ORTHO05D004368 1.3e-16 89.7 95 43.2
TAR626G1156 Trochodendron aralioides HOM05D003712 ORTHO05D004368 1.3e-16 89.7 95 44.2
Gohir.D10G127900 Gossypium hirsutum HOM05D003712 ORTHO05D004368 1.7e-16 89.4 100 44.0
FvH4_3g03882 Fragaria vesca HOM05D003712 ORTHO05D004368 2.2e-16 89.0 100 43.0
FAN11G0545 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.9e-16 88.6 108 41.7
Cpa.g.sc228.6 Carica papaya HOM05D003712 ORTHO05D004368 3.7e-16 88.2 95 45.3
Gohir.D10G127800 Gossypium hirsutum HOM05D003712 ORTHO05D004368 3.7e-16 88.2 97 48.5
Gohir.A10G138900 Gossypium hirsutum HOM05D003712 ORTHO05D004368 4.9e-16 87.8 100 44.0
Gohir.A10G139000 Gossypium hirsutum HOM05D003712 ORTHO05D004368 4.9e-16 87.8 97 48.5
Ciclev10003398m.g Citrus clementina HOM05D003712 ORTHO05D004368 8.3e-16 87.0 91 45.1
Gorai.011G140900 Gossypium raimondii HOM05D003712 ORTHO05D004368 8.3e-16 87.0 97 47.4
DCAR_008077 Daucus carota HOM05D003712 ORTHO05D004368 1.4e-15 86.3 92 45.7
Manes.13G034200 Manihot esculenta HOM05D003712 ORTHO05D004368 1.4e-15 86.3 95 47.4
Prupe.4G037900 Prunus persica HOM05D003712 ORTHO05D004368 1.4e-15 86.3 88 47.7
Aqoxy4G02041 Aquilegia oxysepala HOM05D003712 ORTHO05D077435 2.4e-15 85.5 108 51.9
Solyc07g054700.3 Solanum lycopersicum HOM05D003712 ORTHO05D004368 2.4e-15 85.5 96 42.7
Dinv13825 Davidia involucrata HOM05D003712 ORTHO05D004368 3.2e-15 85.1 52 63.5
Prupe.3G230700 Prunus persica HOM05D003712 ORTHO05D004368 3.2e-15 85.1 96 46.9
Ciclev10003665m.g Citrus clementina HOM05D003712 ORTHO05D004368 4.1e-15 84.7 91 44.0
COL.COLO4_31595 Corchorus olitorius HOM05D003712 ORTHO05D004368 4.1e-15 84.7 97 43.3
DCAR_004145 Daucus carota HOM05D003712 ORTHO05D004368 5.4e-15 84.3 86 45.3
Migut.H01521 Erythranthe guttata HOM05D003712 ORTHO05D004368 5.4e-15 84.3 93 45.2
Potri.007G109600 Populus trichocarpa HOM05D003712 ORTHO05D004368 5.4e-15 84.3 96 47.9
CANSAT56G2493 Cannabis sativa HOM05D003712 ORTHO05D004368 7.1e-15 84.0 104 45.2
CiPaw.10G118000 Carya illinoinensis HOM05D003712 ORTHO05D004368 7.1e-15 84.0 92 44.6
Prupe.3G230900 Prunus persica HOM05D003712 ORTHO05D004368 7.1e-15 84.0 92 46.7
RcHm_v2.0_Chr5g0006161 Rosa chinensis HOM05D003712 ORTHO05D004368 7.1e-15 84.0 110 40.0
MD17G1084800 Malus domestica HOM05D003712 ORTHO05D004368 9.2e-15 83.6 95 47.4
Potri.005G224300 Populus trichocarpa HOM05D003712 ORTHO05D004368 9.2e-15 83.6 93 44.1
Ciclev10017864m.g Citrus clementina HOM05D003712 ORTHO05D004368 1.2e-14 83.2 91 44.0
Prupe.3G230500 Prunus persica HOM05D003712 ORTHO05D004368 1.2e-14 83.2 97 42.3
FvH4_3g03881 Fragaria vesca HOM05D003712 ORTHO05D004368 1.6e-14 82.8 94 42.6
QL01p014092 Quercus lobata HOM05D003712 ORTHO05D004368 1.6e-14 82.8 97 48.5
Nitab4.5_0002956g0060 Nicotiana tabacum HOM05D003712 ORTHO05D004368 2.1e-14 82.4 96 40.6
Potri.005G061780 Populus trichocarpa HOM05D003712 ORTHO05D004368 2.1e-14 82.4 91 44.0
Haze_13069 Corylus avellana HOM05D003712 ORTHO05D004368 2.7e-14 82.0 94 47.9
MBI19_g03250_MAGBIO Magnolia biondii HOM05D000165 ORTHO05D008234 3.5e-14 81.6 65 50.8
Aqoxy5G01666 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 4.6e-14 81.3 91 44.0
Aqoxy5G01667 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 6.0e-14 80.9 84 45.2
COL.COLO4_06989 Corchorus olitorius HOM05D003712 ORTHO05D004368 7.8e-14 80.5 93 43.0
FAN16G1684 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.0e-13 80.1 94 44.7
Ciclev10033348m.g Citrus clementina HOM05D003712 ORTHO05D004368 1.3e-13 79.7 91 40.7
FAN25G2638 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.3e-13 79.7 57 59.6
Hma1.2p1_0565F.1_g179610 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 1.7e-13 79.3 90 42.2
FvH4_6g44501 Fragaria vesca HOM05D003712 ORTHO05D004368 2.3e-13 79.0 87 44.8
FAN14G5484 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.3e-13 79.0 87 44.8
Prupe.3G230400 Prunus persica HOM05D003712 ORTHO05D004368 2.3e-13 79.0 95 45.3
FAN14G2952 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.0e-13 78.6 80 41.2
FAN14G3502 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.0e-13 78.6 80 41.2
Prupe.3G230600 Prunus persica HOM05D003712 ORTHO05D004368 3.9e-13 78.2 93 40.9
DCAR_008079 Daucus carota HOM05D003712 ORTHO05D004368 5.1e-13 77.8 91 44.0
DCAR_008081 Daucus carota HOM05D003712 ORTHO05D004368 5.1e-13 77.8 91 44.0
Hma1.2p1_0565F.1_g179590 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 5.1e-13 77.8 91 42.9
Actinidia09903 Actinidia chinensis HOM05D003712 ORTHO05D004368 8.6e-13 77.0 52 53.8
ATR0693G124 Amborella trichopoda HOM05D003712 ORTHO05D004368 8.6e-13 77.0 92 39.1
MD09G1090300 Malus domestica HOM05D003712 ORTHO05D004368 8.6e-13 77.0 88 45.5
Peaxi162Scf00485g00072 Petunia axillaris HOM05D003712 ORTHO05D004368 8.6e-13 77.0 91 42.9
FvH4_6g24132 Fragaria vesca HOM05D003712 ORTHO05D004368 1.5e-12 76.3 58 50.0
TPR.G32437 Trifolium pratense HOM05D003712 ORTHO05D004368 1.5e-12 76.3 93 41.9
FAN25G1764 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.9e-12 75.9 134 35.1
FAN05G3297 Fragaria x ananassa HOM05D004871 ORTHO05D005755 2.5e-12 75.5 88 43.2
HanXRQChr15g0488611 Helianthus annuus HOM05D003712 ORTHO05D004368 2.5e-12 75.5 91 39.6
HanXRQChr15g0488621 Helianthus annuus HOM05D003712 ORTHO05D004368 2.5e-12 75.5 91 39.6
Oeu006541.1 Olea europaea HOM05D003712 ORTHO05D004368 2.5e-12 75.5 93 43.0
Sed0020030 Sechium edule HOM05D003712 ORTHO05D004368 2.5e-12 75.5 93 36.6
FAN02G1220 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.3e-12 75.1 85 43.5
Oeu006542.1 Olea europaea HOM05D003712 ORTHO05D004368 3.3e-12 75.1 93 39.8
Actinidia11811 Actinidia chinensis HOM05D003712 ORTHO05D004368 4.3e-12 74.7 67 50.7
HanXRQChr05g0131191 Helianthus annuus HOM05D003712 ORTHO05D004368 4.3e-12 74.7 91 40.7
Nitab4.5_0002791g0030 Nicotiana tabacum HOM05D003712 ORTHO05D004368 5.6e-12 74.3 92 40.2
Solyc07g054710.2 Solanum lycopersicum HOM05D003712 ORTHO05D004368 5.6e-12 74.3 98 41.8
DCAR_004146 Daucus carota HOM05D003712 ORTHO05D004368 7.3e-12 73.9 92 41.3
Hma1.2p1_0565F.1_g179580 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 7.3e-12 73.9 91 40.7
Eucgr.E03691 Eucalyptus grandis HOM05D003712 ORTHO05D004368 9.6e-12 73.6 85 41.2
Nitab4.5_0005244g0050 Nicotiana tabacum HOM05D003712 ORTHO05D004368 9.6e-12 73.6 91 40.7
Potri.007G117900 Populus trichocarpa HOM05D003712 ORTHO05D004368 9.6e-12 73.6 87 40.2
DCAR_004148 Daucus carota HOM05D003712 ORTHO05D004368 1.2e-11 73.2 56 48.2
FAN14G3156 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.2e-11 73.2 93 38.7
Lsat_1_v5_gn_4_69400 Lactuca sativa HOM05D003712 ORTHO05D004368 1.2e-11 73.2 89 39.3
Peaxi162Scf00089g01522 Petunia axillaris HOM05D003712 ORTHO05D004368 1.2e-11 73.2 93 40.9
Potri.007G106900 Populus trichocarpa HOM05D003712 ORTHO05D004368 1.2e-11 73.2 87 42.5
RcHm_v2.0_Chr2g0161661 Rosa chinensis HOM05D003712 ORTHO05D004368 1.2e-11 73.2 56 51.8
RcHm_v2.0_Chr2g0161721 Rosa chinensis HOM05D003712 ORTHO05D004368 1.2e-11 73.2 56 51.8
Migut.M00335 Erythranthe guttata HOM05D003712 ORTHO05D004368 1.6e-11 72.8 87 36.8
Oeu032464.1 Olea europaea HOM05D003712 ORTHO05D004368 1.6e-11 72.8 83 34.9
DCAR_024926 Daucus carota HOM05D003712 ORTHO05D004368 2.1e-11 72.4 91 39.6
Oeu032463.1 Olea europaea HOM05D003712 ORTHO05D004368 2.1e-11 72.4 83 37.3
PGSC0003DMG400042227 Solanum tuberosum HOM05D003712 ORTHO05D004368 2.1e-11 72.4 56 51.8
Migut.M00339 Erythranthe guttata HOM05D003712 ORTHO05D004368 2.8e-11 72.0 87 36.8
CiPaw.07G040700 Carya illinoinensis HOM05D003712 ORTHO05D004368 3.6e-11 71.6 93 39.8
FvH4_6g44841 Fragaria vesca HOM05D003712 ORTHO05D004368 3.6e-11 71.6 49 53.1
Nitab4.5_0002956g0080 Nicotiana tabacum HOM05D003712 ORTHO05D004368 6.2e-11 70.9 92 40.2
ClCG00G003860 Citrullus lanatus HOM05D003712 ORTHO05D004368 8.1e-11 70.5 80 45.0
ClCG01G022520 Citrullus lanatus HOM05D003712 ORTHO05D004368 8.1e-11 70.5 80 45.0
Nitab4.5_0001871g0080 Nicotiana tabacum HOM05D003712 ORTHO05D004368 8.1e-11 70.5 92 39.1
SalBow7G0868 Salvia bowleyana HOM05D003712 ORTHO05D004368 8.1e-11 70.5 92 34.8
Potri.002G038350 Populus trichocarpa HOM05D003712 ORTHO05D004368 1.1e-10 70.1 77 41.6
Nitab4.5_0001871g0120 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.4e-10 69.7 52 51.9
Nitab4.5_0014858g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.4e-10 69.7 92 39.1
Sed0026588 Sechium edule HOM05D003712 ORTHO05D004368 1.4e-10 69.7 96 36.5
CsaV3_6G049690 Cucumis sativus L. HOM05D003712 ORTHO05D004368 1.8e-10 69.3 92 40.2
Eucgr.I00207 Eucalyptus grandis HOM05D003712 ORTHO05D004368 1.8e-10 69.3 94 38.3
Medtr4g091000 Medicago truncatula HOM05D003712 ORTHO05D004368 1.8e-10 69.3 91 41.8
Nitab4.5_0008654g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.8e-10 69.3 91 39.6
DCAR_004147 Daucus carota HOM05D003712 ORTHO05D004368 2.4e-10 68.9 102 36.3
Migut.M00336 Erythranthe guttata HOM05D003712 ORTHO05D004368 2.4e-10 68.9 91 36.3
HanXRQChr16g0517551 Helianthus annuus HOM05D003712 ORTHO05D004368 2.4e-10 68.9 94 36.2
Peaxi162Scf00779g00008 Petunia axillaris HOM05D003712 ORTHO05D004368 2.4e-10 68.9 99 41.4
FAN18G4187 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.1e-10 68.6 91 39.6
Glyma.07G190500 Glycine max HOM05D003712 ORTHO05D004368 3.1e-10 68.6 95 40.0
Lj4g0026887 Lotus japonicus HOM05D003712 ORTHO05D004368 3.1e-10 68.6 95 38.9
Nitab4.5_0005389g0030 Nicotiana tabacum HOM05D003712 ORTHO05D004368 3.1e-10 68.6 96 40.6
arahy.Tifrunner.gnm1.ann1.UHMW3K Arachis hypogaea HOM05D003712 ORTHO05D004368 4.0e-10 68.2 94 38.3
FvH4_5g34303 Fragaria vesca HOM05D003712 ORTHO05D004368 4.0e-10 68.2 91 39.6
Glyma.08G058700 Glycine max HOM05D003712 ORTHO05D004368 4.0e-10 68.2 86 38.4
Nitab4.5_0008774g0010 Nicotiana tabacum HOM05D003712 ORTHO05D004368 5.2e-10 67.8 92 37.0
Peaxi162Scf00779g00018 Petunia axillaris HOM05D003712 ORTHO05D004368 5.2e-10 67.8 92 38.0
Prupe.1G064500 Prunus persica HOM05D003712 ORTHO05D004368 5.2e-10 67.8 60 45.0
CsaV3_6G049680 Cucumis sativus L. HOM05D003712 ORTHO05D004368 6.8e-10 67.4 93 41.9
ECA236G2370 Erigeron canadensis HOM05D003712 ORTHO05D004368 6.8e-10 67.4 54 51.9
FvH4_3g39491 Fragaria vesca HOM05D003712 ORTHO05D004368 8.9e-10 67.0 94 37.2
Medtr4g091010 Medicago truncatula HOM05D003712 ORTHO05D004368 1.2e-09 66.6 77 40.3
FAN16G2504 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.5e-09 66.2 52 53.8
Medtr4g091020 Medicago truncatula HOM05D003712 ORTHO05D004368 1.5e-09 66.2 95 36.8
RcHm_v2.0_Chr7g0234891 Rosa chinensis HOM05D003712 ORTHO05D004368 1.5e-09 66.2 51 49.0
TPR.G22155 Trifolium pratense HOM05D003712 ORTHO05D004368 1.5e-09 66.2 95 37.9
FAN08G3545 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.0e-09 65.9 92 37.0
Phvul.002G222400 Phaseolus vulgaris HOM05D003712 ORTHO05D004368 2.0e-09 65.9 50 52.0
SalBow8G4951 Salvia bowleyana HOM05D003712 ORTHO05D004368 2.0e-09 65.9 93 37.6
PGSC0003DMG401022401 Solanum tuberosum HOM05D003712 ORTHO05D004368 2.0e-09 65.9 91 36.3
FAN21G1030 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.6e-09 65.5 94 37.2
Lsat_1_v5_gn_4_56541 Lactuca sativa HOM05D003712 ORTHO05D004368 2.6e-09 65.5 92 35.9
FAN25G3769 Fragaria x ananassa HOM05D003712 ORTHO05D004368 4.4e-09 64.7 94 36.2
FvH4_5g02870 Fragaria vesca HOM05D003712 ORTHO05D004368 5.8e-09 64.3 93 41.9
MBI18_g37563_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 5.8e-09 64.3 49 53.1
ClCG00G003850 Citrullus lanatus HOM05D003712 ORTHO05D004368 7.6e-09 63.9 47 55.3
ClCG01G022510 Citrullus lanatus HOM05D003712 ORTHO05D004368 7.6e-09 63.9 47 55.3
Nitab4.5_0000649g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 7.6e-09 63.9 99 35.4
TPR.G32428 Trifolium pratense HOM05D003712 ORTHO05D004368 7.6e-09 63.9 92 38.0
FAN09G2580 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.3e-08 63.2 51 43.1
Lsat_1_v5_gn_4_56561 Lactuca sativa HOM05D003712 ORTHO05D004368 1.3e-08 63.2 83 37.3
Lsat_1_v5_gn_4_56721 Lactuca sativa HOM05D003712 ORTHO05D004368 1.3e-08 63.2 83 37.3
FvH4_6g44490 Fragaria vesca HOM05D003712 ORTHO05D004368 2.2e-08 62.4 43 51.2
FAN14G4046 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.9e-08 62.0 86 36.0
Lsat_1_v5_gn_4_56681 Lactuca sativa HOM05D003712 ORTHO05D004368 2.9e-08 62.0 83 37.3
Zm00001eb369810 Zea mays HOM05D003712 ORTHO05D004368 3.8e-08 61.6 70 41.4
Lsat_1_v5_gn_4_56621 Lactuca sativa HOM05D003712 ORTHO05D004368 4.9e-08 61.2 83 36.1
Lsat_1_v5_gn_4_56741 Lactuca sativa HOM05D003712 ORTHO05D004368 4.9e-08 61.2 83 36.1
DCAR_028776 Daucus carota HOM05D003712 ORTHO05D004368 6.4e-08 60.8 88 34.1
ECA234G4130 Erigeron canadensis HOM05D003712 ORTHO05D004368 6.4e-08 60.8 75 38.7
FvH4_6g44545 Fragaria vesca HOM05D003712 ORTHO05D004368 6.4e-08 60.8 91 36.3
FAN02G2973 Fragaria x ananassa HOM05D003712 ORTHO05D004368 6.4e-08 60.8 87 34.5
FvH4_3g39481 Fragaria vesca HOM05D003712 ORTHO05D004368 8.4e-08 60.5 88 38.6
FAN11G3078 Fragaria x ananassa HOM05D003712 ORTHO05D004368 8.4e-08 60.5 92 38.0
TWI18G1344 Tripterygium wilfordii HOM05D003712 ORTHO05D004368 8.4e-08 60.5 91 34.1
RcHm_v2.0_Chr5g0071201 Rosa chinensis HOM05D003712 ORTHO05D004368 1.1e-07 60.1 83 36.1
FAN18G2182 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.4e-07 59.7 93 39.8
Os01g0783000 Oryza sativa ssp. japonica HOM05D003712 ORTHO05D004368 1.4e-07 59.7 52 48.1
SalBow7G4100 Salvia bowleyana HOM05D003712 ORTHO05D004368 1.9e-07 59.3 92 34.8
Nitab4.5_0004216g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 2.4e-07 58.9 91 37.4
RcHm_v2.0_Chr2g0161751 Rosa chinensis HOM05D003712 ORTHO05D004368 2.4e-07 58.9 91 33.0
DCAR_012976 Daucus carota HOM05D003712 ORTHO05D004368 3.2e-07 58.5 52 40.4
HanXRQChr16g0517561 Helianthus annuus HOM05D003712 ORTHO05D004368 4.2e-07 58.2 85 34.1
Os01g0782901 Oryza sativa ssp. japonica HOM05D003712 ORTHO05D004368 1.2e-06 56.6 105 33.3
Lj4g0012776 Lotus japonicus HOM05D003712 ORTHO05D004368 1.6e-06 56.2 92 38.0


User provided reference genes

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